Wall clock time and date at job start Sat Apr 11 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50706 * 109.47020 * 2 1 4 4 C 1.50700 * 119.99865 * 274.99286 * 3 2 1 5 5 C 1.32986 * 119.99949 * 95.27732 * 3 2 1 6 6 C 1.47102 * 119.99759 * 185.41316 * 5 3 2 7 7 O 1.21612 * 120.00324 * 5.63450 * 6 5 3 8 8 N 1.34783 * 119.99752 * 185.63416 * 6 5 3 9 9 C 1.46504 * 119.99691 * 179.97438 * 8 6 5 10 10 C 1.53774 * 113.61436 * 254.13676 * 9 8 6 11 11 C 1.53955 * 87.02012 * 220.04913 * 10 9 8 12 12 C 1.52998 * 113.66653 * 139.93324 * 11 10 9 13 13 N 1.46500 * 109.47282 * 87.44108 * 12 11 10 14 14 C 1.34776 * 120.00330 * 179.97438 * 13 12 11 15 15 O 1.21286 * 119.99899 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00150 * 179.97438 * 14 13 12 17 17 S 1.81005 * 109.47327 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00132 * 180.02562 * 17 16 14 19 19 H 1.07996 * 120.00274 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99920 * 180.02562 * 18 17 16 21 21 N 1.31637 * 120.00101 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00056 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46945 * 90.00006 * 22 20 18 24 24 H 1.48504 * 109.47553 * 209.99828 * 22 20 18 25 25 H 1.48505 * 109.47359 * 330.00304 * 22 20 18 26 26 C 1.53776 * 87.10909 * 25.36461 * 11 10 9 27 27 H 1.09003 * 109.47758 * 300.00056 * 1 2 3 28 28 H 1.09006 * 109.47161 * 60.00187 * 1 2 3 29 29 H 1.09003 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47364 * 239.99564 * 2 1 3 31 31 H 1.09002 * 109.46707 * 119.99624 * 2 1 3 32 32 H 1.09005 * 109.46851 * 354.84286 * 4 3 2 33 33 H 1.08997 * 109.46903 * 114.83421 * 4 3 2 34 34 H 1.08990 * 109.47585 * 234.83927 * 4 3 2 35 35 H 1.08009 * 120.00283 * 5.40487 * 5 3 2 36 36 H 0.96993 * 120.00325 * 359.97438 * 8 6 5 37 37 H 1.09003 * 112.85103 * 25.33839 * 9 8 6 38 38 H 1.09000 * 113.61893 * 334.57124 * 10 9 8 39 39 H 1.09001 * 113.61699 * 105.47111 * 10 9 8 40 40 H 1.08997 * 113.61336 * 270.79865 * 11 10 9 41 41 H 1.08999 * 109.47367 * 207.44136 * 12 11 10 42 42 H 1.09002 * 109.47092 * 327.44479 * 12 11 10 43 43 H 0.97002 * 119.99908 * 359.97438 * 13 12 11 44 44 H 1.09000 * 109.47774 * 300.00034 * 16 14 13 45 45 H 1.08996 * 109.47145 * 60.00417 * 16 14 13 46 46 H 0.96992 * 119.99635 * 180.02562 * 21 20 18 47 47 H 1.08998 * 113.61392 * 220.08659 * 26 11 10 48 48 H 1.09004 * 113.69289 * 89.20281 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.1763 2.1691 -1.3002 5 6 2.3538 2.0125 1.1468 6 6 2.7298 3.4345 1.1607 7 8 2.6484 4.0950 0.1428 8 7 3.1647 4.0055 2.3015 9 6 3.5398 5.4216 2.3151 10 6 5.0583 5.6561 2.3769 11 6 4.7597 6.8082 3.3534 12 6 5.7503 6.9006 4.5157 13 7 6.8959 7.7220 4.1168 14 6 7.9016 7.9437 4.9863 15 8 7.8584 7.4627 6.0989 16 6 9.0802 8.7882 4.5758 17 16 10.2522 8.8976 5.9509 18 6 11.4922 9.9111 5.2161 19 1 11.3732 10.2595 4.2009 20 6 12.6220 10.2617 5.9422 21 7 13.5481 11.0193 5.3935 22 14 12.8275 9.6597 7.6985 23 1 13.5385 8.3559 7.6948 24 1 13.6164 10.6514 8.4728 25 1 11.4911 9.4929 8.3243 26 6 3.4604 6.0665 3.7089 27 1 -0.3635 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.9603 1.4979 -2.1315 33 1 1.4774 3.0053 -1.3174 34 1 3.1951 2.5452 -1.3921 35 1 2.3386 1.4489 2.0681 36 1 3.2293 3.4789 3.1135 37 1 3.0400 5.9994 1.5376 38 1 5.6094 4.8318 2.8296 39 1 5.4882 5.9848 1.4307 40 1 4.5947 7.7664 2.8608 41 1 5.2595 7.3550 5.3763 42 1 6.0947 5.9007 4.7798 43 1 6.9306 8.1065 3.2269 44 1 9.5714 8.3332 3.7157 45 1 8.7361 9.7879 4.3109 46 1 14.3378 11.2639 5.9008 47 1 2.6020 6.7260 3.8367 48 1 3.5722 5.3544 4.5266 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279994478.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:29 Heat of formation + Delta-G solvation = -57.909529 kcal Electronic energy + Delta-G solvation = -25512.294825 eV Core-core repulsion = 21693.741197 eV Total energy + Delta-G solvation = -3818.553628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.64132 -39.50849 -38.66038 -36.56425 -34.72449 -33.44666 -32.43386 -31.41841 -30.03696 -28.37131 -27.04079 -26.11220 -25.59678 -24.74018 -22.89605 -21.10338 -20.70542 -20.03489 -18.86230 -17.88785 -17.38286 -16.74280 -16.38113 -15.88883 -15.57478 -15.43661 -15.21641 -15.01235 -14.93519 -14.68130 -14.24798 -13.88081 -13.71137 -13.52000 -13.27743 -12.98999 -12.88637 -12.79702 -12.69870 -12.54381 -12.33366 -12.13050 -11.92848 -11.88107 -11.54945 -11.42373 -11.26869 -11.09156 -11.00451 -10.73474 -10.57808 -9.92575 -9.85115 -9.67388 -9.51008 -9.23447 -9.01252 -8.94150 -8.49733 -6.91394 -6.28551 -4.00264 0.95381 2.76102 2.88987 2.92966 2.98612 3.31322 3.34727 3.50727 3.65715 4.06858 4.17313 4.22894 4.31265 4.33613 4.42531 4.45630 4.65823 4.71463 4.74834 4.76601 4.96261 5.03105 5.10537 5.13958 5.16502 5.28910 5.30484 5.36348 5.37299 5.37868 5.44894 5.47207 5.60271 5.62749 5.66064 5.71607 5.74573 5.79610 5.95574 6.02609 6.06323 6.10010 6.24272 6.54658 7.19629 7.62242 7.92824 7.94575 8.42173 8.50022 9.17682 10.80732 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027976 B = 0.001444 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.627259 B =19386.433932 C =19508.209732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.025 4.025 4 C -0.118 4.118 5 C -0.238 4.238 6 C 0.546 3.454 7 O -0.542 6.542 8 N -0.719 5.719 9 C 0.123 3.877 10 C -0.146 4.146 11 C -0.120 4.120 12 C 0.134 3.866 13 N -0.736 5.736 14 C 0.530 3.470 15 O -0.521 6.521 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.135 4.135 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.401 0.599 37 H 0.115 0.885 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.400 0.600 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.078 0.922 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.431 -19.915 -10.882 36.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.136 4.136 3 C -0.027 4.027 4 C -0.174 4.174 5 C -0.259 4.259 6 C 0.336 3.664 7 O -0.421 6.421 8 N -0.369 5.369 9 C 0.018 3.982 10 C -0.185 4.185 11 C -0.140 4.140 12 C 0.010 3.990 13 N -0.390 5.390 14 C 0.316 3.684 15 O -0.396 6.396 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.174 4.174 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.143 0.857 36 H 0.235 0.765 37 H 0.133 0.867 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.119 0.881 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.234 0.766 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -28.395 -20.148 -9.723 36.149 hybrid contribution 0.557 0.384 -0.512 0.848 sum -27.838 -19.764 -10.234 35.641 Atomic orbital electron populations 1.21707 0.93943 1.02180 1.02527 1.20794 0.96741 0.92592 1.03429 1.22598 0.89315 0.95279 0.95464 1.21039 1.03940 0.99586 0.92821 1.22373 1.09928 0.94448 0.99168 1.18612 0.76614 0.87949 0.83195 1.90779 1.53905 1.65024 1.32429 1.45908 1.67250 1.11380 1.12321 1.22488 0.95575 0.81645 0.98459 1.23602 0.96526 0.98301 1.00082 1.22639 0.95576 0.98922 0.96836 1.21239 0.85763 0.95693 0.96289 1.45955 1.21285 1.54352 1.17413 1.20282 0.82984 0.80439 0.84728 1.90697 1.78554 1.49832 1.20542 1.23281 0.97301 1.02095 1.04830 1.84774 1.20168 1.68461 1.18222 1.22324 1.05504 1.35528 1.03575 0.89392 1.24711 0.94372 0.93663 0.98520 1.69941 1.09231 1.34901 1.37647 0.86735 0.81099 0.79387 0.84622 1.19219 1.19931 1.15931 1.23317 0.97741 0.99543 0.96806 0.92357 0.92247 0.91948 0.90388 0.90681 0.92851 0.89537 0.90257 0.85718 0.76463 0.86736 0.89394 0.90711 0.88057 0.91426 0.91523 0.76626 0.88514 0.88459 0.91949 0.90303 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.89 37.15 0.37 -0.19 16 2 C -0.10 -0.41 6.04 -27.88 -0.17 -0.58 16 3 C -0.02 -0.16 5.36 -101.17 -0.54 -0.70 16 4 C -0.12 -0.87 8.34 36.01 0.30 -0.57 16 5 C -0.24 -1.59 9.63 -37.81 -0.36 -1.95 16 6 C 0.55 4.83 7.69 -12.66 -0.10 4.74 16 7 O -0.54 -6.48 12.82 5.27 0.07 -6.41 16 8 N -0.72 -4.86 5.36 -54.20 -0.29 -5.15 16 9 C 0.12 0.87 4.21 -67.12 -0.28 0.59 16 10 C -0.15 -1.09 7.44 -25.83 -0.19 -1.28 16 11 C -0.12 -0.85 3.75 -89.72 -0.34 -1.19 16 12 C 0.13 1.37 5.51 -4.04 -0.02 1.35 16 13 N -0.74 -9.04 5.56 -60.30 -0.33 -9.38 16 14 C 0.53 9.32 7.85 -10.99 -0.09 9.24 16 15 O -0.52 -11.20 15.86 5.55 0.09 -11.11 16 16 C -0.12 -2.40 6.16 36.00 0.22 -2.18 16 17 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 18 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 19 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 20 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.65 13.97 55.49 0.78 -25.87 16 22 Si 0.86 21.83 27.74 -169.99 -4.71 17.11 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 26 C -0.14 -0.79 7.39 -25.92 -0.19 -0.98 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 0.28 8.11 -51.93 -0.42 -0.14 16 31 H 0.07 0.26 7.99 -51.93 -0.41 -0.16 16 32 H 0.05 0.30 7.98 -51.93 -0.41 -0.12 16 33 H 0.09 0.76 7.10 -51.93 -0.37 0.39 16 34 H 0.08 0.71 7.40 -51.93 -0.38 0.32 16 35 H 0.12 0.55 8.00 -52.48 -0.42 0.13 16 36 H 0.40 1.78 8.69 -40.82 -0.35 1.42 16 37 H 0.11 0.97 7.50 -51.93 -0.39 0.58 16 38 H 0.09 0.69 7.90 -51.93 -0.41 0.28 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 43 H 0.40 3.84 8.47 -40.82 -0.35 3.49 16 44 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 46 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.09 0.47 8.07 -51.93 -0.42 0.05 16 LS Contribution 410.29 15.07 6.18 6.18 Total: -1.00 -35.87 410.29 -9.53 -45.40 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -8.13 Total: 0.61 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -1.18 Total: -5.77 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.15 Total: -40.39 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.16 Total: -17.52 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.87 -9.53 -45.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279994478.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.505 kcal (2) G-P(sol) polarization free energy of solvation -35.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds