Wall clock time and date at job start Sat Apr 11 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32986 * 119.99909 * 2 1 4 4 C 1.50705 * 119.99661 * 180.02562 * 3 2 1 5 5 C 1.47105 * 120.00433 * 0.02562 * 3 2 1 6 6 O 1.21617 * 119.99532 * 0.02562 * 5 3 2 7 7 N 1.34773 * 119.99944 * 179.97438 * 5 3 2 8 8 C 1.46501 * 119.99485 * 175.00196 * 7 5 3 9 9 C 1.52992 * 109.47475 * 304.27709 * 8 7 5 10 10 C 1.53005 * 109.47081 * 64.27965 * 8 7 5 11 11 N 1.46500 * 109.47098 * 59.99771 * 10 8 7 12 12 C 1.34784 * 119.99860 * 180.02562 * 11 10 8 13 13 O 1.21279 * 119.99795 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99987 * 179.97438 * 12 11 10 15 15 S 1.80993 * 109.47237 * 179.97438 * 14 12 11 16 16 C 1.76196 * 100.00095 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00429 * 0.02562 * 16 15 14 18 18 C 1.38806 * 120.00185 * 180.02562 * 16 15 14 19 19 N 1.31637 * 119.99418 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 119.99995 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47102 * 90.00274 * 20 18 16 22 22 H 1.48506 * 109.47116 * 209.99902 * 20 18 16 23 23 H 1.48500 * 109.47328 * 329.99960 * 20 18 16 24 24 C 1.52999 * 109.47027 * 184.27390 * 8 7 5 25 25 C 1.53003 * 117.49898 * 132.69537 * 24 8 7 26 26 C 1.52999 * 117.49490 * 64.04247 * 24 8 7 27 27 H 1.09004 * 109.47176 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47044 * 299.99969 * 1 2 3 29 29 H 1.08997 * 109.47368 * 60.00350 * 1 2 3 30 30 H 1.08002 * 119.99894 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47300 * 90.00756 * 4 3 2 32 32 H 1.09006 * 109.47155 * 209.99815 * 4 3 2 33 33 H 1.08999 * 109.47158 * 329.99947 * 4 3 2 34 34 H 0.96995 * 120.00273 * 355.00335 * 7 5 3 35 35 H 1.09003 * 109.46812 * 59.99874 * 9 8 7 36 36 H 1.09006 * 109.47497 * 179.97438 * 9 8 7 37 37 H 1.09000 * 109.47386 * 300.00115 * 9 8 7 38 38 H 1.08998 * 109.46853 * 179.97438 * 10 8 7 39 39 H 1.09003 * 109.46986 * 299.99991 * 10 8 7 40 40 H 0.97002 * 120.00280 * 0.02562 * 11 10 8 41 41 H 1.09001 * 109.47101 * 300.00354 * 14 12 11 42 42 H 1.09003 * 109.47013 * 59.99458 * 14 12 11 43 43 H 0.97003 * 119.99165 * 179.97438 * 19 18 16 44 44 H 1.08993 * 115.55492 * 278.37281 * 24 8 7 45 45 H 1.09004 * 117.49672 * 0.02562 * 25 24 8 46 46 H 1.09000 * 117.49801 * 145.01805 * 25 24 8 47 47 H 1.09005 * 117.50080 * 214.97965 * 26 24 8 48 48 H 1.08997 * 117.50284 * 359.97438 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6789 1.1516 -0.0006 5 6 1.4364 2.4257 0.0006 6 8 0.2203 2.4257 0.0015 7 7 2.1104 3.5928 0.0011 8 6 1.3820 4.8592 -0.1089 9 6 0.5162 4.8417 -1.3701 10 6 0.4893 5.0425 1.1201 11 7 1.3184 5.0592 2.3278 12 6 0.7438 5.2100 3.5377 13 8 -0.4595 5.3322 3.6264 14 6 1.5966 5.2266 4.7801 15 16 0.5406 5.4436 6.2339 16 6 1.7614 5.4263 7.5042 17 1 2.8041 5.3060 7.2496 18 6 1.3832 5.5673 8.8323 19 7 0.1125 5.7145 9.1426 20 14 2.6775 5.5483 10.1790 21 1 3.1546 6.9326 10.4266 22 1 2.0868 4.9980 11.4255 23 1 3.8199 4.6992 9.7557 24 6 2.3800 6.0160 -0.1913 25 6 2.1541 7.0678 -1.2793 26 6 3.3042 6.0662 -1.4096 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.0470 -0.9353 -0.0004 31 1 4.0419 1.1520 -1.0284 32 1 4.0425 2.0415 0.5133 33 1 4.0424 0.2615 0.5129 34 1 3.0776 3.5944 0.0743 35 1 -0.1948 4.0176 -1.3113 36 1 -0.0261 5.7838 -1.4517 37 1 1.1522 4.7112 -2.2457 38 1 -0.0522 5.9849 1.0385 39 1 -0.2217 4.2183 1.1789 40 1 2.2809 4.9618 2.2568 41 1 2.1385 4.2844 4.8614 42 1 2.3077 6.0507 4.7216 43 1 -0.1518 5.8127 10.0707 44 1 2.7847 6.3566 0.7617 45 1 1.2942 6.9358 -1.9361 46 1 2.4103 8.1003 -1.0421 47 1 4.3168 6.4402 -1.2582 48 1 3.2015 5.2749 -2.1521 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499613910.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:23 Heat of formation + Delta-G solvation = -58.665228 kcal Electronic energy + Delta-G solvation = -27880.654088 eV Core-core repulsion = 24062.067691 eV Total energy + Delta-G solvation = -3818.586397 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.80092 -40.43026 -39.24112 -36.20134 -35.74362 -34.84852 -34.58785 -32.31219 -30.93366 -30.32431 -27.77490 -27.13127 -25.94885 -24.98863 -23.37245 -22.98912 -21.80904 -20.41152 -20.07180 -19.82585 -17.97730 -17.63332 -17.54851 -16.88915 -16.87320 -16.62646 -16.08143 -16.00255 -15.71602 -15.29261 -15.05466 -14.76725 -14.64037 -14.43157 -14.19146 -13.96009 -13.80602 -13.62137 -13.49830 -13.25553 -13.17811 -13.17061 -12.89080 -12.84886 -12.70069 -12.54868 -12.34044 -12.14103 -12.05595 -11.74322 -11.29280 -11.14768 -11.11929 -11.01714 -10.46308 -10.28899 -10.21576 -10.04492 -9.81137 -8.68645 -8.35074 -6.14013 0.47268 1.25230 1.42545 1.46033 1.56614 1.58803 2.04895 2.26400 2.30141 2.31574 2.96403 2.99065 3.30876 3.48242 3.58967 3.84198 3.94559 3.97692 4.00073 4.08803 4.21535 4.25434 4.37402 4.44563 4.45432 4.51244 4.58047 4.71127 4.76030 4.79889 4.84048 4.85703 4.91158 4.91898 5.04033 5.04098 5.17935 5.27529 5.31481 5.32452 5.38667 5.40862 5.52322 5.58841 5.67344 6.19124 6.44982 6.65359 7.05763 7.21346 7.32738 8.74336 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011449 B = 0.002816 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.072290 B = 9942.548738 C =10961.049994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.072 4.072 3 C -0.207 4.207 4 C -0.109 4.109 5 C 0.543 3.457 6 O -0.563 6.563 7 N -0.707 5.707 8 C 0.213 3.787 9 C -0.161 4.161 10 C 0.117 3.883 11 N -0.703 5.703 12 C 0.530 3.470 13 O -0.568 6.568 14 C -0.125 4.125 15 S -0.153 6.153 16 C -0.546 4.546 17 H 0.084 0.916 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 1.001 2.999 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.257 1.257 24 C -0.179 4.179 25 C -0.172 4.172 26 C -0.151 4.151 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.152 0.848 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.414 0.586 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.412 0.588 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.271 0.729 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.102 0.898 47 H 0.111 0.889 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.034 -6.230 -27.415 31.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.091 4.091 3 C -0.210 4.210 4 C -0.166 4.166 5 C 0.333 3.667 6 O -0.444 6.444 7 N -0.361 5.361 8 C 0.126 3.874 9 C -0.219 4.219 10 C -0.008 4.008 11 N -0.356 5.356 12 C 0.316 3.684 13 O -0.447 6.447 14 C -0.277 4.277 15 S 0.074 5.926 16 C -0.694 4.694 17 H 0.102 0.898 18 C -0.192 4.192 19 N -0.549 5.549 20 Si 0.822 3.178 21 H -0.192 1.192 22 H -0.204 1.204 23 H -0.180 1.180 24 C -0.198 4.198 25 C -0.210 4.210 26 C -0.188 4.188 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.170 0.830 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.252 0.748 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.249 0.751 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.130 0.870 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.130 0.870 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.074 -5.990 -27.188 29.962 hybrid contribution 2.008 -0.074 1.101 2.291 sum 13.082 -6.065 -26.088 29.807 Atomic orbital electron populations 1.20932 0.93257 1.01346 1.02101 1.23869 0.96389 0.98039 0.90823 1.21700 0.98071 0.92074 1.09139 1.20798 0.88365 1.03878 1.03526 1.18877 0.87096 0.85147 0.75543 1.90770 1.15254 1.87911 1.50442 1.45933 1.11097 1.04184 1.74866 1.19792 0.91097 0.83111 0.93365 1.22229 1.00369 1.03329 0.95959 1.21712 0.94008 1.01531 0.83520 1.45569 1.11279 1.74325 1.04473 1.20154 0.87899 0.75334 0.85006 1.90694 1.16858 1.50078 1.87031 1.23333 1.02319 1.06602 0.95412 1.85660 1.14136 1.95565 0.97275 1.23204 0.94814 1.58008 0.93363 0.89786 1.26168 0.98493 0.93678 1.00881 1.70201 1.17704 1.47221 1.19746 0.84923 0.77556 0.79022 0.76279 1.19187 1.20359 1.18044 1.22383 1.02424 0.98779 0.96181 1.23222 1.01516 0.95697 1.00522 1.23046 0.95858 1.01892 0.98017 0.91388 0.93038 0.91551 0.83010 0.89630 0.90941 0.90251 0.74800 0.92268 0.90494 0.90219 0.91938 0.92654 0.75142 0.87528 0.86921 0.91996 0.87032 0.87654 0.88006 0.87043 0.87870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 8.45 71.24 0.60 -1.91 16 2 C -0.07 -1.17 9.95 24.52 0.24 -0.93 16 3 C -0.21 -3.37 6.00 -18.70 -0.11 -3.48 16 4 C -0.11 -0.93 9.65 71.24 0.69 -0.25 16 5 C 0.54 11.61 7.13 86.57 0.62 12.22 16 6 O -0.56 -16.45 9.30 -4.08 -0.04 -16.49 16 7 N -0.71 -10.96 4.68 -426.48 -1.99 -12.96 16 8 C 0.21 3.73 0.54 3.60 0.00 3.73 16 9 C -0.16 -2.81 6.97 71.98 0.50 -2.31 16 10 C 0.12 3.21 4.44 86.38 0.38 3.60 16 11 N -0.70 -19.67 4.99 -463.04 -2.31 -21.98 16 12 C 0.53 21.11 7.85 87.66 0.69 21.80 16 13 O -0.57 -28.65 15.86 -3.03 -0.05 -28.70 16 14 C -0.13 -5.16 6.16 71.24 0.44 -4.72 16 15 S -0.15 -8.77 20.57 -56.49 -1.16 -9.94 16 16 C -0.55 -31.57 9.50 67.96 0.65 -30.92 16 17 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 18 C 0.01 0.71 5.49 84.86 0.47 1.18 16 19 N -0.91 -56.87 13.22 21.65 0.29 -56.58 16 20 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 22 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 24 C -0.18 -2.25 4.84 -10.79 -0.05 -2.31 16 25 C -0.17 -1.87 9.64 30.62 0.30 -1.57 16 26 C -0.15 -1.19 9.82 30.62 0.30 -0.89 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 1.42 7.22 -2.39 -0.02 1.40 16 29 H 0.07 1.55 7.22 -2.39 -0.02 1.53 16 30 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.49 6.64 -2.38 -0.02 0.47 16 33 H 0.08 0.57 8.07 -2.39 -0.02 0.56 16 34 H 0.41 4.01 6.55 -92.71 -0.61 3.40 16 35 H 0.06 1.39 6.03 -2.39 -0.01 1.38 16 36 H 0.08 1.23 6.79 -2.38 -0.02 1.22 16 37 H 0.08 1.08 6.99 -2.39 -0.02 1.06 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.06 1.96 6.31 -2.39 -0.02 1.94 16 40 H 0.41 8.42 7.43 -92.71 -0.69 7.74 16 41 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 42 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 43 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.11 1.48 7.08 -2.39 -0.02 1.47 16 45 H 0.11 1.13 5.88 -2.39 -0.01 1.11 16 46 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 48 H 0.10 0.72 7.35 -2.39 -0.02 0.71 16 Total: -1.00 -83.28 396.65 2.16 -81.12 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.31 Total: 26.45 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 5.71 Total: -6.75 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -4.02 Total: -91.52 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -0.09 Total: -45.19 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.94 kcal Total: -83.28 2.16 -81.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499613910.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.460 kcal (2) G-P(sol) polarization free energy of solvation -83.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds