Wall clock time and date at job start Sat Apr 11 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47258 * 2 1 4 4 C 1.50706 * 119.99862 * 268.09510 * 3 2 1 5 5 C 1.32994 * 120.00665 * 88.09555 * 3 2 1 6 6 C 1.47105 * 119.99410 * 352.31834 * 5 3 2 7 7 O 1.21617 * 120.00163 * 357.18109 * 6 5 3 8 8 N 1.34774 * 119.99777 * 177.18276 * 6 5 3 9 9 C 1.46504 * 119.99759 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47048 * 185.05393 * 9 8 6 11 11 H 1.09000 * 109.87424 * 307.10962 * 10 9 8 12 12 C 1.54322 * 109.88328 * 68.12183 * 10 9 8 13 13 C 1.55399 * 102.82625 * 141.51726 * 12 10 9 14 14 C 1.54914 * 101.67002 * 324.66391 * 13 12 10 15 15 N 1.47022 * 109.88433 * 186.09500 * 10 9 8 16 16 C 1.34776 * 125.65015 * 61.67350 * 15 10 9 17 17 O 1.21282 * 120.00232 * 5.08271 * 16 15 10 18 18 C 1.50699 * 120.00239 * 185.08357 * 16 15 10 19 19 S 1.80992 * 109.47449 * 180.02562 * 18 16 15 20 20 C 1.76201 * 100.00177 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00061 * 0.02562 * 20 19 18 22 22 C 1.38800 * 120.00110 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00133 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99939 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47154 * 90.00102 * 24 22 20 26 26 H 1.48504 * 109.47161 * 210.00132 * 24 22 20 27 27 H 1.48502 * 109.46885 * 329.99874 * 24 22 20 28 28 H 1.08991 * 109.47175 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46642 * 300.00341 * 1 2 3 30 30 H 1.09002 * 109.47138 * 60.00002 * 1 2 3 31 31 H 1.08998 * 109.47088 * 240.00188 * 2 1 3 32 32 H 1.09002 * 109.47138 * 119.99998 * 2 1 3 33 33 H 1.08996 * 109.47577 * 269.99805 * 4 3 2 34 34 H 1.09004 * 109.47341 * 30.00378 * 4 3 2 35 35 H 1.09010 * 109.47074 * 149.99845 * 4 3 2 36 36 H 1.07996 * 120.00538 * 172.30823 * 5 3 2 37 37 H 0.96993 * 120.00208 * 0.02562 * 8 6 5 38 38 H 1.09001 * 109.46779 * 65.05978 * 9 8 6 39 39 H 1.08998 * 109.47544 * 305.05877 * 9 8 6 40 40 H 1.08992 * 110.72448 * 259.97318 * 12 10 9 41 41 H 1.09004 * 110.71739 * 23.24857 * 12 10 9 42 42 H 1.09000 * 111.03624 * 206.53031 * 13 12 10 43 43 H 1.08997 * 110.89236 * 82.73502 * 13 12 10 44 44 H 1.09003 * 110.36519 * 278.09000 * 14 13 12 45 45 H 1.08996 * 110.36499 * 155.76195 * 14 13 12 46 46 H 1.08996 * 109.47080 * 300.00599 * 18 16 15 47 47 H 1.09005 * 109.46944 * 59.99864 * 18 16 15 48 48 H 0.97007 * 120.00460 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3245 2.1167 -1.3044 5 6 2.2180 2.0606 1.1510 6 6 1.7759 1.4473 2.4129 7 8 1.1949 0.3790 2.3991 8 7 2.0148 2.0693 3.5845 9 6 1.5740 1.4588 4.8411 10 6 1.8529 2.4184 5.9997 11 1 2.8978 2.7282 5.9809 12 6 0.9368 3.6553 5.8889 13 6 0.5629 3.9415 7.3699 14 6 0.4739 2.5090 7.9530 15 7 1.5496 1.7597 7.2787 16 6 2.1552 0.6543 7.7560 17 8 3.0940 0.1714 7.1589 18 6 1.6660 0.0182 9.0315 19 16 2.6758 -1.4363 9.4065 20 6 1.9071 -1.9655 10.9010 21 1 1.0694 -1.4142 11.3020 22 6 2.3774 -3.0914 11.5625 23 7 1.8029 -3.4870 12.6786 24 14 3.8259 -4.0454 10.8685 25 1 5.0903 -3.4973 11.4218 26 1 3.7011 -5.4769 11.2433 27 1 3.8377 -3.9203 9.3888 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3632 1.9422 -1.5848 34 1 1.6677 1.7242 -2.0808 35 1 2.1536 3.1874 -1.1913 36 1 2.6934 3.0303 1.1594 37 1 2.4778 2.9215 3.5955 38 1 2.1165 0.5272 5.0024 39 1 0.5049 1.2524 4.7896 40 1 1.4763 4.4973 5.4553 41 1 0.0461 3.4244 5.3044 42 1 -0.3977 4.4519 7.4393 43 1 1.3457 4.5166 7.8643 44 1 -0.4962 2.0668 7.7262 45 1 0.6414 2.5268 9.0298 46 1 1.7448 0.7353 9.8486 47 1 0.6252 -0.2827 8.9115 48 1 2.1314 -4.2742 13.1407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499892944.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:35 Heat of formation + Delta-G solvation = -61.481989 kcal Electronic energy + Delta-G solvation = -27028.435171 eV Core-core repulsion = 23209.726629 eV Total energy + Delta-G solvation = -3818.708541 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.45364 -39.73955 -37.47408 -36.35634 -34.71012 -32.43735 -31.95767 -31.32479 -30.44091 -28.90476 -28.18827 -25.64311 -25.54172 -23.83555 -22.89309 -21.57258 -21.05781 -19.55877 -18.62266 -17.69908 -17.19156 -16.97053 -16.53840 -15.61136 -15.30765 -15.17514 -14.99692 -14.85354 -14.52888 -14.29885 -14.02685 -13.92250 -13.66322 -13.30224 -13.10988 -13.04274 -12.95821 -12.80788 -12.63714 -12.55149 -12.39324 -12.15982 -11.83542 -11.54019 -11.29453 -11.27359 -11.23816 -11.06229 -10.99781 -10.93230 -10.60855 -9.85520 -9.66626 -9.56684 -9.41659 -9.01523 -8.99762 -8.68049 -8.49497 -6.91698 -6.28381 -4.00198 1.12602 2.54988 2.87211 3.01795 3.15951 3.32968 3.35918 3.52058 3.61758 4.17550 4.26322 4.34118 4.45790 4.47636 4.53681 4.71082 4.83607 4.90740 5.00553 5.06466 5.10706 5.10777 5.12914 5.18582 5.20631 5.37808 5.40379 5.42319 5.47240 5.48073 5.50418 5.57056 5.72280 5.75380 5.81546 5.84768 5.94461 5.98076 6.00954 6.12674 6.16350 6.30413 6.38696 6.43908 7.38573 7.51102 7.94582 8.16095 8.38621 8.41954 9.17817 10.80751 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.002454 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.324028 B =11405.744764 C =12932.761235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.105 4.105 3 C -0.026 4.026 4 C -0.127 4.127 5 C -0.235 4.235 6 C 0.542 3.458 7 O -0.531 6.531 8 N -0.723 5.723 9 C 0.110 3.890 10 C 0.130 3.870 11 H 0.080 0.920 12 C -0.128 4.128 13 C -0.132 4.132 14 C 0.099 3.901 15 N -0.619 5.619 16 C 0.548 3.452 17 O -0.512 6.512 18 C -0.118 4.118 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.125 0.875 37 H 0.398 0.602 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.855 19.696 -23.595 30.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.142 4.142 3 C -0.028 4.028 4 C -0.184 4.184 5 C -0.256 4.256 6 C 0.332 3.668 7 O -0.410 6.410 8 N -0.375 5.375 9 C -0.015 4.015 10 C 0.025 3.975 11 H 0.098 0.902 12 C -0.166 4.166 13 C -0.170 4.170 14 C -0.024 4.024 15 N -0.357 5.357 16 C 0.336 3.664 17 O -0.386 6.386 18 C -0.268 4.268 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.142 0.858 37 H 0.231 0.769 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.114 0.886 47 H 0.116 0.884 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.851 17.981 -24.257 30.251 hybrid contribution -0.274 0.565 0.820 1.033 sum -2.124 18.546 -23.437 29.963 Atomic orbital electron populations 1.21537 0.94138 1.01840 1.01316 1.20990 0.97199 0.92422 1.03561 1.22600 0.90092 0.95708 0.94363 1.21008 1.02581 1.00269 0.94524 1.22321 1.08631 1.02510 0.92121 1.18548 0.79579 0.84702 0.83965 1.90768 1.41701 1.21441 1.87128 1.45741 1.60623 1.25134 1.06003 1.21711 1.00766 0.97344 0.81686 1.21613 1.00005 0.91980 0.83872 0.90204 1.22798 0.99782 0.96574 0.97487 1.22818 1.02757 0.96177 0.95230 1.22362 0.90880 0.91096 0.98106 1.48457 1.39105 1.28199 1.19911 1.20051 0.81869 0.78322 0.86136 1.90716 1.26830 1.61411 1.59635 1.23265 1.04685 1.02276 0.96597 1.84812 1.45144 1.28587 1.32968 1.22299 1.20722 1.16317 1.07477 0.89373 1.24706 0.96625 0.95988 0.93976 1.69933 1.40714 1.25032 1.15967 0.86743 0.82887 0.79813 0.82469 1.19218 1.19919 1.15887 0.92638 0.91666 0.93932 0.92208 0.87925 0.90422 0.90861 0.91135 0.85760 0.76858 0.90016 0.91082 0.89973 0.90189 0.89649 0.90392 0.91087 0.89928 0.88577 0.88414 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.38 37.16 0.35 -0.96 16 2 C -0.10 -1.05 5.33 -27.88 -0.15 -1.20 16 3 C -0.03 -0.22 5.36 -101.17 -0.54 -0.76 16 4 C -0.13 -0.67 10.03 36.01 0.36 -0.31 16 5 C -0.23 -2.03 9.62 -37.80 -0.36 -2.39 16 6 C 0.54 6.34 7.64 -12.66 -0.10 6.25 16 7 O -0.53 -8.07 11.30 5.26 0.06 -8.01 16 8 N -0.72 -7.22 5.38 -61.49 -0.33 -7.55 16 9 C 0.11 1.37 5.09 -4.04 -0.02 1.35 16 10 C 0.13 1.40 2.87 -66.95 -0.19 1.20 16 11 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 12 C -0.13 -0.89 6.29 -24.77 -0.16 -1.05 16 13 C -0.13 -0.90 7.09 -24.45 -0.17 -1.07 16 14 C 0.10 0.96 6.65 -2.53 -0.02 0.94 16 15 N -0.62 -8.27 3.06 -163.01 -0.50 -8.77 16 16 C 0.55 10.00 7.58 -10.99 -0.08 9.92 16 17 O -0.51 -11.19 15.04 5.56 0.08 -11.11 16 18 C -0.12 -2.33 5.25 36.01 0.19 -2.14 16 19 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 20 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 21 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 22 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 23 N -0.88 -26.68 13.97 55.49 0.78 -25.90 16 24 Si 0.86 22.04 27.74 -169.99 -4.72 17.32 16 25 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.23 -6.07 6.74 56.52 0.38 -5.69 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.78 6.58 -51.93 -0.34 0.44 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 32 H 0.10 1.32 5.79 -51.93 -0.30 1.02 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.35 8.12 -51.93 -0.42 -0.08 16 35 H 0.07 0.30 8.07 -51.92 -0.42 -0.12 16 36 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.40 2.70 8.42 -40.82 -0.34 2.35 16 38 H 0.08 1.38 6.87 -51.93 -0.36 1.02 16 39 H 0.07 0.94 7.99 -51.93 -0.42 0.52 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.55 7.75 -51.93 -0.40 0.15 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.80 7.51 -51.93 -0.39 0.41 16 46 H 0.10 1.75 7.76 -51.92 -0.40 1.35 16 47 H 0.10 1.83 8.14 -51.91 -0.42 1.40 16 48 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 400.36 15.07 6.03 6.03 Total: -1.00 -35.91 400.36 -9.29 -45.20 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.02 Total: 0.68 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -0.68 Total: -2.26 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -0.06 Total: -42.23 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.14 Total: -19.12 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.72 Total: 17.32 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.91 -9.29 -45.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499892944.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.282 kcal (2) G-P(sol) polarization free energy of solvation -35.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds