Wall clock time and date at job start Sat Apr 11 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50702 * 119.99723 * 2 1 4 4 C 1.32995 * 120.00191 * 179.97438 * 2 1 3 5 5 C 1.47106 * 120.00079 * 3.81164 * 4 2 1 6 6 O 1.21617 * 119.99350 * 4.99519 * 5 4 2 7 7 N 1.34770 * 120.00179 * 184.99682 * 5 4 2 8 8 C 1.46503 * 120.00070 * 359.97438 * 7 5 4 9 9 C 1.46497 * 120.00041 * 180.02562 * 7 5 4 10 10 C 1.53005 * 109.47138 * 95.21569 * 9 7 5 11 11 H 1.08997 * 109.99892 * 52.49786 * 10 9 7 12 12 C 1.54336 * 109.99247 * 291.45861 * 10 9 7 13 13 C 1.55158 * 103.02304 * 218.66699 * 12 10 9 14 14 C 1.54913 * 101.58112 * 35.30592 * 13 12 10 15 15 N 1.47023 * 109.87860 * 173.59470 * 10 9 7 16 16 C 1.34780 * 125.65045 * 298.39075 * 15 10 9 17 17 O 1.21281 * 119.99601 * 354.30990 * 16 15 10 18 18 C 1.50692 * 120.00021 * 174.31286 * 16 15 10 19 19 S 1.81007 * 109.46975 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99703 * 179.97438 * 19 18 16 21 21 H 1.07992 * 120.00653 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99601 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00242 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99892 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47376 * 89.99855 * 24 22 20 26 26 H 1.48501 * 109.46719 * 209.99753 * 24 22 20 27 27 H 1.48498 * 109.47021 * 329.99509 * 24 22 20 28 28 H 1.09001 * 109.47283 * 239.95598 * 1 2 3 29 29 H 1.08995 * 109.47469 * 359.95921 * 1 2 3 30 30 H 1.09007 * 109.46793 * 119.95947 * 1 2 3 31 31 H 1.09005 * 109.46799 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46442 * 299.98962 * 3 2 1 33 33 H 1.08994 * 109.47601 * 59.99544 * 3 2 1 34 34 H 1.07999 * 120.00438 * 183.81138 * 4 2 1 35 35 H 1.08995 * 109.47122 * 267.86862 * 8 7 5 36 36 H 1.09002 * 109.46782 * 27.86955 * 8 7 5 37 37 H 1.09002 * 109.46848 * 147.86517 * 8 7 5 38 38 H 1.09007 * 109.47297 * 335.21715 * 9 7 5 39 39 H 1.08993 * 109.47286 * 215.21911 * 9 7 5 40 40 H 1.09001 * 110.84527 * 100.19435 * 12 10 9 41 41 H 1.09005 * 110.51350 * 336.97851 * 12 10 9 42 42 H 1.09005 * 111.00198 * 277.23930 * 13 12 10 43 43 H 1.08991 * 111.00129 * 153.38188 * 13 12 10 44 44 H 1.09001 * 110.36819 * 204.15495 * 14 13 12 45 45 H 1.08999 * 110.45484 * 81.87742 * 14 13 12 46 46 H 1.08999 * 109.47933 * 59.99998 * 18 16 15 47 47 H 1.09005 * 109.47312 * 299.99544 * 18 16 15 48 48 H 0.97003 * 119.99871 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4390 -2.4244 -0.0836 6 8 0.2336 -2.4222 -0.2450 7 7 2.1031 -3.5926 0.0182 8 6 3.5553 -3.5952 0.2121 9 6 1.3732 -4.8600 -0.0661 10 6 1.4226 -5.3824 -1.5034 11 1 2.4548 -5.4177 -1.8519 12 6 0.5908 -4.4669 -2.4264 13 6 -0.0909 -5.4713 -3.3929 14 6 -0.3493 -6.6777 -2.4561 15 7 0.8267 -6.7248 -1.5682 16 6 1.2774 -7.8166 -0.9189 17 8 2.3132 -7.7636 -0.2903 18 6 0.4944 -9.1029 -0.9742 19 16 1.3515 -10.3728 -0.0103 20 6 0.2491 -11.7279 -0.2410 21 1 -0.6413 -11.6039 -0.8393 22 6 0.5258 -12.9551 0.3454 23 7 1.6119 -13.1068 1.0735 24 14 -0.6425 -14.3920 0.1003 25 1 -0.2391 -15.1577 -1.1065 26 1 -0.5915 -15.2797 1.2897 27 1 -2.0254 -13.8809 -0.0770 28 1 -0.3634 -0.5145 0.8896 29 1 -0.3634 1.0276 0.0007 30 1 -0.3633 -0.5132 -0.8904 31 1 3.3321 1.1060 0.0005 32 1 1.9971 1.8765 -0.8901 33 1 1.9971 1.8768 0.8899 34 1 3.2502 -1.1528 0.0627 35 1 4.0512 -3.6455 -0.7572 36 1 3.8547 -2.6821 0.7265 37 1 3.8403 -4.4600 0.8114 38 1 0.3354 -4.7019 0.2275 39 1 1.8325 -5.5890 0.6014 40 1 1.2356 -3.7805 -2.9753 41 1 -0.1551 -3.9195 -1.8501 42 1 0.5794 -5.7458 -4.2075 43 1 -1.0273 -5.0683 -3.7783 44 1 -0.4247 -7.5982 -3.0350 45 1 -1.2577 -6.5206 -1.8745 46 1 0.4061 -9.4304 -2.0101 47 1 -0.5001 -8.9411 -0.5583 48 1 1.8054 -13.9646 1.4830 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279777495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:26 Heat of formation + Delta-G solvation = -51.373669 kcal Electronic energy + Delta-G solvation = -27527.954927 eV Core-core repulsion = 23709.684715 eV Total energy + Delta-G solvation = -3818.270212 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.55250 -39.54218 -37.23484 -36.12613 -35.28925 -32.42547 -31.82675 -30.95967 -28.83649 -28.20951 -27.99186 -27.00495 -25.49933 -25.25294 -22.87318 -21.30701 -20.39589 -18.97303 -18.32118 -17.69119 -17.52338 -16.69937 -16.41520 -15.71628 -15.38169 -14.89224 -14.79645 -14.55466 -14.32762 -14.20171 -13.96835 -13.78750 -13.58670 -13.24358 -13.11704 -12.86457 -12.73422 -12.65571 -12.53954 -12.49776 -12.31759 -12.16841 -11.97213 -11.70426 -11.64785 -11.29385 -11.05979 -11.01583 -10.94685 -10.77893 -10.73866 -9.81088 -9.70608 -9.43666 -9.36851 -9.06221 -8.96345 -8.32382 -8.23209 -6.49657 -6.21325 -3.91726 1.11075 2.68410 3.03974 3.08507 3.13962 3.22774 3.28250 3.32321 3.66256 4.20705 4.29516 4.46037 4.49860 4.51068 4.75457 4.82582 5.00318 5.02750 5.06956 5.09495 5.13881 5.14298 5.22352 5.28200 5.32246 5.37514 5.44044 5.52298 5.57285 5.61091 5.64832 5.68725 5.71797 5.75643 5.83023 5.84779 5.90513 6.00022 6.13621 6.16180 6.20314 6.24065 6.34452 6.58778 7.27711 7.60206 7.70458 8.07618 8.35831 8.55633 9.24097 10.86090 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023831 B = 0.002203 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.673343 B =12705.207427 C =13221.065030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.034 4.034 3 C -0.127 4.127 4 C -0.238 4.238 5 C 0.546 3.454 6 O -0.540 6.540 7 N -0.608 5.608 8 C 0.077 3.923 9 C 0.105 3.895 10 C 0.128 3.872 11 H 0.072 0.928 12 C -0.129 4.129 13 C -0.132 4.132 14 C 0.102 3.898 15 N -0.620 5.620 16 C 0.549 3.451 17 O -0.516 6.516 18 C -0.147 4.147 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 27.732 -6.279 28.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.035 4.035 3 C -0.183 4.183 4 C -0.259 4.259 5 C 0.338 3.662 6 O -0.420 6.420 7 N -0.340 5.340 8 C -0.066 4.066 9 C -0.019 4.019 10 C 0.023 3.977 11 H 0.090 0.910 12 C -0.167 4.167 13 C -0.170 4.170 14 C -0.022 4.022 15 N -0.358 5.358 16 C 0.338 3.662 17 O -0.391 6.391 18 C -0.298 4.298 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.145 0.855 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.108 0.892 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.926 27.573 -5.257 28.085 hybrid contribution -1.662 -1.147 -0.912 2.216 sum -0.736 26.427 -6.169 27.147 Atomic orbital electron populations 1.21040 0.90789 1.01080 1.04545 1.22596 0.96959 0.94456 0.89535 1.21020 0.99841 0.94531 1.02921 1.22508 1.00208 0.91925 1.11240 1.18571 0.87056 0.84108 0.76489 1.90731 1.14236 1.87250 1.49744 1.47633 1.08394 1.05797 1.72208 1.21882 0.79616 1.03422 1.01724 1.21890 0.98638 0.84350 0.96995 1.21821 0.97927 0.82322 0.95604 0.90978 1.22815 0.99796 0.96959 0.97089 1.22769 1.01384 0.95315 0.97545 1.22299 0.88728 0.99331 0.91806 1.48566 1.30485 1.08126 1.48633 1.20044 0.85111 0.83399 0.77619 1.90683 1.23164 1.83724 1.41480 1.23523 1.03339 0.96985 1.05932 1.85355 1.32333 1.01837 1.63866 1.22859 1.10692 0.97071 1.37633 0.90932 1.24992 0.95836 0.98265 0.94504 1.70019 1.24382 1.25055 1.30849 0.86169 0.80459 0.80970 0.77916 1.20276 1.20750 1.19681 0.90384 0.93051 0.89248 0.91434 0.90447 0.90600 0.85503 0.92558 0.90819 0.90469 0.89387 0.89196 0.91051 0.88753 0.90827 0.89945 0.90319 0.91307 0.89354 0.89221 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 8.35 36.00 0.30 -0.70 16 2 C -0.03 -0.26 6.11 -101.17 -0.62 -0.88 16 3 C -0.13 -0.61 10.04 36.01 0.36 -0.25 16 4 C -0.24 -2.06 8.77 -37.80 -0.33 -2.39 16 5 C 0.55 6.25 7.09 -12.67 -0.09 6.16 16 6 O -0.54 -7.30 10.67 5.26 0.06 -7.24 16 7 N -0.61 -6.87 2.79 -182.97 -0.51 -7.38 16 8 C 0.08 0.66 10.22 59.85 0.61 1.28 16 9 C 0.10 1.42 5.06 -4.04 -0.02 1.40 16 10 C 0.13 1.70 3.07 -66.94 -0.21 1.50 16 11 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 12 C -0.13 -1.41 5.77 -24.89 -0.14 -1.56 16 13 C -0.13 -1.28 7.09 -24.58 -0.17 -1.45 16 14 C 0.10 1.20 6.65 -2.52 -0.02 1.18 16 15 N -0.62 -9.37 3.06 -163.00 -0.50 -9.87 16 16 C 0.55 10.66 7.57 -10.99 -0.08 10.57 16 17 O -0.52 -11.63 15.06 5.56 0.08 -11.55 16 18 C -0.15 -3.06 5.25 36.00 0.19 -2.87 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 20 C -0.53 -15.31 9.50 30.94 0.29 -15.01 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 24 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.08 0.78 7.59 -51.93 -0.39 0.38 16 29 H 0.05 0.33 8.00 -51.93 -0.42 -0.08 16 30 H 0.09 0.90 6.86 -51.92 -0.36 0.54 16 31 H 0.07 0.27 7.81 -51.93 -0.41 -0.13 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.13 0.83 6.08 -52.49 -0.32 0.51 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.47 6.04 -51.93 -0.31 0.16 16 37 H 0.08 0.73 7.97 -51.93 -0.41 0.32 16 38 H 0.09 1.29 7.12 -51.93 -0.37 0.92 16 39 H 0.09 1.42 6.71 -51.93 -0.35 1.07 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.15 5.82 -51.93 -0.30 0.85 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.89 7.51 -51.93 -0.39 0.50 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.09 1.71 7.76 -51.92 -0.40 1.31 16 47 H 0.09 1.76 8.14 -51.91 -0.42 1.33 16 48 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 396.97 15.07 5.98 5.98 Total: -1.00 -34.64 396.97 -9.19 -43.84 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -7.78 Total: 0.11 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -0.02 Total: -1.02 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -0.28 Total: -42.75 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.14 Total: -18.79 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.64 -9.19 -43.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279777495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.537 kcal (2) G-P(sol) polarization free energy of solvation -34.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds