Wall clock time and date at job start Sat Apr 11 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32986 * 119.99909 * 2 1 4 4 C 1.50705 * 119.99661 * 180.02562 * 3 2 1 5 5 C 1.47105 * 120.00433 * 0.02562 * 3 2 1 6 6 O 1.21617 * 119.99532 * 0.02562 * 5 3 2 7 7 N 1.34773 * 119.99944 * 179.97438 * 5 3 2 8 8 C 1.46501 * 119.99485 * 175.00196 * 7 5 3 9 9 C 1.52992 * 109.47475 * 304.27709 * 8 7 5 10 10 C 1.53005 * 109.47081 * 64.27965 * 8 7 5 11 11 N 1.46500 * 109.47098 * 59.99771 * 10 8 7 12 12 C 1.34784 * 119.99860 * 180.02562 * 11 10 8 13 13 O 1.21279 * 119.99795 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99987 * 179.97438 * 12 11 10 15 15 S 1.80993 * 109.47237 * 179.97438 * 14 12 11 16 16 C 1.76196 * 100.00095 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00429 * 0.02562 * 16 15 14 18 18 C 1.38806 * 120.00185 * 180.02562 * 16 15 14 19 19 N 1.31637 * 119.99418 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 119.99995 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47102 * 90.00274 * 20 18 16 22 22 H 1.48506 * 109.47116 * 209.99902 * 20 18 16 23 23 H 1.48500 * 109.47328 * 329.99960 * 20 18 16 24 24 C 1.52999 * 109.47027 * 184.27390 * 8 7 5 25 25 C 1.53003 * 117.49898 * 132.69537 * 24 8 7 26 26 C 1.52999 * 117.49490 * 64.04247 * 24 8 7 27 27 H 1.09004 * 109.47176 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47044 * 299.99969 * 1 2 3 29 29 H 1.08997 * 109.47368 * 60.00350 * 1 2 3 30 30 H 1.08002 * 119.99894 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47300 * 90.00756 * 4 3 2 32 32 H 1.09006 * 109.47155 * 209.99815 * 4 3 2 33 33 H 1.08999 * 109.47158 * 329.99947 * 4 3 2 34 34 H 0.96995 * 120.00273 * 355.00335 * 7 5 3 35 35 H 1.09003 * 109.46812 * 59.99874 * 9 8 7 36 36 H 1.09006 * 109.47497 * 179.97438 * 9 8 7 37 37 H 1.09000 * 109.47386 * 300.00115 * 9 8 7 38 38 H 1.08998 * 109.46853 * 179.97438 * 10 8 7 39 39 H 1.09003 * 109.46986 * 299.99991 * 10 8 7 40 40 H 0.97002 * 120.00280 * 0.02562 * 11 10 8 41 41 H 1.09001 * 109.47101 * 300.00354 * 14 12 11 42 42 H 1.09003 * 109.47013 * 59.99458 * 14 12 11 43 43 H 0.97003 * 119.99165 * 179.97438 * 19 18 16 44 44 H 1.08993 * 115.55492 * 278.37281 * 24 8 7 45 45 H 1.09004 * 117.49672 * 0.02562 * 25 24 8 46 46 H 1.09000 * 117.49801 * 145.01805 * 25 24 8 47 47 H 1.09005 * 117.50080 * 214.97965 * 26 24 8 48 48 H 1.08997 * 117.50284 * 359.97438 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6789 1.1516 -0.0006 5 6 1.4364 2.4257 0.0006 6 8 0.2203 2.4257 0.0015 7 7 2.1104 3.5928 0.0011 8 6 1.3820 4.8592 -0.1089 9 6 0.5162 4.8417 -1.3701 10 6 0.4893 5.0425 1.1201 11 7 1.3184 5.0592 2.3278 12 6 0.7438 5.2100 3.5377 13 8 -0.4595 5.3322 3.6264 14 6 1.5966 5.2266 4.7801 15 16 0.5406 5.4436 6.2339 16 6 1.7614 5.4263 7.5042 17 1 2.8041 5.3060 7.2496 18 6 1.3832 5.5673 8.8323 19 7 0.1125 5.7145 9.1426 20 14 2.6775 5.5483 10.1790 21 1 3.1546 6.9326 10.4266 22 1 2.0868 4.9980 11.4255 23 1 3.8199 4.6992 9.7557 24 6 2.3800 6.0160 -0.1913 25 6 2.1541 7.0678 -1.2793 26 6 3.3042 6.0662 -1.4096 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.0470 -0.9353 -0.0004 31 1 4.0419 1.1520 -1.0284 32 1 4.0425 2.0415 0.5133 33 1 4.0424 0.2615 0.5129 34 1 3.0776 3.5944 0.0743 35 1 -0.1948 4.0176 -1.3113 36 1 -0.0261 5.7838 -1.4517 37 1 1.1522 4.7112 -2.2457 38 1 -0.0522 5.9849 1.0385 39 1 -0.2217 4.2183 1.1789 40 1 2.2809 4.9618 2.2568 41 1 2.1385 4.2844 4.8614 42 1 2.3077 6.0507 4.7216 43 1 -0.1518 5.8127 10.0707 44 1 2.7847 6.3566 0.7617 45 1 1.2942 6.9358 -1.9361 46 1 2.4103 8.1003 -1.0421 47 1 4.3168 6.4402 -1.2582 48 1 3.2015 5.2749 -2.1521 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499613910.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:24 Heat of formation + Delta-G solvation = -34.027870 kcal Electronic energy + Delta-G solvation = -27879.585732 eV Core-core repulsion = 24062.067691 eV Total energy + Delta-G solvation = -3817.518041 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.92506 -39.05644 -38.34980 -35.42311 -34.83606 -33.68836 -32.40585 -31.34402 -29.85650 -29.22543 -26.25088 -25.46242 -25.21109 -24.12245 -22.78132 -22.37979 -20.26428 -19.53300 -19.35755 -17.86621 -16.91793 -16.51572 -16.34594 -15.95100 -15.37983 -15.12721 -14.84137 -14.78617 -14.53210 -14.34180 -14.01827 -13.66434 -13.56935 -13.22620 -12.97464 -12.85081 -12.81825 -12.73787 -12.55906 -12.49307 -12.16933 -11.89612 -11.73488 -11.63637 -11.49308 -11.42089 -11.04925 -11.00360 -10.75586 -10.74296 -10.50971 -9.79645 -9.55782 -9.43375 -9.31336 -9.08426 -9.04779 -8.70799 -8.19641 -6.46685 -6.19397 -3.89492 1.19619 2.78503 3.09893 3.10892 3.20293 3.23395 3.29434 3.34879 3.53756 3.79506 4.15789 4.22521 4.37406 4.49567 4.58304 4.62300 4.69515 4.88457 4.95047 5.05723 5.15517 5.17690 5.23583 5.24526 5.27634 5.44072 5.47774 5.50395 5.57045 5.59360 5.64897 5.68666 5.72881 5.77053 5.81987 5.89711 5.92466 6.05721 6.07825 6.16296 6.27183 6.34286 6.38616 6.71807 7.36884 7.61317 7.79198 8.10720 8.37174 8.71543 9.25658 10.88038 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011449 B = 0.002816 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.072290 B = 9942.548738 C =10961.049994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.065 4.065 3 C -0.202 4.202 4 C -0.112 4.112 5 C 0.555 3.445 6 O -0.526 6.526 7 N -0.720 5.720 8 C 0.201 3.799 9 C -0.166 4.166 10 C 0.115 3.885 11 N -0.733 5.733 12 C 0.530 3.470 13 O -0.516 6.516 14 C -0.152 4.152 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.168 4.168 25 C -0.167 4.167 26 C -0.174 4.174 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.399 0.601 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.392 0.608 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.268 0.732 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.784 -5.957 -26.195 28.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.084 4.084 3 C -0.205 4.205 4 C -0.169 4.169 5 C 0.345 3.655 6 O -0.404 6.404 7 N -0.373 5.373 8 C 0.115 3.885 9 C -0.224 4.224 10 C -0.010 4.010 11 N -0.387 5.387 12 C 0.316 3.684 13 O -0.390 6.390 14 C -0.303 4.303 15 S 0.168 5.832 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.187 4.187 25 C -0.204 4.204 26 C -0.211 4.211 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.140 0.860 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.235 0.765 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.226 0.774 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.131 0.869 45 H 0.122 0.878 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.744 -5.716 -25.918 27.384 hybrid contribution 3.379 -0.158 0.861 3.491 sum 10.123 -5.874 -25.058 27.656 Atomic orbital electron populations 1.21051 0.91577 1.01064 1.04311 1.23651 0.97382 0.96629 0.90778 1.21443 0.96294 0.93230 1.09526 1.20744 0.91038 1.02963 1.02175 1.18344 0.87298 0.83858 0.76027 1.90761 1.13459 1.87317 1.48877 1.46034 1.10484 1.05041 1.75779 1.19976 0.90997 0.81881 0.95611 1.22283 1.00569 1.04064 0.95480 1.21692 0.93577 1.03343 0.82374 1.45882 1.10250 1.76788 1.05804 1.20262 0.88759 0.75489 0.83877 1.90705 1.14757 1.47297 1.86276 1.23514 1.03503 1.04701 0.98538 1.85422 1.09952 1.95100 0.92752 1.22872 0.94596 1.57924 0.93000 0.91009 1.24993 0.96016 0.94588 0.97997 1.70028 1.15088 1.46126 1.19015 0.86173 0.80651 0.78417 0.80278 1.20288 1.20750 1.19725 1.22523 1.01734 0.99093 0.95306 1.23127 1.00734 0.95441 1.01118 1.22977 0.95655 1.02603 0.99899 0.93079 0.89704 0.90141 0.85980 0.91302 0.91829 0.91177 0.76509 0.89637 0.91082 0.92167 0.91072 0.89287 0.77401 0.89488 0.89440 0.92205 0.86867 0.87766 0.88403 0.88544 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 8.45 36.00 0.30 -0.94 16 2 C -0.06 -0.56 9.95 -36.13 -0.36 -0.92 16 3 C -0.20 -1.79 6.00 -102.84 -0.62 -2.41 16 4 C -0.11 -0.66 9.65 36.01 0.35 -0.32 16 5 C 0.56 6.03 7.13 -12.67 -0.09 5.94 16 6 O -0.53 -7.27 9.30 5.26 0.05 -7.22 16 7 N -0.72 -6.15 4.68 -48.78 -0.23 -6.38 16 8 C 0.20 1.87 0.54 -131.82 -0.07 1.79 16 9 C -0.17 -1.49 6.97 37.15 0.26 -1.23 16 10 C 0.12 1.54 4.44 -4.04 -0.02 1.53 16 11 N -0.73 -10.47 4.99 -60.29 -0.30 -10.77 16 12 C 0.53 10.46 7.85 -10.98 -0.09 10.37 16 13 O -0.52 -12.45 15.86 5.56 0.09 -12.36 16 14 C -0.15 -3.17 6.16 36.01 0.22 -2.94 16 15 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 16 C -0.54 -15.48 9.50 30.94 0.29 -15.18 16 17 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 20 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 C -0.17 -1.26 4.84 -90.62 -0.44 -1.70 16 25 C -0.17 -1.12 9.64 -26.70 -0.26 -1.37 16 26 C -0.17 -1.01 9.82 -26.70 -0.26 -1.27 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 1.07 7.22 -51.93 -0.37 0.69 16 29 H 0.08 0.87 7.22 -51.93 -0.38 0.50 16 30 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.33 6.64 -51.93 -0.34 -0.01 16 33 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 34 H 0.40 2.54 6.55 -40.82 -0.27 2.27 16 35 H 0.08 0.96 6.03 -51.93 -0.31 0.65 16 36 H 0.07 0.59 6.79 -51.93 -0.35 0.23 16 37 H 0.06 0.47 6.99 -51.93 -0.36 0.10 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.47 6.31 -51.93 -0.33 1.15 16 40 H 0.39 4.44 7.43 -40.82 -0.30 4.14 16 41 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 42 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.11 0.91 7.08 -51.93 -0.37 0.55 16 45 H 0.10 0.67 5.88 -51.93 -0.31 0.36 16 46 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.10 0.54 7.35 -51.93 -0.38 0.15 16 LS Contribution 396.65 15.07 5.98 5.98 Total: -1.00 -35.95 396.65 -9.21 -45.16 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.42 Total: 5.28 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.87 Total: -6.64 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.20 Total: -42.90 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.14 Total: -19.58 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.95 -9.21 -45.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499613910.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.133 kcal (2) G-P(sol) polarization free energy of solvation -35.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds