Wall clock time and date at job start Sat Apr 11 2020 06:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32998 * 120.00050 * 2 1 4 4 C 1.50700 * 119.99833 * 0.02562 * 3 2 1 5 5 C 1.47107 * 120.00032 * 179.97438 * 3 2 1 6 6 O 1.21616 * 119.99881 * 0.02562 * 5 3 2 7 7 N 1.34778 * 119.99531 * 180.02562 * 5 3 2 8 8 C 1.46497 * 119.99399 * 185.04114 * 7 5 3 9 9 C 1.52996 * 110.05990 * 294.89205 * 8 7 5 10 10 N 1.46504 * 109.46700 * 306.56711 * 9 8 7 11 11 C 1.34779 * 119.99964 * 175.02619 * 10 9 8 12 12 O 1.21283 * 119.99896 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00219 * 179.97438 * 11 10 9 14 14 S 1.80997 * 109.47173 * 179.97438 * 13 11 10 15 15 C 1.76208 * 100.00013 * 180.02562 * 14 13 11 16 16 H 1.08008 * 119.99598 * 359.97438 * 15 14 13 17 17 C 1.38792 * 120.00104 * 180.02562 * 15 14 13 18 18 N 1.31632 * 119.99957 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99961 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47183 * 60.00007 * 19 17 15 21 21 H 1.48496 * 109.46931 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46948 * 299.99716 * 19 17 15 23 23 C 1.53877 * 110.03315 * 56.30905 * 8 7 5 24 24 C 1.54267 * 106.60263 * 119.28376 * 23 8 7 25 25 C 1.54894 * 104.19183 * 336.38917 * 24 23 8 26 26 C 1.54271 * 110.03285 * 173.47029 * 8 7 5 27 27 H 1.09003 * 109.47134 * 60.00099 * 1 2 3 28 28 H 1.08998 * 109.47089 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47267 * 299.99842 * 1 2 3 30 30 H 1.08007 * 120.00157 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47064 * 269.99833 * 4 3 2 32 32 H 1.09001 * 109.46656 * 30.00019 * 4 3 2 33 33 H 1.09004 * 109.46743 * 149.99443 * 4 3 2 34 34 H 0.96992 * 120.00257 * 5.04673 * 7 5 3 35 35 H 1.08995 * 109.47430 * 66.56726 * 9 8 7 36 36 H 1.09001 * 109.47568 * 186.57246 * 9 8 7 37 37 H 0.97000 * 120.00295 * 355.01985 * 10 9 8 38 38 H 1.09002 * 109.47298 * 300.00104 * 13 11 10 39 39 H 1.09010 * 109.47024 * 59.99878 * 13 11 10 40 40 H 0.96998 * 119.99958 * 179.97438 * 18 17 15 41 41 H 1.09003 * 110.03095 * 238.56511 * 23 8 7 42 42 H 1.09006 * 110.03279 * 359.97438 * 23 8 7 43 43 H 1.08998 * 110.48851 * 95.06778 * 24 23 8 44 44 H 1.08999 * 110.48586 * 217.71579 * 24 23 8 45 45 H 1.09002 * 110.75285 * 279.62846 * 25 24 23 46 46 H 1.08995 * 110.75459 * 156.25709 * 25 24 23 47 47 H 1.09003 * 110.48279 * 23.00530 * 26 8 7 48 48 H 1.08996 * 110.48372 * 145.64729 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4184 2.4569 0.0006 5 6 3.6430 1.1518 0.0006 6 8 4.2511 0.0985 0.0006 7 7 4.3168 2.3191 0.0011 8 6 5.7776 2.3215 -0.1098 9 6 6.3985 1.6605 1.1223 10 7 5.8822 2.3030 2.3335 11 6 6.2138 1.8190 3.5469 12 8 6.9394 0.8512 3.6360 13 6 5.6832 2.4802 4.7927 14 16 6.3020 1.6044 6.2508 15 6 5.5481 2.5603 7.5247 16 1 4.9221 3.4026 7.2691 17 6 5.7595 2.2316 8.8565 18 7 6.5229 1.2055 9.1679 19 14 4.9609 3.2455 10.2069 20 1 3.4845 3.1964 10.0554 21 1 5.3406 2.6922 11.5316 22 1 5.4222 4.6536 10.1074 23 6 6.2108 1.5743 -1.3834 24 6 6.9758 2.5930 -2.2534 25 6 6.4484 3.9698 -1.7784 26 6 6.2945 3.7682 -0.2505 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 2.0470 -0.9354 -0.0004 31 1 1.2364 2.7717 -1.0269 32 1 0.4662 2.3263 0.5148 33 1 2.0077 3.2164 0.5145 34 1 3.8346 3.1574 0.0750 35 1 6.1413 0.6014 1.1350 36 1 7.4824 1.7708 1.0865 37 1 5.3016 3.0768 2.2622 38 1 6.0158 3.5177 4.8232 39 1 4.5936 2.4480 4.7852 40 1 6.6710 0.9760 10.0986 41 1 6.8634 0.7408 -1.1235 42 1 5.3341 1.2095 -1.9187 43 1 8.0487 2.5144 -2.0785 44 1 6.7481 2.4406 -3.3084 45 1 5.4856 4.1939 -2.2375 46 1 7.1724 4.7557 -1.9933 47 1 5.5696 4.4735 0.1562 48 1 7.2574 3.8793 0.2480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499459882.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:19 Heat of formation + Delta-G solvation = -75.276598 kcal Electronic energy + Delta-G solvation = -27728.698325 eV Core-core repulsion = 23909.391605 eV Total energy + Delta-G solvation = -3819.306720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.86982 -38.95562 -38.12752 -35.70306 -34.42410 -33.50374 -32.40387 -30.46519 -29.45350 -29.16914 -28.10185 -26.43681 -25.49256 -24.41452 -22.47615 -21.32722 -20.16646 -19.59311 -18.75515 -17.84566 -17.28117 -16.79982 -16.29453 -15.76616 -15.25513 -15.20497 -15.08114 -14.78997 -14.77245 -14.03677 -13.96792 -13.82494 -13.71026 -13.47302 -13.05646 -12.96586 -12.86937 -12.61285 -12.58402 -12.38467 -12.10568 -11.74626 -11.64293 -11.54050 -11.45291 -11.36763 -11.12372 -11.02391 -11.01987 -10.88031 -10.74834 -9.89388 -9.80251 -9.39695 -9.30941 -9.15774 -9.03909 -8.73059 -8.19612 -6.46346 -6.18839 -3.89165 1.17247 2.89920 3.11715 3.13360 3.20871 3.24594 3.29000 3.34359 3.78201 4.10797 4.22880 4.26964 4.45731 4.50136 4.61442 4.87825 4.89756 4.94604 5.06755 5.11815 5.15838 5.15913 5.20433 5.25410 5.30844 5.35156 5.37723 5.39910 5.54673 5.57282 5.61763 5.64099 5.68673 5.73990 5.79235 5.92473 5.92863 6.00888 6.08482 6.16463 6.17405 6.26961 6.39788 6.72306 7.33651 7.61170 7.79777 8.11050 8.37260 8.71971 9.25937 10.88544 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010920 B = 0.002844 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.473035 B = 9842.361713 C =11320.580406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.071 4.071 3 C -0.196 4.196 4 C -0.116 4.116 5 C 0.557 3.443 6 O -0.531 6.531 7 N -0.719 5.719 8 C 0.166 3.834 9 C 0.115 3.885 10 N -0.732 5.732 11 C 0.530 3.470 12 O -0.516 6.516 13 C -0.152 4.152 14 S -0.059 6.059 15 C -0.536 4.536 16 H 0.071 0.929 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.117 4.117 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.127 4.127 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.398 0.602 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.392 0.608 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.269 0.731 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.374 7.189 -26.403 28.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.199 4.199 4 C -0.172 4.172 5 C 0.346 3.654 6 O -0.408 6.408 7 N -0.373 5.373 8 C 0.079 3.921 9 C -0.010 4.010 10 N -0.386 5.386 11 C 0.316 3.684 12 O -0.390 6.390 13 C -0.302 4.302 14 S 0.168 5.832 15 C -0.685 4.685 16 H 0.089 0.911 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.156 4.156 24 C -0.163 4.163 25 C -0.160 4.160 26 C -0.165 4.165 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.144 0.856 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.234 0.766 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.225 0.775 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.616 4.690 -26.120 27.609 hybrid contribution -1.882 2.549 0.841 3.278 sum -9.498 7.239 -25.279 27.958 Atomic orbital electron populations 1.20999 0.92131 1.03168 1.02534 1.23603 0.96290 0.98067 0.91082 1.21414 0.92734 0.96768 1.09001 1.20802 1.00252 0.93985 1.02209 1.18339 0.87639 0.83691 0.75773 1.90805 1.69836 1.31198 1.48961 1.46105 1.06569 1.08825 1.75768 1.21253 0.79622 0.96046 0.95141 1.21800 0.97818 0.99038 0.82329 1.45838 1.53240 1.34225 1.05336 1.20268 0.80351 0.83822 0.83950 1.90706 1.35750 1.26064 1.86513 1.23514 1.04124 1.04108 0.98490 1.85428 1.65035 1.40619 0.92123 1.22833 1.35500 1.17489 0.92630 0.91053 1.24988 0.95141 0.95434 0.98005 1.70012 1.35531 1.25787 1.18947 0.86231 0.79501 0.79892 0.79908 1.19970 1.20809 1.19952 1.22399 1.00901 0.98173 0.94079 1.22407 1.00136 0.94438 0.99366 1.22494 1.01252 0.97483 0.94789 1.22728 1.02406 0.93957 0.97433 0.90849 0.91349 0.90492 0.85554 0.91128 0.90856 0.91913 0.76586 0.89501 0.91233 0.77459 0.89399 0.89513 0.92141 0.90435 0.90866 0.91212 0.91515 0.91445 0.91141 0.90851 0.89410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 8.91 36.00 0.32 -0.50 16 2 C -0.07 -0.66 9.84 -36.13 -0.36 -1.01 16 3 C -0.20 -1.84 6.00 -102.84 -0.62 -2.45 16 4 C -0.12 -0.70 9.18 36.01 0.33 -0.37 16 5 C 0.56 6.52 6.79 -12.66 -0.09 6.43 16 6 O -0.53 -8.31 13.51 5.26 0.07 -8.23 16 7 N -0.72 -6.37 4.51 -47.73 -0.22 -6.58 16 8 C 0.17 1.57 0.56 -130.70 -0.07 1.50 16 9 C 0.12 1.56 4.05 -4.04 -0.02 1.55 16 10 N -0.73 -10.57 5.22 -60.29 -0.31 -10.89 16 11 C 0.53 10.57 7.85 -10.99 -0.09 10.48 16 12 O -0.52 -12.58 15.86 5.56 0.09 -12.49 16 13 C -0.15 -3.18 6.16 36.00 0.22 -2.96 16 14 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 15 C -0.54 -15.53 9.50 30.94 0.29 -15.23 16 16 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 17 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 18 N -0.87 -26.56 13.22 55.49 0.73 -25.83 16 19 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 C -0.12 -1.11 5.22 -25.61 -0.13 -1.25 16 24 C -0.13 -0.89 6.83 -25.07 -0.17 -1.07 16 25 C -0.12 -0.74 6.91 -24.74 -0.17 -0.91 16 26 C -0.13 -0.89 5.69 -25.07 -0.14 -1.04 16 27 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.46 7.40 -51.93 -0.38 0.07 16 30 H 0.13 1.37 7.49 -52.48 -0.39 0.97 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.40 6.49 -51.93 -0.34 0.06 16 33 H 0.06 0.32 6.64 -51.93 -0.34 -0.02 16 34 H 0.40 2.46 6.30 -40.82 -0.26 2.20 16 35 H 0.09 1.50 6.60 -51.93 -0.34 1.16 16 36 H 0.07 0.95 8.00 -51.93 -0.42 0.54 16 37 H 0.39 4.44 8.01 -40.82 -0.33 4.11 16 38 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 39 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 40 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.08 0.84 7.67 -51.93 -0.40 0.44 16 42 H 0.07 0.78 6.99 -51.93 -0.36 0.41 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.41 7.70 -51.93 -0.40 0.01 16 48 H 0.09 0.68 7.76 -51.93 -0.40 0.27 16 LS Contribution 399.15 15.07 6.02 6.02 Total: -1.00 -37.19 399.15 -9.35 -46.55 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.71 Total: 3.54 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -0.78 Total: -4.80 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.20 Total: -43.29 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.16 Total: -20.72 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.19 -9.35 -46.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499459882.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.730 kcal (2) G-P(sol) polarization free energy of solvation -37.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds