Wall clock time and date at job start Sat Apr 11 2020 06:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 119.99773 * 2 1 4 4 C 1.53000 * 109.47116 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.46973 * 239.99996 * 3 2 1 6 6 C 1.53005 * 109.47002 * 119.99859 * 3 2 1 7 7 C 1.50692 * 109.47132 * 180.02562 * 6 3 2 8 8 O 1.21287 * 120.00047 * 359.97438 * 7 6 3 9 9 N 1.34774 * 120.00150 * 180.02562 * 7 6 3 10 10 C 1.46497 * 120.00202 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47461 * 174.51904 * 10 9 7 12 12 N 1.46507 * 115.54616 * 324.38868 * 11 10 9 13 13 C 1.34778 * 119.99984 * 294.47958 * 12 11 10 14 14 O 1.21278 * 119.99824 * 355.45990 * 13 12 11 15 15 C 1.50702 * 120.00106 * 175.46218 * 13 12 11 16 16 S 1.80994 * 109.47187 * 179.97438 * 15 13 12 17 17 C 1.76198 * 100.00030 * 179.97438 * 16 15 13 18 18 H 1.08009 * 120.00010 * 0.02562 * 17 16 15 19 19 C 1.38797 * 120.00330 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99944 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00418 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46752 * 60.00059 * 21 19 17 23 23 H 1.48493 * 109.47321 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47456 * 300.00428 * 21 19 17 25 25 C 1.52993 * 117.50102 * 110.05835 * 11 10 9 26 26 C 1.52999 * 117.50049 * 178.72135 * 11 10 9 27 27 H 1.07994 * 120.00267 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.99911 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99849 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46833 * 180.02562 * 4 3 2 31 31 H 1.08998 * 109.46983 * 300.00059 * 4 3 2 32 32 H 1.08998 * 109.46901 * 60.00015 * 4 3 2 33 33 H 1.08999 * 109.46755 * 300.00110 * 5 3 2 34 34 H 1.08998 * 109.47215 * 59.99887 * 5 3 2 35 35 H 1.09004 * 109.46739 * 180.02562 * 5 3 2 36 36 H 1.09003 * 109.46682 * 59.99744 * 6 3 2 37 37 H 1.09002 * 109.46992 * 299.99968 * 6 3 2 38 38 H 0.97002 * 119.99633 * 359.97438 * 9 7 6 39 39 H 1.09005 * 109.47361 * 54.51753 * 10 9 7 40 40 H 1.08997 * 109.47189 * 294.52023 * 10 9 7 41 41 H 0.97001 * 119.99849 * 114.75326 * 12 11 10 42 42 H 1.09008 * 109.46629 * 300.00004 * 15 13 12 43 43 H 1.08999 * 109.46815 * 59.99360 * 15 13 12 44 44 H 0.96995 * 120.00197 * 180.02562 * 20 19 17 45 45 H 1.09005 * 117.49674 * 215.00373 * 25 11 10 46 46 H 1.09001 * 117.50250 * 0.02562 * 25 11 10 47 47 H 1.08994 * 117.50200 * 359.97244 * 26 11 10 48 48 H 1.09002 * 117.49893 * 144.97409 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9431 1.3862 -1.2493 6 6 2.9431 1.3862 1.2493 7 6 3.6961 2.6915 1.2497 8 8 3.5445 3.4793 0.3400 9 7 4.5387 2.9832 2.2603 10 6 5.2711 4.2519 2.2603 11 6 6.0449 4.3941 3.5725 12 7 5.3804 3.8511 4.7599 13 6 4.2357 4.4064 5.2048 14 8 3.7996 5.4051 4.6728 15 6 3.4979 3.7863 6.3633 16 16 2.0118 4.7557 6.7206 17 6 1.3628 3.8332 8.0742 18 1 1.8832 2.9556 8.4286 19 6 0.1834 4.2349 8.6859 20 7 -0.4506 5.3047 8.2544 21 14 -0.5050 3.2565 10.1205 22 1 0.4849 3.2380 11.2274 23 1 -1.7629 3.8888 10.5927 24 1 -0.7838 1.8652 9.6826 25 6 7.5701 4.2923 3.5079 26 6 6.9029 5.6478 3.7544 27 1 -0.5400 0.9352 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.6142 3.4120 0.0002 31 1 0.4422 2.4104 -0.8891 32 1 0.4429 2.4100 0.8909 33 1 3.6514 0.5577 -1.2492 34 1 2.3165 1.3284 -2.1392 35 1 3.4884 2.3300 -1.2490 36 1 3.6514 0.5577 1.2493 37 1 2.3164 1.3285 2.1393 38 1 4.6601 2.3530 2.9876 39 1 4.5668 5.0781 2.1625 40 1 5.9691 4.2686 1.4233 41 1 5.7664 3.0943 5.2282 42 1 3.2136 2.7653 6.1083 43 1 4.1438 3.7750 7.2412 44 1 -1.2746 5.5856 8.6820 45 1 8.0791 3.8213 4.3488 46 1 8.0224 4.1245 2.5304 47 1 6.9165 6.3710 2.9392 48 1 6.9727 6.0687 4.7575 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506079093.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:48 Heat of formation + Delta-G solvation = -30.864996 kcal Electronic energy + Delta-G solvation = -27572.775894 eV Core-core repulsion = 23755.395005 eV Total energy + Delta-G solvation = -3817.380889 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.43883 -39.62411 -37.56681 -36.95808 -34.23147 -32.85464 -32.45952 -31.40732 -29.17245 -28.78894 -27.25041 -26.31094 -25.51571 -22.84659 -22.57918 -21.52505 -20.39352 -19.63954 -18.27914 -17.90263 -17.25115 -16.80891 -16.35364 -15.69301 -15.52089 -15.26839 -15.07987 -14.83601 -14.55597 -14.42536 -14.03599 -13.94684 -13.60704 -13.37200 -13.17316 -12.81476 -12.71164 -12.42832 -12.11826 -12.06447 -11.78072 -11.74261 -11.33478 -11.14438 -11.08205 -11.07524 -11.03172 -11.00430 -10.81108 -10.68069 -10.43471 -9.86129 -9.53107 -9.46703 -9.43774 -9.10213 -9.04460 -8.95191 -8.28258 -6.54061 -6.24700 -3.95961 2.17976 2.64948 2.80412 2.98822 3.14481 3.20768 3.24771 3.27297 3.51821 3.58402 4.17057 4.37802 4.54387 4.59078 4.66117 4.76205 4.86988 5.02894 5.08362 5.10487 5.17275 5.26762 5.34328 5.36894 5.44417 5.47662 5.58597 5.62299 5.72086 5.72847 5.77636 5.79836 5.85073 5.89885 5.95689 6.04318 6.05204 6.09551 6.25347 6.38475 6.50562 6.56560 6.66476 6.72542 7.46142 7.55356 7.58679 8.24688 8.31274 8.54117 9.20424 10.82565 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007948 B = 0.003470 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3521.850016 B = 8066.848822 C =10845.542628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C -0.018 4.018 4 C -0.158 4.158 5 C -0.148 4.148 6 C -0.130 4.130 7 C 0.517 3.483 8 O -0.532 6.532 9 N -0.722 5.722 10 C 0.154 3.846 11 C 0.091 3.909 12 N -0.712 5.712 13 C 0.534 3.466 14 O -0.500 6.500 15 C -0.154 4.154 16 S -0.056 6.056 17 C -0.538 4.538 18 H 0.072 0.928 19 C 0.075 3.925 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.274 1.274 25 C -0.171 4.171 26 C -0.161 4.161 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.399 0.601 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.400 0.600 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.269 0.731 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.955 -10.340 -14.073 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.167 4.167 3 C -0.018 4.018 4 C -0.215 4.215 5 C -0.205 4.205 6 C -0.170 4.170 7 C 0.304 3.696 8 O -0.410 6.410 9 N -0.374 5.374 10 C 0.029 3.971 11 C 0.002 3.998 12 N -0.368 5.368 13 C 0.320 3.680 14 O -0.372 6.372 15 C -0.304 4.304 16 S 0.171 5.829 17 C -0.686 4.686 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.744 3.256 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.208 4.208 26 C -0.200 4.200 27 H 0.124 0.876 28 H 0.112 0.888 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.233 0.767 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.235 0.765 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.118 0.882 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.920 -7.964 -15.599 21.764 hybrid contribution 0.290 -2.609 2.386 3.547 sum 13.210 -10.573 -13.213 21.468 Atomic orbital electron populations 1.24054 0.96227 1.02200 1.00481 1.22913 0.95951 0.97440 1.00364 1.19347 0.94926 0.93406 0.94152 1.22199 0.98630 0.99525 1.01136 1.22045 0.99175 1.03286 0.95961 1.21718 0.99298 0.95336 1.00647 1.20602 0.78815 0.88659 0.81503 1.90575 1.64106 1.50644 1.35668 1.45849 1.45205 1.20851 1.25503 1.21017 0.95282 0.87224 0.93548 1.20705 0.89537 1.02618 0.86898 1.45467 1.26058 1.36278 1.28969 1.20358 0.79718 0.83882 0.84025 1.90721 1.65715 1.23658 1.57141 1.23539 1.04121 1.04730 0.98047 1.85456 1.18660 1.36282 1.42515 1.22819 1.11915 1.15155 1.18751 0.91015 1.24981 0.95715 0.95273 0.97490 1.70003 1.16935 1.22936 1.40312 0.86238 0.78293 0.79762 0.81301 1.19943 1.20775 1.19917 1.23439 0.92417 1.01147 1.03835 1.23316 1.01415 0.91116 1.04128 0.87636 0.88765 0.87654 0.89477 0.92882 0.92804 0.93613 0.93055 0.89539 0.89058 0.88522 0.76659 0.89673 0.90923 0.76511 0.89306 0.89320 0.92077 0.88158 0.87686 0.87831 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.89 13.70 29.01 0.40 -1.49 16 2 C -0.15 -1.45 8.76 -36.03 -0.32 -1.77 16 3 C -0.02 -0.19 0.74 -155.66 -0.11 -0.31 16 4 C -0.16 -1.99 6.83 37.16 0.25 -1.74 16 5 C -0.15 -1.57 8.16 37.16 0.30 -1.26 16 6 C -0.13 -1.34 4.75 -27.88 -0.13 -1.47 16 7 C 0.52 6.54 7.24 -10.99 -0.08 6.46 16 8 O -0.53 -8.20 11.34 5.55 0.06 -8.14 16 9 N -0.72 -8.18 5.40 -60.30 -0.33 -8.51 16 10 C 0.15 1.84 5.42 -4.04 -0.02 1.82 16 11 C 0.09 0.96 1.97 -131.82 -0.26 0.70 16 12 N -0.71 -8.24 4.44 -47.61 -0.21 -8.45 16 13 C 0.53 9.15 7.70 -10.98 -0.08 9.06 16 14 O -0.50 -10.75 15.38 5.56 0.09 -10.66 16 15 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 16 S -0.06 -1.47 20.57 -107.50 -2.21 -3.68 16 17 C -0.54 -15.01 9.50 30.94 0.29 -14.72 16 18 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -25.88 13.22 55.49 0.73 -25.15 16 21 Si 0.92 21.09 29.55 -169.99 -5.02 16.07 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 25 C -0.17 -1.26 10.11 -26.70 -0.27 -1.53 16 26 C -0.16 -1.62 10.18 -26.69 -0.27 -1.89 16 27 H 0.11 1.08 5.69 -52.49 -0.30 0.78 16 28 H 0.09 0.79 8.06 -52.49 -0.42 0.37 16 29 H 0.11 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.09 1.30 5.51 -51.93 -0.29 1.01 16 31 H 0.05 0.61 7.50 -51.93 -0.39 0.22 16 32 H 0.05 0.70 7.50 -51.93 -0.39 0.31 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 1.08 5.51 -51.93 -0.29 0.80 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.40 3.79 7.78 -40.82 -0.32 3.48 16 39 H 0.09 1.33 7.90 -51.93 -0.41 0.92 16 40 H 0.07 0.76 7.91 -51.93 -0.41 0.35 16 41 H 0.40 3.36 8.83 -40.82 -0.36 3.00 16 42 H 0.09 1.53 8.14 -51.91 -0.42 1.10 16 43 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 44 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.10 0.64 8.06 -51.93 -0.42 0.22 16 47 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 405.64 15.07 6.11 6.11 Total: -1.00 -34.72 405.64 -8.72 -43.44 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.76 Total: 7.79 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -0.18 Total: -8.82 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.20 Total: -42.11 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.15 Total: -18.80 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.72 -8.72 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506079093.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.573 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds