Wall clock time and date at job start Sat Apr 11 2020 06:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50702 * 119.99723 * 2 1 4 4 C 1.32995 * 120.00191 * 179.97438 * 2 1 3 5 5 C 1.47106 * 120.00079 * 3.81164 * 4 2 1 6 6 O 1.21617 * 119.99350 * 4.99519 * 5 4 2 7 7 N 1.34770 * 120.00179 * 184.99682 * 5 4 2 8 8 C 1.46503 * 120.00070 * 359.97438 * 7 5 4 9 9 C 1.46497 * 120.00041 * 180.02562 * 7 5 4 10 10 C 1.53005 * 109.47138 * 95.21569 * 9 7 5 11 11 H 1.08997 * 109.99892 * 52.49786 * 10 9 7 12 12 C 1.54336 * 109.99247 * 291.45861 * 10 9 7 13 13 C 1.55158 * 103.02304 * 218.66699 * 12 10 9 14 14 C 1.54913 * 101.58112 * 35.30592 * 13 12 10 15 15 N 1.47023 * 109.87860 * 173.59470 * 10 9 7 16 16 C 1.34780 * 125.65045 * 298.39075 * 15 10 9 17 17 O 1.21281 * 119.99601 * 354.30990 * 16 15 10 18 18 C 1.50692 * 120.00021 * 174.31286 * 16 15 10 19 19 S 1.81007 * 109.46975 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99703 * 179.97438 * 19 18 16 21 21 H 1.07992 * 120.00653 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99601 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00242 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99892 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47376 * 89.99855 * 24 22 20 26 26 H 1.48501 * 109.46719 * 209.99753 * 24 22 20 27 27 H 1.48498 * 109.47021 * 329.99509 * 24 22 20 28 28 H 1.09001 * 109.47283 * 239.95598 * 1 2 3 29 29 H 1.08995 * 109.47469 * 359.95921 * 1 2 3 30 30 H 1.09007 * 109.46793 * 119.95947 * 1 2 3 31 31 H 1.09005 * 109.46799 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46442 * 299.98962 * 3 2 1 33 33 H 1.08994 * 109.47601 * 59.99544 * 3 2 1 34 34 H 1.07999 * 120.00438 * 183.81138 * 4 2 1 35 35 H 1.08995 * 109.47122 * 267.86862 * 8 7 5 36 36 H 1.09002 * 109.46782 * 27.86955 * 8 7 5 37 37 H 1.09002 * 109.46848 * 147.86517 * 8 7 5 38 38 H 1.09007 * 109.47297 * 335.21715 * 9 7 5 39 39 H 1.08993 * 109.47286 * 215.21911 * 9 7 5 40 40 H 1.09001 * 110.84527 * 100.19435 * 12 10 9 41 41 H 1.09005 * 110.51350 * 336.97851 * 12 10 9 42 42 H 1.09005 * 111.00198 * 277.23930 * 13 12 10 43 43 H 1.08991 * 111.00129 * 153.38188 * 13 12 10 44 44 H 1.09001 * 110.36819 * 204.15495 * 14 13 12 45 45 H 1.08999 * 110.45484 * 81.87742 * 14 13 12 46 46 H 1.08999 * 109.47933 * 59.99998 * 18 16 15 47 47 H 1.09005 * 109.47312 * 299.99544 * 18 16 15 48 48 H 0.97003 * 119.99871 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4390 -2.4244 -0.0836 6 8 0.2336 -2.4222 -0.2450 7 7 2.1031 -3.5926 0.0182 8 6 3.5553 -3.5952 0.2121 9 6 1.3732 -4.8600 -0.0661 10 6 1.4226 -5.3824 -1.5034 11 1 2.4548 -5.4177 -1.8519 12 6 0.5908 -4.4669 -2.4264 13 6 -0.0909 -5.4713 -3.3929 14 6 -0.3493 -6.6777 -2.4561 15 7 0.8267 -6.7248 -1.5682 16 6 1.2774 -7.8166 -0.9189 17 8 2.3132 -7.7636 -0.2903 18 6 0.4944 -9.1029 -0.9742 19 16 1.3515 -10.3728 -0.0103 20 6 0.2491 -11.7279 -0.2410 21 1 -0.6413 -11.6039 -0.8393 22 6 0.5258 -12.9551 0.3454 23 7 1.6119 -13.1068 1.0735 24 14 -0.6425 -14.3920 0.1003 25 1 -0.2391 -15.1577 -1.1065 26 1 -0.5915 -15.2797 1.2897 27 1 -2.0254 -13.8809 -0.0770 28 1 -0.3634 -0.5145 0.8896 29 1 -0.3634 1.0276 0.0007 30 1 -0.3633 -0.5132 -0.8904 31 1 3.3321 1.1060 0.0005 32 1 1.9971 1.8765 -0.8901 33 1 1.9971 1.8768 0.8899 34 1 3.2502 -1.1528 0.0627 35 1 4.0512 -3.6455 -0.7572 36 1 3.8547 -2.6821 0.7265 37 1 3.8403 -4.4600 0.8114 38 1 0.3354 -4.7019 0.2275 39 1 1.8325 -5.5890 0.6014 40 1 1.2356 -3.7805 -2.9753 41 1 -0.1551 -3.9195 -1.8501 42 1 0.5794 -5.7458 -4.2075 43 1 -1.0273 -5.0683 -3.7783 44 1 -0.4247 -7.5982 -3.0350 45 1 -1.2577 -6.5206 -1.8745 46 1 0.4061 -9.4304 -2.0101 47 1 -0.5001 -8.9411 -0.5583 48 1 1.8054 -13.9646 1.4830 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279777495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:25 Heat of formation + Delta-G solvation = -72.345917 kcal Electronic energy + Delta-G solvation = -27528.864352 eV Core-core repulsion = 23709.684715 eV Total energy + Delta-G solvation = -3819.179637 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.61281 -40.67459 -38.53469 -36.94067 -36.06753 -34.60094 -33.12689 -31.93674 -30.27711 -28.90325 -28.61671 -27.85727 -27.67103 -26.20403 -24.03421 -22.23273 -21.31712 -20.39697 -19.53705 -19.05540 -18.49442 -18.02018 -17.49818 -16.89698 -16.69923 -16.49837 -16.26753 -15.90673 -15.43005 -15.18573 -14.82435 -14.77874 -14.66569 -14.40554 -14.11061 -14.07941 -13.78953 -13.64494 -13.54517 -13.35138 -13.27112 -13.17812 -13.10034 -12.92416 -12.86142 -12.63318 -12.50686 -12.28786 -12.18888 -11.91309 -11.75395 -11.70308 -11.15536 -10.97662 -10.53924 -10.30666 -10.15825 -9.97249 -9.43125 -8.68954 -8.36136 -6.14473 0.42708 1.20340 1.41338 1.41851 1.50249 1.54769 1.85608 2.24240 2.26810 2.31968 2.97922 3.20934 3.44356 3.55586 3.65868 3.83584 3.91341 3.94070 4.09725 4.13470 4.18168 4.24611 4.31339 4.35566 4.43012 4.54974 4.59446 4.61658 4.69172 4.71946 4.77123 4.80972 4.87145 4.88734 4.95144 4.97335 5.02344 5.05392 5.17666 5.24746 5.35272 5.40406 5.48464 5.58336 5.66563 6.18393 6.34961 6.44444 7.04986 7.06452 7.20570 8.73079 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023831 B = 0.002203 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.673343 B =12705.207427 C =13221.065030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.025 4.025 3 C -0.124 4.124 4 C -0.252 4.252 5 C 0.539 3.461 6 O -0.567 6.567 7 N -0.610 5.610 8 C 0.074 3.926 9 C 0.115 3.885 10 C 0.128 3.872 11 H 0.066 0.934 12 C -0.116 4.116 13 C -0.119 4.119 14 C 0.090 3.910 15 N -0.613 5.613 16 C 0.548 3.452 17 O -0.558 6.558 18 C -0.121 4.121 19 S -0.145 6.145 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.999 3.001 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.259 1.259 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.151 0.849 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.220 29.568 -8.100 30.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.027 4.027 3 C -0.180 4.180 4 C -0.272 4.272 5 C 0.332 3.668 6 O -0.449 6.449 7 N -0.343 5.343 8 C -0.068 4.068 9 C -0.010 4.010 10 C 0.024 3.976 11 H 0.084 0.916 12 C -0.154 4.154 13 C -0.157 4.157 14 C -0.032 4.032 15 N -0.348 5.348 16 C 0.337 3.663 17 O -0.436 6.436 18 C -0.272 4.272 19 S 0.082 5.918 20 C -0.695 4.695 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.183 1.183 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.169 0.831 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.127 0.873 44 H 0.106 0.894 45 H 0.097 0.903 46 H 0.125 0.875 47 H 0.121 0.879 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.162 29.457 -7.108 30.303 hybrid contribution -1.361 -1.548 -0.362 2.093 sum -1.523 27.909 -7.470 28.931 Atomic orbital electron populations 1.20985 0.91779 1.01876 1.02779 1.22898 0.96556 0.95666 0.87544 1.21086 1.00157 0.92838 1.03965 1.22572 1.01229 0.90543 1.12885 1.19128 0.86967 0.84843 0.75825 1.90717 1.15485 1.87647 1.51079 1.47709 1.09340 1.04965 1.72264 1.22033 0.78090 1.04196 1.02489 1.21568 0.97754 0.85017 0.96631 1.21943 0.98033 0.81696 0.95973 0.91639 1.22700 0.99320 0.96697 0.96710 1.22775 1.02681 0.93508 0.96755 1.22649 0.87616 1.01027 0.91913 1.48524 1.31077 1.07676 1.47531 1.19765 0.84613 0.84008 0.77949 1.90665 1.24902 1.84440 1.43568 1.23323 1.02943 0.95520 1.05458 1.85514 1.34979 1.04974 1.66306 1.23188 1.10883 0.97478 1.37901 0.90018 1.26132 0.97661 1.01499 0.93836 1.70180 1.26521 1.26013 1.31956 0.84952 0.78215 0.76671 0.78133 1.19198 1.20220 1.18275 0.92335 0.90887 0.90959 0.90191 0.89207 0.89471 0.83126 0.91442 0.88078 0.91905 0.90867 0.92100 0.89846 0.89826 0.89931 0.87333 0.89394 0.90339 0.87549 0.87864 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 8.35 71.24 0.60 -1.31 16 2 C -0.02 -0.33 6.11 -17.62 -0.11 -0.44 16 3 C -0.12 -0.79 10.04 71.24 0.72 -0.08 16 4 C -0.25 -3.94 8.77 23.43 0.21 -3.73 16 5 C 0.54 12.19 7.09 86.57 0.61 12.81 16 6 O -0.57 -15.57 10.67 -4.08 -0.04 -15.62 16 7 N -0.61 -13.97 2.79 -851.06 -2.38 -16.35 16 8 C 0.07 1.26 10.22 127.77 1.31 2.56 16 9 C 0.12 3.27 5.06 86.38 0.44 3.70 16 10 C 0.13 3.40 3.07 45.35 0.14 3.54 16 11 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 12 C -0.12 -2.38 5.77 31.79 0.18 -2.20 16 13 C -0.12 -1.98 7.09 31.99 0.23 -1.76 16 14 C 0.09 1.95 6.65 86.86 0.58 2.53 16 15 N -0.61 -18.37 3.06 -788.01 -2.41 -20.78 16 16 C 0.55 21.72 7.57 87.65 0.66 22.39 16 17 O -0.56 -26.38 15.06 -3.03 -0.05 -26.42 16 18 C -0.12 -5.08 5.25 71.23 0.37 -4.70 16 19 S -0.14 -8.19 20.57 -56.49 -1.16 -9.35 16 20 C -0.55 -31.64 9.50 67.95 0.65 -30.99 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.78 5.49 84.86 0.47 1.24 16 23 N -0.91 -56.27 13.22 21.65 0.29 -55.99 16 24 Si 1.00 44.00 29.55 68.60 2.03 46.02 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 28 H 0.06 1.18 7.59 -2.39 -0.02 1.16 16 29 H 0.07 0.82 8.00 -2.39 -0.02 0.80 16 30 H 0.07 1.44 6.86 -2.38 -0.02 1.42 16 31 H 0.08 0.35 7.81 -2.38 -0.02 0.33 16 32 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.15 1.55 6.08 -2.91 -0.02 1.53 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.10 1.13 6.04 -2.39 -0.01 1.12 16 37 H 0.06 1.25 7.97 -2.39 -0.02 1.23 16 38 H 0.07 2.26 7.12 -2.38 -0.02 2.24 16 39 H 0.06 2.08 6.71 -2.39 -0.02 2.06 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.08 1.97 5.82 -2.38 -0.01 1.96 16 42 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.09 1.78 7.51 -2.39 -0.02 1.77 16 45 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.11 4.04 7.76 -2.40 -0.02 4.02 16 47 H 0.10 4.01 8.14 -2.39 -0.02 3.99 16 48 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -78.86 396.97 4.26 -74.60 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.95 Total: 20.33 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 7.04 Total: 3.56 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -4.50 Total: -93.12 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -0.09 Total: -42.04 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.16 Total: -9.35 kcal Total: -78.86 4.26 -74.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279777495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.253 kcal (2) G-P(sol) polarization free energy of solvation -78.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds