Wall clock time and date at job start Sat Apr 11 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47052 * 2 1 4 4 C 1.32990 * 120.00062 * 94.99539 * 3 2 1 5 5 C 1.47104 * 120.00059 * 172.05578 * 4 3 2 6 6 O 1.21609 * 119.99663 * 353.62207 * 5 4 3 7 7 N 1.34778 * 120.00081 * 173.89882 * 5 4 3 8 8 C 1.47064 * 136.05497 * 359.35526 * 7 5 4 9 9 C 1.53244 * 88.08094 * 207.20231 * 8 7 5 10 10 C 1.47065 * 136.05646 * 179.72362 * 7 5 4 11 11 H 1.08999 * 113.46501 * 267.62318 * 10 7 5 12 12 C 1.53000 * 113.46781 * 38.00613 * 10 7 5 13 13 N 1.46495 * 109.47186 * 285.49557 * 12 10 7 14 14 C 1.34777 * 119.99993 * 180.02562 * 13 12 10 15 15 O 1.21284 * 120.00057 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99954 * 179.97438 * 14 13 12 17 17 S 1.80994 * 109.46916 * 179.97438 * 16 14 13 18 18 C 1.76197 * 99.99970 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99884 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00175 * 180.02562 * 18 17 16 21 21 N 1.31638 * 120.00107 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00111 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47182 * 89.99946 * 22 20 18 24 24 H 1.48498 * 109.47334 * 209.99993 * 22 20 18 25 25 H 1.48504 * 109.47073 * 330.00429 * 22 20 18 26 26 C 1.50694 * 119.99893 * 274.99926 * 3 2 1 27 27 C 1.53006 * 109.47267 * 272.75988 * 26 3 2 28 28 H 1.08998 * 109.47551 * 300.00153 * 1 2 3 29 29 H 1.09005 * 109.47104 * 60.00396 * 1 2 3 30 30 H 1.09005 * 109.47168 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47551 * 239.99846 * 2 1 3 32 32 H 1.09005 * 109.47104 * 119.99604 * 2 1 3 33 33 H 1.08004 * 120.00230 * 352.05538 * 4 3 2 34 34 H 1.08995 * 113.47063 * 321.93302 * 8 7 5 35 35 H 1.09003 * 113.46861 * 92.37759 * 8 7 5 36 36 H 1.09005 * 114.32423 * 220.46940 * 9 8 7 37 37 H 1.08993 * 114.19760 * 87.73078 * 9 8 7 38 38 H 1.09003 * 109.46747 * 45.49465 * 12 10 7 39 39 H 1.08998 * 109.47184 * 165.49238 * 12 10 7 40 40 H 0.97005 * 120.00318 * 359.97438 * 13 12 10 41 41 H 1.08994 * 109.46839 * 299.99784 * 16 14 13 42 42 H 1.08999 * 109.46858 * 60.00115 * 16 14 13 43 43 H 0.96998 * 119.99692 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.47213 * 32.75513 * 26 3 2 45 45 H 1.09005 * 109.47335 * 152.75781 * 26 3 2 46 46 H 1.08997 * 109.46873 * 180.02562 * 27 26 3 47 47 H 1.09001 * 109.46616 * 299.99890 * 27 26 3 48 48 H 1.08993 * 109.46682 * 59.99642 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3485 2.0144 1.1473 5 6 3.0012 3.3327 1.1381 6 8 3.3565 3.8278 0.0857 7 7 3.2104 3.9892 2.2964 8 6 2.9331 3.7411 3.7192 9 6 2.8921 5.2594 3.9230 10 6 3.8105 5.2719 2.6931 11 1 4.8693 5.1974 2.9412 12 6 3.5102 6.4124 1.7184 13 7 4.3167 6.2446 0.5070 14 6 4.2179 7.1378 -0.4974 15 8 3.4610 8.0802 -0.3986 16 6 5.0481 6.9655 -1.7434 17 16 4.6927 8.3146 -2.8964 18 6 5.7662 7.8745 -4.2224 19 1 6.3825 6.9907 -4.1477 20 6 5.8207 8.6642 -5.3626 21 7 6.6224 8.3351 -6.3535 22 14 4.7553 10.1932 -5.4915 23 1 5.4965 11.3601 -4.9492 24 1 4.4155 10.4410 -6.9157 25 1 3.5071 9.9939 -4.7121 26 6 2.1762 2.1691 -1.3001 27 6 3.5553 1.8882 -1.9003 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.1261 1.5285 2.0860 34 1 1.9737 3.2549 3.8961 35 1 3.7558 3.2548 4.2434 36 1 3.3696 5.6022 4.8409 37 1 1.9126 5.7065 3.7539 38 1 2.4524 6.3968 1.4558 39 1 3.7539 7.3653 2.1881 40 1 4.9224 5.4910 0.4281 41 1 6.1057 6.9810 -1.4803 42 1 4.8044 6.0126 -2.2133 43 1 6.6601 8.8868 -7.1504 44 1 1.4037 1.8411 -1.9956 45 1 2.0704 3.2385 -1.1175 46 1 3.6595 2.4298 -2.8404 47 1 4.3279 2.2163 -1.2048 48 1 3.6611 0.8189 -2.0828 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505616892.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:42 Heat of formation + Delta-G solvation = -49.400017 kcal Electronic energy + Delta-G solvation = -27655.205022 eV Core-core repulsion = 23837.020394 eV Total energy + Delta-G solvation = -3818.184628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.68223 -40.40971 -39.46966 -37.12599 -35.60872 -34.70230 -32.85705 -32.08388 -31.39829 -29.99557 -28.71182 -27.85454 -25.62539 -24.24097 -24.05063 -23.09737 -21.76062 -20.38678 -19.89398 -19.00762 -18.25422 -17.73903 -17.53001 -17.12045 -16.99032 -16.48464 -16.10345 -15.96559 -15.66784 -15.43971 -15.04751 -14.92396 -14.72576 -14.57151 -14.45040 -13.99758 -13.79179 -13.50464 -13.46078 -13.38110 -13.24988 -13.04080 -12.95072 -12.93700 -12.71842 -12.60609 -12.38058 -12.14321 -11.93077 -11.83478 -11.71640 -11.61906 -11.19653 -10.97671 -10.59122 -10.38876 -10.08798 -10.06397 -9.53662 -9.03227 -8.54312 -6.25680 0.42798 0.95465 1.28750 1.44035 1.52631 1.58303 1.86951 2.22555 2.29961 2.38665 2.69660 2.83349 3.40056 3.61008 3.76149 3.77780 3.91127 4.03905 4.07388 4.16748 4.22015 4.26344 4.37806 4.40229 4.41126 4.42549 4.49831 4.58347 4.64637 4.71994 4.75029 4.77120 4.90648 4.97415 5.02924 5.03835 5.08962 5.30332 5.31799 5.34854 5.36601 5.44394 5.53856 5.67940 5.71731 6.07669 6.45689 6.83753 6.90125 7.18352 7.31863 8.58629 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011425 B = 0.003010 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.271911 B = 9300.968007 C =11139.061474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.021 4.021 4 C -0.227 4.227 5 C 0.554 3.446 6 O -0.557 6.557 7 N -0.652 5.652 8 C 0.104 3.896 9 C -0.129 4.129 10 C 0.117 3.883 11 H 0.117 0.883 12 C 0.120 3.880 13 N -0.695 5.695 14 C 0.537 3.463 15 O -0.570 6.570 16 C -0.106 4.106 17 S -0.169 6.169 18 C -0.531 4.531 19 H 0.057 0.943 20 C 0.046 3.954 21 N -0.917 5.917 22 Si 0.917 3.083 23 H -0.259 1.259 24 H -0.255 1.255 25 H -0.239 1.239 26 C -0.105 4.105 27 C -0.125 4.125 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.150 0.850 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.409 0.591 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.278 0.722 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.038 0.962 47 H 0.047 0.953 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.554 -19.430 27.217 35.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.023 4.023 4 C -0.247 4.247 5 C 0.348 3.652 6 O -0.438 6.438 7 N -0.388 5.388 8 C -0.018 4.018 9 C -0.167 4.167 10 C 0.013 3.987 11 H 0.135 0.865 12 C -0.004 4.004 13 N -0.347 5.347 14 C 0.322 3.678 15 O -0.449 6.449 16 C -0.257 4.257 17 S 0.058 5.942 18 C -0.678 4.678 19 H 0.075 0.925 20 C -0.160 4.160 21 N -0.555 5.555 22 Si 0.738 3.262 23 H -0.183 1.183 24 H -0.179 1.179 25 H -0.163 1.163 26 C -0.142 4.142 27 C -0.182 4.182 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.168 0.832 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.143 0.857 37 H 0.111 0.889 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.246 0.754 41 H 0.126 0.874 42 H 0.115 0.885 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.576 -17.734 26.484 33.911 hybrid contribution 1.215 -0.736 -1.154 1.831 sum -10.361 -18.471 25.330 33.017 Atomic orbital electron populations 1.21720 0.93672 1.02883 1.02017 1.20792 0.96984 0.90831 1.04318 1.22700 0.89692 0.95791 0.94111 1.22358 1.07327 0.95355 0.99684 1.18661 0.79427 0.85274 0.81804 1.90791 1.53096 1.69298 1.30573 1.49917 1.60234 1.21556 1.07049 1.23132 1.03475 0.97247 0.77909 1.23394 1.00136 0.96151 0.97033 1.23225 1.00582 0.81855 0.93032 0.86500 1.21646 0.94722 0.99557 0.84487 1.45629 1.44779 1.27642 1.16677 1.19818 0.81914 0.82012 0.84058 1.90649 1.40168 1.33086 1.81033 1.23184 1.03529 1.02690 0.96277 1.84556 1.58082 1.36010 1.15589 1.22446 1.27158 1.14682 1.03555 0.92464 1.25593 0.95961 1.00520 0.93898 1.70023 1.38017 1.40388 1.07080 0.85835 0.81119 0.79718 0.79485 1.18302 1.17948 1.16344 1.20902 0.97822 1.01012 0.94471 1.21437 0.96348 1.00740 0.99667 0.92282 0.93394 0.90590 0.90034 0.88946 0.83239 0.88876 0.87246 0.85668 0.88879 0.93735 0.89955 0.75446 0.87438 0.88483 0.91254 0.91610 0.90975 0.94293 0.93426 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.89 71.98 0.71 -0.80 16 2 C -0.09 -1.06 6.11 29.85 0.18 -0.88 16 3 C -0.02 -0.38 4.61 -17.62 -0.08 -0.46 16 4 C -0.23 -3.83 9.43 23.43 0.22 -3.61 16 5 C 0.55 12.33 7.76 86.57 0.67 13.00 16 6 O -0.56 -16.79 9.57 -4.06 -0.04 -16.83 16 7 N -0.65 -10.17 3.57 -838.50 -2.99 -13.17 16 8 C 0.10 0.59 8.32 83.10 0.69 1.28 16 9 C -0.13 -0.77 8.02 30.84 0.25 -0.52 16 10 C 0.12 1.60 4.08 41.79 0.17 1.77 16 11 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 12 C 0.12 2.85 5.36 86.38 0.46 3.31 16 13 N -0.70 -21.23 4.16 -463.06 -1.93 -23.15 16 14 C 0.54 21.95 7.85 87.66 0.69 22.64 16 15 O -0.57 -27.30 15.86 -3.04 -0.05 -27.34 16 16 C -0.11 -4.73 6.16 71.24 0.44 -4.29 16 17 S -0.17 -9.32 18.55 -56.49 -1.05 -10.37 16 18 C -0.53 -33.04 10.04 67.95 0.68 -32.36 16 19 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 20 C 0.05 2.81 5.50 84.86 0.47 3.27 16 21 N -0.92 -58.08 13.97 21.65 0.30 -57.78 16 22 Si 0.92 47.07 27.74 68.60 1.90 48.97 16 23 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 25 H -0.24 -12.39 6.74 99.48 0.67 -11.72 16 26 C -0.11 -2.56 5.32 29.85 0.16 -2.40 16 27 C -0.12 -3.20 9.45 71.98 0.68 -2.52 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.74 8.04 -2.38 -0.02 0.72 16 33 H 0.15 1.55 7.99 -2.91 -0.02 1.53 16 34 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.13 0.06 8.14 -2.38 -0.02 0.04 16 37 H 0.09 0.73 8.12 -2.39 -0.02 0.71 16 38 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.41 11.53 7.36 -92.70 -0.68 10.85 16 41 H 0.11 4.43 8.14 -2.40 -0.02 4.41 16 42 H 0.10 4.34 8.14 -2.40 -0.02 4.32 16 43 H 0.28 16.17 8.31 -92.71 -0.77 15.40 16 44 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 45 H 0.07 2.28 5.57 -2.38 -0.01 2.26 16 46 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.05 1.34 6.91 -2.39 -0.02 1.33 16 48 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -83.72 404.72 2.77 -80.96 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.22 Total: 21.26 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 6.39 Total: -2.55 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -4.62 Total: -94.10 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.09 Total: -44.17 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.90 Total: 48.97 kcal Atomic # 16 Polarization: -9.32 SS G_CDS: -1.05 Total: -10.37 kcal Total: -83.72 2.77 -80.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505616892.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.556 kcal (2) G-P(sol) polarization free energy of solvation -83.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds