Wall clock time and date at job start Sat Apr 11 2020 06:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50698 * 120.00075 * 2 1 4 4 C 1.32993 * 120.00089 * 180.02562 * 2 1 3 5 5 C 1.47104 * 119.99952 * 3.80676 * 4 2 1 6 6 O 1.21613 * 120.00210 * 354.24187 * 5 4 2 7 7 N 1.34782 * 120.00065 * 174.23653 * 5 4 2 8 8 C 1.46497 * 119.99870 * 0.02562 * 7 5 4 9 9 C 1.46498 * 119.99817 * 180.02562 * 7 5 4 10 10 C 1.53002 * 109.46851 * 93.81709 * 9 7 5 11 11 H 1.09004 * 109.87417 * 306.62310 * 10 9 7 12 12 C 1.54320 * 110.01321 * 67.71647 * 10 9 7 13 13 C 1.55158 * 102.94248 * 141.68293 * 12 10 9 14 14 C 1.55131 * 101.48612 * 324.33089 * 13 12 10 15 15 N 1.47026 * 109.88215 * 185.60523 * 10 9 7 16 16 C 1.34775 * 125.64848 * 61.45145 * 15 10 9 17 17 O 1.21278 * 119.99866 * 354.61084 * 16 15 10 18 18 C 1.50697 * 120.00116 * 174.61199 * 16 15 10 19 19 S 1.80999 * 109.47127 * 179.97438 * 18 16 15 20 20 C 1.76205 * 99.99789 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00118 * 359.97438 * 20 19 18 22 22 C 1.38794 * 119.99755 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00288 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99978 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47034 * 89.99776 * 24 22 20 26 26 H 1.48503 * 109.46989 * 209.99913 * 24 22 20 27 27 H 1.48499 * 109.46646 * 329.99588 * 24 22 20 28 28 H 1.08997 * 109.47300 * 242.79524 * 1 2 3 29 29 H 1.09002 * 109.47362 * 2.79429 * 1 2 3 30 30 H 1.09003 * 109.47446 * 122.79681 * 1 2 3 31 31 H 1.08997 * 109.47467 * 240.00063 * 3 2 1 32 32 H 1.09003 * 109.47065 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47057 * 120.00042 * 3 2 1 34 34 H 1.07997 * 120.00115 * 183.81428 * 4 2 1 35 35 H 1.08994 * 109.47202 * 269.99937 * 8 7 5 36 36 H 1.09001 * 109.47442 * 29.99813 * 8 7 5 37 37 H 1.09006 * 109.47140 * 149.99596 * 8 7 5 38 38 H 1.09001 * 109.47403 * 333.81530 * 9 7 5 39 39 H 1.09002 * 109.47155 * 213.80916 * 9 7 5 40 40 H 1.08996 * 110.72388 * 260.04614 * 12 10 9 41 41 H 1.09003 * 110.72254 * 23.14448 * 12 10 9 42 42 H 1.08991 * 111.00440 * 82.57435 * 13 12 10 43 43 H 1.09008 * 111.00742 * 206.38782 * 13 12 10 44 44 H 1.08994 * 110.49959 * 278.45765 * 14 13 12 45 45 H 1.09005 * 110.34279 * 156.05376 * 14 13 12 46 46 H 1.08998 * 109.47348 * 59.99494 * 18 16 15 47 47 H 1.09005 * 109.46764 * 300.00021 * 18 16 15 48 48 H 0.97003 * 120.00093 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1517 -0.0005 5 6 1.4389 -2.4243 -0.0857 6 8 0.2233 -2.4293 -0.0500 7 7 2.1144 -3.5846 -0.2033 8 6 3.5787 -3.5786 -0.2459 9 6 1.3843 -4.8518 -0.2887 10 6 1.1712 -5.2196 -1.7585 11 1 0.6998 -4.3888 -2.2838 12 6 2.5238 -5.5586 -2.4196 13 6 2.1659 -6.7432 -3.3555 14 6 1.0954 -7.4881 -2.5155 15 7 0.3249 -6.4178 -1.8565 16 6 -0.9432 -6.5223 -1.4122 17 8 -1.4455 -5.6094 -0.7917 18 6 -1.7370 -7.7736 -1.6865 19 16 -3.3897 -7.6095 -0.9668 20 6 -4.0786 -9.1653 -1.4248 21 1 -3.4872 -9.8736 -1.9860 22 6 -5.3817 -9.4800 -1.0652 23 7 -6.1030 -8.6162 -0.3825 24 14 -6.1119 -11.1297 -1.5500 25 1 -5.8403 -12.1245 -0.4816 26 1 -7.5787 -10.9872 -1.7326 27 1 -5.4971 -11.5885 -2.8215 28 1 -0.3634 -0.4698 0.9139 29 1 -0.3634 1.0264 -0.0501 30 1 -0.3634 -0.5566 -0.8639 31 1 2.8871 1.3629 -0.8899 32 1 1.5521 2.1336 0.0005 33 1 2.8871 1.3628 0.8900 34 1 3.2501 -1.1528 0.0617 35 1 3.9118 -3.4908 -1.2800 36 1 3.9555 -2.7334 0.3301 37 1 3.9585 -4.5071 0.1807 38 1 0.4174 -4.7480 0.2037 39 1 1.9598 -5.6365 0.2023 40 1 2.8950 -4.7107 -2.9953 41 1 3.2540 -5.8630 -1.6697 42 1 1.7492 -6.3852 -4.2969 43 1 3.0342 -7.3783 -3.5315 44 1 1.5708 -8.1267 -1.7711 45 1 0.4474 -8.0776 -3.1643 46 1 -1.2306 -8.6300 -1.2414 47 1 -1.8222 -7.9211 -2.7632 48 1 -7.0136 -8.8363 -0.1308 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279777491.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:23 Heat of formation + Delta-G solvation = -48.111437 kcal Electronic energy + Delta-G solvation = -27617.027377 eV Core-core repulsion = 23798.898626 eV Total energy + Delta-G solvation = -3818.128751 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.43783 -39.47600 -37.25828 -36.02910 -35.15497 -32.39077 -31.78293 -30.97472 -28.76705 -28.11379 -27.80203 -27.27721 -25.45485 -25.06410 -22.84942 -21.40000 -20.37578 -18.96623 -18.19474 -17.63519 -17.24337 -16.85803 -16.30101 -15.57379 -15.33555 -14.79506 -14.76374 -14.49708 -14.27021 -14.17827 -14.01546 -13.70143 -13.55970 -13.32805 -13.12011 -12.86708 -12.74112 -12.62464 -12.51263 -12.39754 -12.28911 -12.09093 -11.77813 -11.68912 -11.56522 -11.35268 -11.03610 -11.00638 -10.97563 -10.79740 -10.72202 -9.77323 -9.54231 -9.32046 -9.22479 -9.02931 -8.90212 -8.28704 -8.16706 -6.44936 -6.17331 -3.87614 1.24713 2.73636 3.10560 3.17934 3.24787 3.27226 3.30463 3.34503 3.70106 4.23816 4.35779 4.41833 4.43530 4.61514 4.69631 4.75747 4.96032 5.02081 5.10209 5.15738 5.17410 5.18346 5.19546 5.20786 5.25597 5.37609 5.45889 5.50783 5.54516 5.59026 5.63536 5.68984 5.69569 5.81454 5.84421 5.92463 5.97954 6.03006 6.12647 6.19127 6.29999 6.39484 6.41915 6.64685 7.36417 7.63149 7.75839 8.25617 8.39113 8.66429 9.27532 10.90037 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014854 B = 0.002588 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.571799 B =10818.550699 C =12373.431732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.032 4.032 3 C -0.127 4.127 4 C -0.241 4.241 5 C 0.538 3.462 6 O -0.517 6.517 7 N -0.614 5.614 8 C 0.079 3.921 9 C 0.104 3.896 10 C 0.129 3.871 11 H 0.074 0.926 12 C -0.125 4.125 13 C -0.133 4.133 14 C 0.101 3.899 15 N -0.623 5.623 16 C 0.544 3.456 17 O -0.500 6.500 18 C -0.146 4.146 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.262 12.486 -3.165 29.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.033 4.033 3 C -0.183 4.183 4 C -0.262 4.262 5 C 0.329 3.671 6 O -0.394 6.394 7 N -0.349 5.349 8 C -0.064 4.064 9 C -0.020 4.020 10 C 0.024 3.976 11 H 0.092 0.908 12 C -0.163 4.163 13 C -0.171 4.171 14 C -0.023 4.023 15 N -0.362 5.362 16 C 0.332 3.668 17 O -0.373 6.373 18 C -0.296 4.296 19 S 0.168 5.832 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.143 0.857 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.126 0.874 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 24.574 13.869 -2.094 28.295 hybrid contribution 0.424 -2.303 -1.099 2.587 sum 24.999 11.565 -3.193 27.729 Atomic orbital electron populations 1.21123 0.90548 1.01168 1.04781 1.22630 0.97099 0.94401 0.89205 1.21024 1.00311 0.94300 1.02670 1.22401 0.99980 0.92022 1.11776 1.18637 0.87429 0.84093 0.76969 1.90902 1.13380 1.86597 1.48539 1.47622 1.06608 1.06506 1.74118 1.21859 0.80001 1.02928 1.01638 1.21913 0.99523 0.84110 0.96457 1.21835 0.90545 0.88947 0.96322 0.90779 1.22749 0.96046 0.98739 0.98786 1.22815 0.98698 0.97145 0.98424 1.22335 0.93594 0.90571 0.95769 1.48556 1.12606 1.13351 1.61637 1.20083 0.79421 0.89101 0.78204 1.90766 1.68344 1.40289 1.37870 1.23509 1.03728 0.97282 1.05110 1.85466 1.01558 1.24362 1.71861 1.22861 1.01307 1.02503 1.41613 0.90989 1.24993 0.95933 0.97948 0.94748 1.70025 1.09645 1.34672 1.35902 0.86175 0.78200 0.82281 0.78876 1.20290 1.20764 1.19722 0.89819 0.92966 0.89514 0.90654 0.91129 0.90711 0.85670 0.92693 0.91026 0.91236 0.87421 0.90938 0.90445 0.90628 0.90550 0.89945 0.91425 0.90248 0.89452 0.89405 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 8.35 36.00 0.30 -1.10 16 2 C -0.03 -0.30 6.11 -101.17 -0.62 -0.92 16 3 C -0.13 -0.76 10.07 36.00 0.36 -0.40 16 4 C -0.24 -2.41 8.89 -37.81 -0.34 -2.75 16 5 C 0.54 7.40 7.59 -12.66 -0.10 7.30 16 6 O -0.52 -9.53 12.62 5.27 0.07 -9.46 16 7 N -0.61 -7.06 2.83 -182.98 -0.52 -7.58 16 8 C 0.08 0.52 8.89 59.85 0.53 1.05 16 9 C 0.10 1.43 5.00 -4.04 -0.02 1.41 16 10 C 0.13 1.71 3.14 -66.95 -0.21 1.50 16 11 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 12 C -0.13 -1.07 5.19 -24.90 -0.13 -1.19 16 13 C -0.13 -1.08 7.10 -24.46 -0.17 -1.25 16 14 C 0.10 1.10 6.75 -2.41 -0.02 1.08 16 15 N -0.62 -9.50 3.06 -162.87 -0.50 -10.00 16 16 C 0.54 11.07 7.68 -10.99 -0.08 10.98 16 17 O -0.50 -12.31 14.62 5.56 0.08 -12.23 16 18 C -0.15 -3.11 5.08 36.00 0.18 -2.93 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.53 -15.56 9.50 30.94 0.29 -15.27 16 21 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.74 13.22 55.49 0.73 -26.00 16 24 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.08 1.13 7.47 -51.93 -0.39 0.74 16 29 H 0.05 0.48 7.70 -51.93 -0.40 0.08 16 30 H 0.09 1.22 6.96 -51.93 -0.36 0.86 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.38 7.70 -51.93 -0.40 -0.02 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.13 0.86 6.17 -52.49 -0.32 0.54 16 35 H 0.05 0.29 7.56 -51.93 -0.39 -0.10 16 36 H 0.07 0.37 6.03 -51.93 -0.31 0.06 16 37 H 0.07 0.37 7.93 -51.93 -0.41 -0.04 16 38 H 0.11 2.03 5.68 -51.93 -0.30 1.74 16 39 H 0.07 0.86 7.82 -51.93 -0.41 0.45 16 40 H 0.08 0.58 7.98 -51.93 -0.41 0.17 16 41 H 0.08 0.53 7.22 -51.93 -0.38 0.15 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.87 7.48 -51.93 -0.39 0.48 16 46 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 47 H 0.09 1.75 7.97 -51.91 -0.41 1.34 16 48 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 397.43 15.07 5.99 5.99 Total: -1.00 -37.80 397.43 -9.28 -47.08 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -7.79 Total: -0.23 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -0.11 Total: -0.45 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: -0.28 Total: -43.58 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: 0.15 Total: -21.69 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.80 -9.28 -47.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279777491.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.031 kcal (2) G-P(sol) polarization free energy of solvation -37.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds