Wall clock time and date at job start Sat Apr 11 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47258 * 2 1 4 4 C 1.50706 * 119.99862 * 268.09510 * 3 2 1 5 5 C 1.32994 * 120.00665 * 88.09555 * 3 2 1 6 6 C 1.47105 * 119.99410 * 352.31834 * 5 3 2 7 7 O 1.21617 * 120.00163 * 357.18109 * 6 5 3 8 8 N 1.34774 * 119.99777 * 177.18276 * 6 5 3 9 9 C 1.46504 * 119.99759 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47048 * 185.05393 * 9 8 6 11 11 H 1.09000 * 109.87424 * 307.10962 * 10 9 8 12 12 C 1.54322 * 109.88328 * 68.12183 * 10 9 8 13 13 C 1.55399 * 102.82625 * 141.51726 * 12 10 9 14 14 C 1.54914 * 101.67002 * 324.66391 * 13 12 10 15 15 N 1.47022 * 109.88433 * 186.09500 * 10 9 8 16 16 C 1.34776 * 125.65015 * 61.67350 * 15 10 9 17 17 O 1.21282 * 120.00232 * 5.08271 * 16 15 10 18 18 C 1.50699 * 120.00239 * 185.08357 * 16 15 10 19 19 S 1.80992 * 109.47449 * 180.02562 * 18 16 15 20 20 C 1.76201 * 100.00177 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00061 * 0.02562 * 20 19 18 22 22 C 1.38800 * 120.00110 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00133 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99939 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47154 * 90.00102 * 24 22 20 26 26 H 1.48504 * 109.47161 * 210.00132 * 24 22 20 27 27 H 1.48502 * 109.46885 * 329.99874 * 24 22 20 28 28 H 1.08991 * 109.47175 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46642 * 300.00341 * 1 2 3 30 30 H 1.09002 * 109.47138 * 60.00002 * 1 2 3 31 31 H 1.08998 * 109.47088 * 240.00188 * 2 1 3 32 32 H 1.09002 * 109.47138 * 119.99998 * 2 1 3 33 33 H 1.08996 * 109.47577 * 269.99805 * 4 3 2 34 34 H 1.09004 * 109.47341 * 30.00378 * 4 3 2 35 35 H 1.09010 * 109.47074 * 149.99845 * 4 3 2 36 36 H 1.07996 * 120.00538 * 172.30823 * 5 3 2 37 37 H 0.96993 * 120.00208 * 0.02562 * 8 6 5 38 38 H 1.09001 * 109.46779 * 65.05978 * 9 8 6 39 39 H 1.08998 * 109.47544 * 305.05877 * 9 8 6 40 40 H 1.08992 * 110.72448 * 259.97318 * 12 10 9 41 41 H 1.09004 * 110.71739 * 23.24857 * 12 10 9 42 42 H 1.09000 * 111.03624 * 206.53031 * 13 12 10 43 43 H 1.08997 * 110.89236 * 82.73502 * 13 12 10 44 44 H 1.09003 * 110.36519 * 278.09000 * 14 13 12 45 45 H 1.08996 * 110.36499 * 155.76195 * 14 13 12 46 46 H 1.08996 * 109.47080 * 300.00599 * 18 16 15 47 47 H 1.09005 * 109.46944 * 59.99864 * 18 16 15 48 48 H 0.97007 * 120.00460 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3245 2.1167 -1.3044 5 6 2.2180 2.0606 1.1510 6 6 1.7759 1.4473 2.4129 7 8 1.1949 0.3790 2.3991 8 7 2.0148 2.0693 3.5845 9 6 1.5740 1.4588 4.8411 10 6 1.8529 2.4184 5.9997 11 1 2.8978 2.7282 5.9809 12 6 0.9368 3.6553 5.8889 13 6 0.5629 3.9415 7.3699 14 6 0.4739 2.5090 7.9530 15 7 1.5496 1.7597 7.2787 16 6 2.1552 0.6543 7.7560 17 8 3.0940 0.1714 7.1589 18 6 1.6660 0.0182 9.0315 19 16 2.6758 -1.4363 9.4065 20 6 1.9071 -1.9655 10.9010 21 1 1.0694 -1.4142 11.3020 22 6 2.3774 -3.0914 11.5625 23 7 1.8029 -3.4870 12.6786 24 14 3.8259 -4.0454 10.8685 25 1 5.0903 -3.4973 11.4218 26 1 3.7011 -5.4769 11.2433 27 1 3.8377 -3.9203 9.3888 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3632 1.9422 -1.5848 34 1 1.6677 1.7242 -2.0808 35 1 2.1536 3.1874 -1.1913 36 1 2.6934 3.0303 1.1594 37 1 2.4778 2.9215 3.5955 38 1 2.1165 0.5272 5.0024 39 1 0.5049 1.2524 4.7896 40 1 1.4763 4.4973 5.4553 41 1 0.0461 3.4244 5.3044 42 1 -0.3977 4.4519 7.4393 43 1 1.3457 4.5166 7.8643 44 1 -0.4962 2.0668 7.7262 45 1 0.6414 2.5268 9.0298 46 1 1.7448 0.7353 9.8486 47 1 0.6252 -0.2827 8.9115 48 1 2.1314 -4.2742 13.1407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499892944.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:34 Heat of formation + Delta-G solvation = -85.941314 kcal Electronic energy + Delta-G solvation = -27029.495807 eV Core-core repulsion = 23209.726629 eV Total energy + Delta-G solvation = -3819.769177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.49780 -40.74975 -38.66988 -37.10409 -35.66483 -34.70424 -33.07721 -32.10763 -31.30121 -30.19893 -28.84002 -27.88089 -26.40793 -24.62827 -23.90415 -22.37883 -21.90375 -20.68901 -19.83635 -19.31910 -18.33134 -17.85036 -17.67245 -17.15992 -16.58400 -16.48753 -16.22497 -15.92219 -15.81738 -15.45395 -15.10961 -14.92824 -14.80558 -14.37692 -14.15582 -14.06345 -13.79602 -13.74498 -13.65564 -13.57329 -13.37632 -13.11486 -13.06555 -12.94733 -12.84642 -12.70631 -12.14641 -12.04207 -12.00626 -11.89853 -11.74760 -11.65620 -11.20040 -11.06102 -10.57701 -10.57095 -10.23441 -9.85615 -9.80631 -9.04534 -8.54435 -6.25825 0.41737 0.91571 1.27977 1.39014 1.44896 1.49575 1.87046 2.22023 2.31529 2.41410 2.65894 2.83573 3.36339 3.51328 3.77122 3.79529 3.82475 3.86607 4.06407 4.12723 4.21976 4.23578 4.35332 4.38788 4.45677 4.52177 4.62331 4.65967 4.68964 4.72610 4.78834 4.85321 4.91993 4.98014 4.99466 5.09960 5.11111 5.18393 5.30287 5.34665 5.36431 5.47020 5.55482 5.68046 5.70880 6.08255 6.29016 6.60985 6.90598 6.99853 7.31955 8.57860 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.002454 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.324028 B =11405.744764 C =12932.761235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 C -0.024 4.024 4 C -0.123 4.123 5 C -0.241 4.241 6 C 0.531 3.469 7 O -0.576 6.576 8 N -0.709 5.709 9 C 0.122 3.878 10 C 0.128 3.872 11 H 0.080 0.920 12 C -0.115 4.115 13 C -0.119 4.119 14 C 0.083 3.917 15 N -0.611 5.611 16 C 0.547 3.453 17 O -0.558 6.558 18 C -0.102 4.102 19 S -0.178 6.178 20 C -0.527 4.527 21 H 0.064 0.936 22 C 0.047 3.953 23 N -0.914 5.914 24 Si 0.913 3.087 25 H -0.260 1.260 26 H -0.258 1.258 27 H -0.241 1.241 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.160 0.840 37 H 0.416 0.584 38 H 0.030 0.970 39 H 0.060 0.940 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.113 0.887 47 H 0.107 0.893 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.711 22.988 -25.771 34.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C -0.026 4.026 4 C -0.179 4.179 5 C -0.261 4.261 6 C 0.322 3.678 7 O -0.458 6.458 8 N -0.362 5.362 9 C -0.004 4.004 10 C 0.024 3.976 11 H 0.098 0.902 12 C -0.153 4.153 13 C -0.157 4.157 14 C -0.038 4.038 15 N -0.346 5.346 16 C 0.335 3.665 17 O -0.436 6.436 18 C -0.253 4.253 19 S 0.049 5.951 20 C -0.675 4.675 21 H 0.082 0.918 22 C -0.159 4.159 23 N -0.552 5.552 24 Si 0.735 3.265 25 H -0.185 1.185 26 H -0.182 1.182 27 H -0.165 1.165 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.178 0.822 37 H 0.253 0.747 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.133 0.867 41 H 0.103 0.897 42 H 0.131 0.869 43 H 0.104 0.896 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.131 0.869 47 H 0.126 0.874 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.730 21.353 -26.429 34.021 hybrid contribution -0.439 -0.374 1.447 1.558 sum -2.169 20.978 -24.982 32.694 Atomic orbital electron populations 1.21475 0.94319 1.01400 1.01168 1.20941 0.97151 0.93946 1.02546 1.22856 0.89006 0.94696 0.96004 1.21057 1.03414 1.00903 0.92521 1.22451 1.09420 1.03914 0.90345 1.19255 0.78978 0.84266 0.85291 1.90764 1.43742 1.23468 1.87809 1.45572 1.60273 1.25587 1.04748 1.21383 0.99210 0.96167 0.83663 1.21850 1.01313 0.92765 0.81624 0.90161 1.22819 0.99289 0.95119 0.98082 1.22832 1.04573 0.93918 0.94380 1.22757 0.89878 0.92882 0.98305 1.48437 1.38723 1.26563 1.20901 1.19704 0.81837 0.79550 0.85457 1.90695 1.29037 1.63211 1.60678 1.23212 1.03767 0.99889 0.98426 1.84756 1.46781 1.32324 1.31256 1.22417 1.20132 1.16256 1.08692 0.91827 1.25532 0.99080 0.96944 0.94316 1.70003 1.42202 1.25906 1.17090 0.85892 0.79960 0.79292 0.81383 1.18474 1.18175 1.16500 0.93341 0.93976 0.91661 0.90582 0.91524 0.89209 0.90102 0.89365 0.82219 0.74652 0.95133 0.92177 0.86703 0.89711 0.86885 0.89645 0.90239 0.89736 0.86861 0.87443 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.38 71.98 0.68 -1.88 16 2 C -0.11 -2.18 5.33 29.85 0.16 -2.02 16 3 C -0.02 -0.36 5.36 -17.61 -0.09 -0.45 16 4 C -0.12 -0.88 10.03 71.24 0.71 -0.17 16 5 C -0.24 -3.74 9.62 23.43 0.23 -3.51 16 6 C 0.53 12.49 7.64 86.57 0.66 13.15 16 7 O -0.58 -18.62 11.30 -4.08 -0.05 -18.67 16 8 N -0.71 -13.76 5.38 -466.70 -2.51 -16.27 16 9 C 0.12 3.11 5.09 86.38 0.44 3.55 16 10 C 0.13 2.59 2.87 45.34 0.13 2.72 16 11 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 12 C -0.12 -1.17 6.29 31.87 0.20 -0.97 16 13 C -0.12 -1.14 7.09 32.07 0.23 -0.91 16 14 C 0.08 1.44 6.65 86.86 0.58 2.02 16 15 N -0.61 -15.88 3.06 -788.04 -2.42 -18.30 16 16 C 0.55 20.28 7.58 87.66 0.66 20.95 16 17 O -0.56 -25.33 15.04 -3.03 -0.05 -25.37 16 18 C -0.10 -4.08 5.25 71.24 0.37 -3.71 16 19 S -0.18 -9.34 18.55 -56.49 -1.05 -10.39 16 20 C -0.53 -31.35 10.04 67.95 0.68 -30.67 16 21 H 0.06 3.96 8.03 -2.91 -0.02 3.94 16 22 C 0.05 2.81 5.50 84.86 0.47 3.27 16 23 N -0.91 -56.29 13.97 21.65 0.30 -55.98 16 24 Si 0.91 46.12 27.74 68.60 1.90 48.02 16 25 H -0.26 -12.74 7.11 99.48 0.71 -12.04 16 26 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 27 H -0.24 -12.33 6.74 99.48 0.67 -11.66 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 29 H 0.04 1.04 6.58 -2.38 -0.02 1.03 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.22 8.11 -2.39 -0.02 1.20 16 32 H 0.07 1.85 5.79 -2.39 -0.01 1.84 16 33 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.08 0.49 8.12 -2.38 -0.02 0.47 16 35 H 0.09 0.37 8.07 -2.38 -0.02 0.35 16 36 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 37 H 0.42 4.74 8.42 -92.71 -0.78 3.96 16 38 H 0.03 1.11 6.87 -2.39 -0.02 1.09 16 39 H 0.06 1.65 7.99 -2.39 -0.02 1.63 16 40 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.08 0.86 7.75 -2.39 -0.02 0.84 16 42 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.08 1.46 7.51 -2.39 -0.02 1.44 16 46 H 0.11 4.11 7.76 -2.40 -0.02 4.09 16 47 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 48 H 0.28 15.78 8.31 -92.70 -0.77 15.01 16 Total: -1.00 -83.81 400.36 2.38 -81.43 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.13 Total: 14.17 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 6.10 Total: 1.37 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -4.62 Total: -90.55 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.09 Total: -44.04 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.90 Total: 48.02 kcal Atomic # 16 Polarization: -9.34 SS G_CDS: -1.05 Total: -10.39 kcal Total: -83.81 2.38 -81.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499892944.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.512 kcal (2) G-P(sol) polarization free energy of solvation -83.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds