Wall clock time and date at job start Sat Apr 11 2020 06:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50698 * 120.00075 * 2 1 4 4 C 1.32993 * 120.00089 * 180.02562 * 2 1 3 5 5 C 1.47104 * 119.99952 * 3.80676 * 4 2 1 6 6 O 1.21613 * 120.00210 * 354.24187 * 5 4 2 7 7 N 1.34782 * 120.00065 * 174.23653 * 5 4 2 8 8 C 1.46497 * 119.99870 * 0.02562 * 7 5 4 9 9 C 1.46498 * 119.99817 * 180.02562 * 7 5 4 10 10 C 1.53002 * 109.46851 * 93.81709 * 9 7 5 11 11 H 1.09004 * 109.87417 * 306.62310 * 10 9 7 12 12 C 1.54320 * 110.01321 * 67.71647 * 10 9 7 13 13 C 1.55158 * 102.94248 * 141.68293 * 12 10 9 14 14 C 1.55131 * 101.48612 * 324.33089 * 13 12 10 15 15 N 1.47026 * 109.88215 * 185.60523 * 10 9 7 16 16 C 1.34775 * 125.64848 * 61.45145 * 15 10 9 17 17 O 1.21278 * 119.99866 * 354.61084 * 16 15 10 18 18 C 1.50697 * 120.00116 * 174.61199 * 16 15 10 19 19 S 1.80999 * 109.47127 * 179.97438 * 18 16 15 20 20 C 1.76205 * 99.99789 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00118 * 359.97438 * 20 19 18 22 22 C 1.38794 * 119.99755 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00288 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99978 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47034 * 89.99776 * 24 22 20 26 26 H 1.48503 * 109.46989 * 209.99913 * 24 22 20 27 27 H 1.48499 * 109.46646 * 329.99588 * 24 22 20 28 28 H 1.08997 * 109.47300 * 242.79524 * 1 2 3 29 29 H 1.09002 * 109.47362 * 2.79429 * 1 2 3 30 30 H 1.09003 * 109.47446 * 122.79681 * 1 2 3 31 31 H 1.08997 * 109.47467 * 240.00063 * 3 2 1 32 32 H 1.09003 * 109.47065 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47057 * 120.00042 * 3 2 1 34 34 H 1.07997 * 120.00115 * 183.81428 * 4 2 1 35 35 H 1.08994 * 109.47202 * 269.99937 * 8 7 5 36 36 H 1.09001 * 109.47442 * 29.99813 * 8 7 5 37 37 H 1.09006 * 109.47140 * 149.99596 * 8 7 5 38 38 H 1.09001 * 109.47403 * 333.81530 * 9 7 5 39 39 H 1.09002 * 109.47155 * 213.80916 * 9 7 5 40 40 H 1.08996 * 110.72388 * 260.04614 * 12 10 9 41 41 H 1.09003 * 110.72254 * 23.14448 * 12 10 9 42 42 H 1.08991 * 111.00440 * 82.57435 * 13 12 10 43 43 H 1.09008 * 111.00742 * 206.38782 * 13 12 10 44 44 H 1.08994 * 110.49959 * 278.45765 * 14 13 12 45 45 H 1.09005 * 110.34279 * 156.05376 * 14 13 12 46 46 H 1.08998 * 109.47348 * 59.99494 * 18 16 15 47 47 H 1.09005 * 109.46764 * 300.00021 * 18 16 15 48 48 H 0.97003 * 120.00093 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1517 -0.0005 5 6 1.4389 -2.4243 -0.0857 6 8 0.2233 -2.4293 -0.0500 7 7 2.1144 -3.5846 -0.2033 8 6 3.5787 -3.5786 -0.2459 9 6 1.3843 -4.8518 -0.2887 10 6 1.1712 -5.2196 -1.7585 11 1 0.6998 -4.3888 -2.2838 12 6 2.5238 -5.5586 -2.4196 13 6 2.1659 -6.7432 -3.3555 14 6 1.0954 -7.4881 -2.5155 15 7 0.3249 -6.4178 -1.8565 16 6 -0.9432 -6.5223 -1.4122 17 8 -1.4455 -5.6094 -0.7917 18 6 -1.7370 -7.7736 -1.6865 19 16 -3.3897 -7.6095 -0.9668 20 6 -4.0786 -9.1653 -1.4248 21 1 -3.4872 -9.8736 -1.9860 22 6 -5.3817 -9.4800 -1.0652 23 7 -6.1030 -8.6162 -0.3825 24 14 -6.1119 -11.1297 -1.5500 25 1 -5.8403 -12.1245 -0.4816 26 1 -7.5787 -10.9872 -1.7326 27 1 -5.4971 -11.5885 -2.8215 28 1 -0.3634 -0.4698 0.9139 29 1 -0.3634 1.0264 -0.0501 30 1 -0.3634 -0.5566 -0.8639 31 1 2.8871 1.3629 -0.8899 32 1 1.5521 2.1336 0.0005 33 1 2.8871 1.3628 0.8900 34 1 3.2501 -1.1528 0.0617 35 1 3.9118 -3.4908 -1.2800 36 1 3.9555 -2.7334 0.3301 37 1 3.9585 -4.5071 0.1807 38 1 0.4174 -4.7480 0.2037 39 1 1.9598 -5.6365 0.2023 40 1 2.8950 -4.7107 -2.9953 41 1 3.2540 -5.8630 -1.6697 42 1 1.7492 -6.3852 -4.2969 43 1 3.0342 -7.3783 -3.5315 44 1 1.5708 -8.1267 -1.7711 45 1 0.4474 -8.0776 -3.1643 46 1 -1.2306 -8.6300 -1.2414 47 1 -1.8222 -7.9211 -2.7632 48 1 -7.0136 -8.8363 -0.1308 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279777491.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:22 Heat of formation + Delta-G solvation = -74.099695 kcal Electronic energy + Delta-G solvation = -27618.154313 eV Core-core repulsion = 23798.898626 eV Total energy + Delta-G solvation = -3819.255686 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.56030 -40.67210 -38.60452 -36.90947 -36.11016 -34.61619 -33.07262 -31.91330 -30.24493 -28.88717 -28.66155 -27.99192 -27.69562 -25.98450 -24.01371 -22.22735 -21.33912 -20.42610 -19.53427 -19.05865 -18.25145 -18.14029 -17.48183 -16.91266 -16.64978 -16.50206 -16.17908 -15.96100 -15.43919 -15.20691 -14.86524 -14.81235 -14.67585 -14.35890 -14.13366 -14.09910 -13.79535 -13.59022 -13.43729 -13.34981 -13.29439 -13.24534 -13.17293 -12.91477 -12.83499 -12.63565 -12.49452 -12.30778 -12.10640 -11.88914 -11.74900 -11.63009 -11.16735 -10.91014 -10.57099 -10.30412 -10.19459 -9.93570 -9.40676 -8.72306 -8.36763 -6.16804 0.40647 1.20113 1.41100 1.41642 1.53319 1.54153 1.87144 2.24554 2.30566 2.31156 2.96999 3.22055 3.48086 3.61758 3.65982 3.87019 3.89144 3.92308 4.04663 4.15873 4.19381 4.24924 4.36759 4.39412 4.41307 4.55601 4.59686 4.66205 4.69384 4.77993 4.80987 4.85425 4.88916 4.89386 4.98272 4.99244 5.07555 5.11791 5.16825 5.30322 5.38285 5.38507 5.48487 5.54595 5.67632 6.17121 6.38824 6.47468 7.03418 7.12254 7.27369 8.72817 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014854 B = 0.002588 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.571799 B =10818.550699 C =12373.431732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.032 4.032 3 C -0.120 4.120 4 C -0.242 4.242 5 C 0.520 3.480 6 O -0.584 6.584 7 N -0.609 5.609 8 C 0.069 3.931 9 C 0.109 3.891 10 C 0.127 3.873 11 H 0.034 0.966 12 C -0.110 4.110 13 C -0.120 4.120 14 C 0.086 3.914 15 N -0.615 5.615 16 C 0.539 3.461 17 O -0.558 6.558 18 C -0.115 4.115 19 S -0.158 6.158 20 C -0.544 4.544 21 H 0.084 0.916 22 C 0.010 3.990 23 N -0.913 5.913 24 Si 1.003 2.997 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.256 1.256 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.168 0.832 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.072 0.928 43 H 0.122 0.878 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.104 0.896 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.132 11.245 -4.821 33.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.034 4.034 3 C -0.176 4.176 4 C -0.262 4.262 5 C 0.313 3.687 6 O -0.466 6.466 7 N -0.342 5.342 8 C -0.072 4.072 9 C -0.015 4.015 10 C 0.022 3.978 11 H 0.053 0.947 12 C -0.148 4.148 13 C -0.158 4.158 14 C -0.035 4.035 15 N -0.351 5.351 16 C 0.326 3.674 17 O -0.436 6.436 18 C -0.266 4.266 19 S 0.069 5.931 20 C -0.692 4.692 21 H 0.102 0.898 22 C -0.194 4.194 23 N -0.550 5.550 24 Si 0.824 3.176 25 H -0.191 1.191 26 H -0.203 1.203 27 H -0.180 1.180 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.185 0.815 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.091 0.909 43 H 0.140 0.860 44 H 0.108 0.892 45 H 0.099 0.901 46 H 0.127 0.873 47 H 0.122 0.878 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 29.566 12.604 -3.786 32.363 hybrid contribution -0.990 -1.863 -0.594 2.192 sum 28.576 10.741 -4.380 30.840 Atomic orbital electron populations 1.21009 0.93098 1.01496 1.01926 1.22915 0.95697 0.96488 0.88253 1.21069 1.00385 0.91745 1.04368 1.22554 1.01580 0.89878 1.12196 1.19497 0.87042 0.86009 0.76138 1.90890 1.16428 1.87611 1.51669 1.47733 1.08756 1.04907 1.72799 1.22248 0.76223 1.04960 1.03740 1.21652 0.97451 0.85983 0.96446 1.21983 0.92647 0.87062 0.96112 0.94734 1.22764 0.92949 0.99740 0.99299 1.22836 0.98808 0.96847 0.97306 1.22796 0.94116 0.89958 0.96673 1.48532 1.11200 1.15490 1.59840 1.19932 0.81125 0.88032 0.78266 1.90760 1.70171 1.41909 1.40724 1.23280 0.99297 0.98718 1.05316 1.85742 1.07626 1.26071 1.73677 1.23181 1.01966 1.02180 1.41835 0.89759 1.26215 0.96284 1.02603 0.94307 1.70209 1.10143 1.37345 1.37289 0.84893 0.77157 0.76314 0.79214 1.19081 1.20277 1.17989 0.92747 0.90657 0.92924 0.88724 0.90589 0.88799 0.81478 0.90387 0.89082 0.89276 0.93666 0.88552 0.88640 0.87747 0.90933 0.86010 0.89172 0.90142 0.87321 0.87761 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.07 8.35 71.23 0.59 -2.48 16 2 C -0.03 -0.60 6.11 -17.62 -0.11 -0.70 16 3 C -0.12 -1.10 10.07 71.24 0.72 -0.39 16 4 C -0.24 -4.61 8.89 23.43 0.21 -4.40 16 5 C 0.52 15.16 7.59 86.57 0.66 15.81 16 6 O -0.58 -24.38 12.62 -4.07 -0.05 -24.44 16 7 N -0.61 -13.86 2.83 -851.06 -2.41 -16.27 16 8 C 0.07 0.65 8.89 127.77 1.14 1.79 16 9 C 0.11 3.13 5.00 86.38 0.43 3.56 16 10 C 0.13 3.39 3.14 45.34 0.14 3.53 16 11 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 12 C -0.11 -1.45 5.19 31.78 0.17 -1.29 16 13 C -0.12 -1.43 7.10 32.06 0.23 -1.20 16 14 C 0.09 1.65 6.75 86.93 0.59 2.23 16 15 N -0.61 -18.88 3.06 -787.60 -2.41 -21.30 16 16 C 0.54 23.19 7.68 87.66 0.67 23.87 16 17 O -0.56 -30.28 14.62 -3.02 -0.04 -30.32 16 18 C -0.11 -5.05 5.08 71.24 0.36 -4.68 16 19 S -0.16 -9.44 20.57 -56.49 -1.16 -10.60 16 20 C -0.54 -32.34 9.50 67.95 0.65 -31.69 16 21 H 0.08 4.62 7.80 -2.91 -0.02 4.60 16 22 C 0.01 0.61 5.49 84.86 0.47 1.08 16 23 N -0.91 -58.39 13.22 21.65 0.29 -58.10 16 24 Si 1.00 44.86 29.55 68.60 2.03 46.89 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 27 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 28 H 0.05 1.70 7.47 -2.39 -0.02 1.68 16 29 H 0.07 1.49 7.70 -2.39 -0.02 1.47 16 30 H 0.05 1.71 6.96 -2.39 -0.02 1.69 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.64 7.70 -2.39 -0.02 0.63 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.17 1.67 6.17 -2.91 -0.02 1.65 16 35 H 0.08 0.44 7.56 -2.39 -0.02 0.42 16 36 H 0.09 0.54 6.03 -2.39 -0.01 0.53 16 37 H 0.09 0.54 7.93 -2.38 -0.02 0.52 16 38 H 0.04 1.90 5.68 -2.39 -0.01 1.89 16 39 H 0.10 2.20 7.82 -2.39 -0.02 2.18 16 40 H 0.10 1.01 7.98 -2.39 -0.02 0.99 16 41 H 0.10 0.86 7.22 -2.39 -0.02 0.84 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.08 1.55 7.48 -2.38 -0.02 1.54 16 46 H 0.11 4.26 8.14 -2.40 -0.02 4.24 16 47 H 0.10 4.19 7.97 -2.39 -0.02 4.17 16 48 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -95.63 397.43 4.09 -91.54 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.95 Total: 17.56 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 6.91 Total: 5.03 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -4.53 Total: -95.66 kcal Atomic # 8 Polarization: -54.66 SS G_CDS: -0.10 Total: -54.75 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: -9.44 SS G_CDS: -1.16 Total: -10.60 kcal Total: -95.63 4.09 -91.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279777491.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.443 kcal (2) G-P(sol) polarization free energy of solvation -95.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds