Wall clock time and date at job start Sat Apr 11 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32998 * 120.00050 * 2 1 4 4 C 1.50700 * 119.99833 * 0.02562 * 3 2 1 5 5 C 1.47107 * 120.00032 * 179.97438 * 3 2 1 6 6 O 1.21616 * 119.99881 * 0.02562 * 5 3 2 7 7 N 1.34778 * 119.99531 * 180.02562 * 5 3 2 8 8 C 1.46497 * 119.99399 * 185.04114 * 7 5 3 9 9 C 1.52996 * 110.05990 * 294.89205 * 8 7 5 10 10 N 1.46504 * 109.46700 * 306.56711 * 9 8 7 11 11 C 1.34779 * 119.99964 * 175.02619 * 10 9 8 12 12 O 1.21283 * 119.99896 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00219 * 179.97438 * 11 10 9 14 14 S 1.80997 * 109.47173 * 179.97438 * 13 11 10 15 15 C 1.76208 * 100.00013 * 180.02562 * 14 13 11 16 16 H 1.08008 * 119.99598 * 359.97438 * 15 14 13 17 17 C 1.38792 * 120.00104 * 180.02562 * 15 14 13 18 18 N 1.31632 * 119.99957 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99961 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47183 * 60.00007 * 19 17 15 21 21 H 1.48496 * 109.46931 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46948 * 299.99716 * 19 17 15 23 23 C 1.53877 * 110.03315 * 56.30905 * 8 7 5 24 24 C 1.54267 * 106.60263 * 119.28376 * 23 8 7 25 25 C 1.54894 * 104.19183 * 336.38917 * 24 23 8 26 26 C 1.54271 * 110.03285 * 173.47029 * 8 7 5 27 27 H 1.09003 * 109.47134 * 60.00099 * 1 2 3 28 28 H 1.08998 * 109.47089 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47267 * 299.99842 * 1 2 3 30 30 H 1.08007 * 120.00157 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47064 * 269.99833 * 4 3 2 32 32 H 1.09001 * 109.46656 * 30.00019 * 4 3 2 33 33 H 1.09004 * 109.46743 * 149.99443 * 4 3 2 34 34 H 0.96992 * 120.00257 * 5.04673 * 7 5 3 35 35 H 1.08995 * 109.47430 * 66.56726 * 9 8 7 36 36 H 1.09001 * 109.47568 * 186.57246 * 9 8 7 37 37 H 0.97000 * 120.00295 * 355.01985 * 10 9 8 38 38 H 1.09002 * 109.47298 * 300.00104 * 13 11 10 39 39 H 1.09010 * 109.47024 * 59.99878 * 13 11 10 40 40 H 0.96998 * 119.99958 * 179.97438 * 18 17 15 41 41 H 1.09003 * 110.03095 * 238.56511 * 23 8 7 42 42 H 1.09006 * 110.03279 * 359.97438 * 23 8 7 43 43 H 1.08998 * 110.48851 * 95.06778 * 24 23 8 44 44 H 1.08999 * 110.48586 * 217.71579 * 24 23 8 45 45 H 1.09002 * 110.75285 * 279.62846 * 25 24 23 46 46 H 1.08995 * 110.75459 * 156.25709 * 25 24 23 47 47 H 1.09003 * 110.48279 * 23.00530 * 26 8 7 48 48 H 1.08996 * 110.48372 * 145.64729 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4184 2.4569 0.0006 5 6 3.6430 1.1518 0.0006 6 8 4.2511 0.0985 0.0006 7 7 4.3168 2.3191 0.0011 8 6 5.7776 2.3215 -0.1098 9 6 6.3985 1.6605 1.1223 10 7 5.8822 2.3030 2.3335 11 6 6.2138 1.8190 3.5469 12 8 6.9394 0.8512 3.6360 13 6 5.6832 2.4802 4.7927 14 16 6.3020 1.6044 6.2508 15 6 5.5481 2.5603 7.5247 16 1 4.9221 3.4026 7.2691 17 6 5.7595 2.2316 8.8565 18 7 6.5229 1.2055 9.1679 19 14 4.9609 3.2455 10.2069 20 1 3.4845 3.1964 10.0554 21 1 5.3406 2.6922 11.5316 22 1 5.4222 4.6536 10.1074 23 6 6.2108 1.5743 -1.3834 24 6 6.9758 2.5930 -2.2534 25 6 6.4484 3.9698 -1.7784 26 6 6.2945 3.7682 -0.2505 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 2.0470 -0.9354 -0.0004 31 1 1.2364 2.7717 -1.0269 32 1 0.4662 2.3263 0.5148 33 1 2.0077 3.2164 0.5145 34 1 3.8346 3.1574 0.0750 35 1 6.1413 0.6014 1.1350 36 1 7.4824 1.7708 1.0865 37 1 5.3016 3.0768 2.2622 38 1 6.0158 3.5177 4.8232 39 1 4.5936 2.4480 4.7852 40 1 6.6710 0.9760 10.0986 41 1 6.8634 0.7408 -1.1235 42 1 5.3341 1.2095 -1.9187 43 1 8.0487 2.5144 -2.0785 44 1 6.7481 2.4406 -3.3084 45 1 5.4856 4.1939 -2.2375 46 1 7.1724 4.7557 -1.9933 47 1 5.5696 4.4735 0.1562 48 1 7.2574 3.8793 0.2480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499459882.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:18 Heat of formation + Delta-G solvation = -101.619778 kcal Electronic energy + Delta-G solvation = -27729.840651 eV Core-core repulsion = 23909.391605 eV Total energy + Delta-G solvation = -3820.449046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.79830 -40.41102 -39.04359 -36.42930 -35.63380 -34.59370 -34.50223 -31.72276 -30.35774 -29.83049 -29.10280 -27.67707 -27.03092 -25.47948 -23.26271 -22.14493 -21.48859 -20.53938 -19.80041 -19.50292 -18.02572 -17.96409 -17.76568 -16.89231 -16.87360 -16.59754 -16.13580 -15.89665 -15.84001 -15.61162 -15.07438 -14.67913 -14.53028 -14.44267 -14.31359 -14.11837 -14.07241 -13.40585 -13.34806 -13.31238 -13.17926 -12.98190 -12.86098 -12.78484 -12.62452 -12.36377 -12.17803 -12.07603 -11.98406 -11.90327 -11.75537 -11.45646 -11.13155 -11.02005 -10.84454 -10.29119 -10.22925 -10.12545 -9.89061 -8.68811 -8.34634 -6.13990 0.40236 1.25047 1.44274 1.45973 1.55688 1.58163 2.08008 2.26863 2.27667 2.31982 2.99335 3.30526 3.38378 3.52958 3.74483 3.78962 3.96852 4.00031 4.21678 4.24388 4.29179 4.33429 4.45024 4.45378 4.47773 4.51991 4.61463 4.72352 4.74399 4.81570 4.84041 4.86619 4.90603 5.04650 5.06101 5.06660 5.17388 5.22279 5.24979 5.34688 5.40646 5.46419 5.49134 5.58092 5.67273 6.19093 6.45088 6.58118 7.05911 7.21146 7.27251 8.74552 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010920 B = 0.002844 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.473035 B = 9842.361713 C =11320.580406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.082 4.082 3 C -0.204 4.204 4 C -0.112 4.112 5 C 0.546 3.454 6 O -0.581 6.581 7 N -0.703 5.703 8 C 0.172 3.828 9 C 0.118 3.882 10 N -0.702 5.702 11 C 0.529 3.471 12 O -0.569 6.569 13 C -0.125 4.125 14 S -0.155 6.155 15 C -0.547 4.547 16 H 0.085 0.915 17 C 0.012 3.988 18 N -0.913 5.913 19 Si 1.001 2.999 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.260 1.260 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.114 4.114 26 C -0.123 4.123 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.416 0.584 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.413 0.587 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.271 0.729 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.732 11.346 -27.417 31.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.102 4.102 3 C -0.207 4.207 4 C -0.168 4.168 5 C 0.336 3.664 6 O -0.463 6.463 7 N -0.357 5.357 8 C 0.085 3.915 9 C -0.007 4.007 10 N -0.356 5.356 11 C 0.315 3.685 12 O -0.448 6.448 13 C -0.276 4.276 14 S 0.072 5.928 15 C -0.694 4.694 16 H 0.103 0.897 17 C -0.193 4.193 18 N -0.549 5.549 19 Si 0.822 3.178 20 H -0.186 1.186 21 H -0.205 1.205 22 H -0.184 1.184 23 C -0.155 4.155 24 C -0.160 4.160 25 C -0.151 4.151 26 C -0.161 4.161 27 H 0.111 0.889 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.255 0.745 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.250 0.750 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.104 0.896 47 H 0.118 0.882 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.016 8.932 -27.186 30.318 hybrid contribution -1.124 1.175 1.019 1.919 sum -11.140 10.106 -26.167 30.182 Atomic orbital electron populations 1.21014 0.89555 1.03848 1.03715 1.23753 0.98144 0.97113 0.91179 1.21621 0.91430 0.98582 1.09046 1.20869 1.00256 0.92001 1.03698 1.18911 0.88890 0.83580 0.74984 1.90794 1.71022 1.33134 1.51310 1.45978 1.06255 1.08937 1.74502 1.21206 0.79815 0.97709 0.92752 1.21821 0.98138 0.97289 0.83464 1.45514 1.52116 1.33981 1.03940 1.20190 0.79921 0.83215 0.85139 1.90696 1.38356 1.28448 1.87276 1.23331 1.04854 1.04183 0.95225 1.85685 1.66738 1.43639 0.96752 1.23178 1.35616 1.17679 0.92950 0.89692 1.26177 0.95516 0.96616 1.00950 1.70193 1.37239 1.27878 1.19624 0.84970 0.78741 0.78250 0.75819 1.18568 1.20493 1.18396 1.22349 1.00298 0.98330 0.94499 1.22405 0.99817 0.94481 0.99315 1.22480 1.02309 0.96752 0.93558 1.22752 1.02760 0.91872 0.98688 0.88931 0.91098 0.89624 0.88457 0.89305 0.89897 0.90665 0.74476 0.93601 0.91441 0.75043 0.86701 0.87528 0.91998 0.92917 0.92105 0.91150 0.90608 0.90156 0.89574 0.88248 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.91 71.23 0.63 -0.74 16 2 C -0.08 -1.53 9.84 24.52 0.24 -1.29 16 3 C -0.20 -3.63 6.00 -18.70 -0.11 -3.74 16 4 C -0.11 -0.99 9.18 71.24 0.65 -0.33 16 5 C 0.55 12.85 6.79 86.57 0.59 13.44 16 6 O -0.58 -19.56 13.51 -4.08 -0.06 -19.61 16 7 N -0.70 -11.33 4.51 -423.18 -1.91 -13.24 16 8 C 0.17 3.10 0.56 4.33 0.00 3.10 16 9 C 0.12 3.28 4.05 86.38 0.35 3.63 16 10 N -0.70 -19.66 5.22 -463.06 -2.42 -22.08 16 11 C 0.53 21.22 7.85 87.66 0.69 21.91 16 12 O -0.57 -29.01 15.86 -3.04 -0.05 -29.06 16 13 C -0.12 -5.12 6.16 71.23 0.44 -4.68 16 14 S -0.16 -8.90 20.57 -56.49 -1.16 -10.06 16 15 C -0.55 -31.57 9.50 67.95 0.65 -30.93 16 16 H 0.08 4.50 7.80 -2.91 -0.02 4.47 16 17 C 0.01 0.69 5.49 84.86 0.47 1.16 16 18 N -0.91 -57.03 13.22 21.65 0.29 -56.75 16 19 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 20 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 23 C -0.12 -2.24 5.22 31.32 0.16 -2.08 16 24 C -0.12 -1.55 6.83 31.67 0.22 -1.33 16 25 C -0.11 -0.97 6.91 31.88 0.22 -0.75 16 26 C -0.12 -1.33 5.69 31.67 0.18 -1.15 16 27 H 0.09 0.68 8.10 -2.39 -0.02 0.66 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 0.82 7.40 -2.39 -0.02 0.81 16 30 H 0.10 2.34 7.49 -2.91 -0.02 2.32 16 31 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.61 6.49 -2.39 -0.02 0.60 16 33 H 0.07 0.47 6.64 -2.38 -0.02 0.45 16 34 H 0.42 3.69 6.30 -92.71 -0.58 3.10 16 35 H 0.05 1.71 6.60 -2.39 -0.02 1.69 16 36 H 0.07 1.92 8.00 -2.39 -0.02 1.90 16 37 H 0.41 8.17 8.01 -92.71 -0.74 7.43 16 38 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 39 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 40 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 41 H 0.05 1.26 7.67 -2.39 -0.02 1.24 16 42 H 0.06 1.33 6.99 -2.38 -0.02 1.31 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.10 0.61 7.70 -2.39 -0.02 0.59 16 48 H 0.08 1.05 7.76 -2.39 -0.02 1.03 16 Total: -1.00 -87.29 399.15 1.75 -85.55 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -0.35 Total: 23.32 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 5.38 Total: -3.79 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -4.04 Total: -92.06 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -0.10 Total: -48.68 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.16 Total: -10.06 kcal Total: -87.29 1.75 -85.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499459882.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.072 kcal (2) G-P(sol) polarization free energy of solvation -87.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds