Wall clock time and date at job start Sat Apr 11 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47589 * 2 1 4 4 C 1.53007 * 109.47153 * 119.99914 * 2 1 3 5 5 H 1.08997 * 115.54680 * 274.33154 * 4 2 1 6 6 C 1.53073 * 117.51648 * 128.60639 * 4 2 1 7 7 C 1.52998 * 59.98411 * 252.52557 * 6 4 2 8 8 H 1.08996 * 117.50072 * 107.50175 * 7 6 4 9 9 C 1.50706 * 117.49548 * 252.50153 * 7 6 4 10 10 O 1.21274 * 120.00042 * 68.46732 * 9 7 6 11 11 N 1.34777 * 119.99766 * 248.74267 * 9 7 6 12 12 C 1.47067 * 136.05761 * 359.63413 * 11 9 7 13 13 C 1.53757 * 87.89162 * 152.95826 * 12 11 9 14 14 N 1.46504 * 114.39371 * 272.67967 * 13 12 11 15 15 C 1.46495 * 120.00031 * 33.57717 * 14 13 12 16 16 C 1.34772 * 119.99419 * 213.58351 * 14 13 12 17 17 O 1.21282 * 120.00369 * 359.97438 * 16 14 13 18 18 C 1.50707 * 119.99875 * 180.02562 * 16 14 13 19 19 S 1.80993 * 109.47210 * 180.02562 * 18 16 14 20 20 C 1.76206 * 99.99995 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99881 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00113 * 179.97438 * 20 19 18 23 23 N 1.31631 * 120.00306 * 179.97438 * 22 20 19 24 24 Si 1.86809 * 119.99855 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47149 * 90.00078 * 24 22 20 26 26 H 1.48499 * 109.46962 * 209.99983 * 24 22 20 27 27 H 1.48493 * 109.47074 * 329.99807 * 24 22 20 28 28 C 1.47060 * 136.05953 * 179.97438 * 11 9 7 29 29 H 1.08996 * 109.47493 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46998 * 300.00046 * 1 2 3 31 31 H 1.08995 * 109.47289 * 60.00125 * 1 2 3 32 32 H 1.09000 * 109.47495 * 239.99387 * 2 1 3 33 33 H 1.08992 * 109.47178 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46749 * 299.99955 * 3 2 1 35 35 H 1.09000 * 109.47203 * 59.99208 * 3 2 1 36 36 H 1.08992 * 117.51419 * 145.04610 * 6 4 2 37 37 H 1.09001 * 117.49003 * 0.02562 * 6 4 2 38 38 H 1.09000 * 113.47067 * 267.69524 * 12 11 9 39 39 H 1.09009 * 113.47132 * 38.13010 * 12 11 9 40 40 H 1.08998 * 114.26786 * 139.78622 * 13 12 11 41 41 H 1.09003 * 109.46512 * 90.00577 * 15 14 13 42 42 H 1.09001 * 109.47096 * 210.00139 * 15 14 13 43 43 H 1.08998 * 109.47557 * 330.00173 * 15 14 13 44 44 H 1.09007 * 109.46410 * 299.99577 * 18 16 14 45 45 H 1.08996 * 109.47064 * 59.99657 * 18 16 14 46 46 H 0.96994 * 120.00122 * 179.97438 * 23 22 20 47 47 H 1.09004 * 113.46777 * 321.86864 * 28 11 9 48 48 H 1.09001 * 113.46844 * 92.30643 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 2.1267 -0.1060 2.1448 6 6 3.0744 -1.8322 1.0518 7 6 1.6357 -2.1852 1.4344 8 1 1.0064 -2.6345 0.6662 9 6 1.3878 -2.6661 2.8410 10 8 1.5144 -1.9020 3.7742 11 7 1.0308 -3.9468 3.0622 12 6 0.7818 -5.1351 2.2323 13 6 1.1827 -5.9944 3.4428 14 7 2.6194 -6.2623 3.5453 15 6 3.5859 -5.2547 3.1020 16 6 3.0517 -7.4359 4.0474 17 8 2.2515 -8.2700 4.4148 18 6 4.5296 -7.7114 4.1535 19 16 4.7872 -9.3577 4.8600 20 6 6.5483 -9.4147 4.8688 21 1 7.1177 -8.5738 4.5012 22 6 7.2039 -10.5403 5.3482 23 7 8.5195 -10.5831 5.3543 24 14 6.2191 -11.9945 5.9847 25 1 5.9460 -12.9343 4.8679 26 1 6.9944 -12.6930 7.0411 27 1 4.9339 -11.5121 6.5511 28 6 0.7130 -4.7693 4.2391 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.8415 -1.9478 1.8173 37 1 3.3916 -2.0487 0.0317 38 1 -0.2628 -5.2521 1.9439 39 1 1.4654 -5.2261 1.3881 40 1 0.5674 -6.8828 3.5849 41 1 3.8342 -4.5979 3.9357 42 1 4.4901 -5.7496 2.7476 43 1 3.1527 -4.6668 2.2928 44 1 4.9793 -7.6677 3.1615 45 1 4.9934 -6.9631 4.7961 46 1 8.9775 -11.3696 5.6896 47 1 1.3379 -4.5486 5.1045 48 1 -0.3498 -4.7897 4.4803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506258961.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:57 Heat of formation + Delta-G solvation = -6.119206 kcal Electronic energy + Delta-G solvation = -27216.086254 eV Core-core repulsion = 23399.778424 eV Total energy + Delta-G solvation = -3816.307831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27662 -39.72196 -38.54021 -37.29243 -34.63682 -33.72395 -32.46035 -30.56084 -28.90170 -27.59614 -26.92235 -26.51179 -25.64597 -24.39458 -23.26233 -22.00083 -20.28799 -19.74509 -18.62443 -17.86885 -17.52355 -17.16800 -16.46031 -15.93573 -15.66521 -15.45270 -15.35634 -14.97203 -14.82047 -14.10435 -13.92554 -13.63585 -13.56416 -13.55614 -13.25949 -12.94383 -12.84343 -12.81914 -12.67199 -12.58440 -12.30141 -12.18320 -12.07762 -11.71693 -11.58325 -11.31894 -11.28349 -11.09649 -11.02767 -10.66756 -10.64597 -10.47762 -10.02894 -9.89277 -9.64223 -9.04859 -9.02605 -8.74658 -8.53109 -6.95301 -6.30901 -4.03280 2.16453 2.44208 2.56987 2.76691 3.08516 3.31177 3.41372 3.48454 3.54717 3.89543 4.04935 4.27234 4.30788 4.33158 4.47154 4.56653 4.62604 4.65488 4.84948 4.88272 4.90693 4.92985 5.01823 5.03021 5.08063 5.15931 5.19528 5.25453 5.26943 5.33122 5.39622 5.41497 5.44765 5.47874 5.58633 5.63043 5.66245 5.68766 5.72832 5.74122 5.85831 5.96324 6.01168 6.41794 7.27563 7.39595 7.87072 7.92000 8.29592 8.39552 9.15038 10.78253 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.002137 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.618342 B =13096.487170 C =13899.625565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 C -0.145 4.145 4 C -0.111 4.111 5 H 0.118 0.882 6 C -0.148 4.148 7 C -0.185 4.185 8 H 0.121 0.879 9 C 0.572 3.428 10 O -0.538 6.538 11 N -0.643 5.643 12 C 0.089 3.911 13 C 0.113 3.887 14 N -0.601 5.601 15 C 0.080 3.920 16 C 0.537 3.463 17 O -0.514 6.514 18 C -0.121 4.121 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.879 5.879 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.089 3.911 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.132 0.868 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.271 0.729 47 H 0.083 0.917 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.842 20.308 -13.216 29.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.202 4.202 4 C -0.130 4.130 5 H 0.136 0.864 6 C -0.185 4.185 7 C -0.206 4.206 8 H 0.139 0.861 9 C 0.362 3.638 10 O -0.415 6.415 11 N -0.379 5.379 12 C -0.035 4.035 13 C 0.007 3.993 14 N -0.336 5.336 15 C -0.063 4.063 16 C 0.325 3.675 17 O -0.388 6.388 18 C -0.271 4.271 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.035 4.035 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.150 0.850 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.101 0.899 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.695 19.612 -12.157 29.078 hybrid contribution 0.758 0.306 -0.190 0.840 sum -16.937 19.919 -12.347 28.914 Atomic orbital electron populations 1.21821 0.94833 1.01822 1.01881 1.20751 0.95838 0.96266 0.95676 1.21803 1.01281 0.95225 1.01923 1.22514 1.00961 0.89075 1.00405 0.86448 1.23142 0.90351 1.01800 1.03198 1.22189 1.01688 1.01373 0.95359 0.86114 1.19210 0.75869 0.78894 0.89779 1.90718 1.52445 1.53288 1.45017 1.49636 1.68129 1.08510 1.11619 1.23544 1.02163 0.81521 0.96309 1.22192 0.83730 0.98008 0.95403 1.47434 1.04758 1.17005 1.64402 1.21830 0.92630 0.91830 1.00055 1.20358 0.90966 0.80244 0.75895 1.90696 1.56438 1.44878 1.46761 1.23312 0.93860 1.04462 1.05460 1.84778 1.09961 1.14879 1.81911 1.22296 0.88243 1.07067 1.49283 0.89376 1.24717 0.94556 0.97985 0.94066 1.69935 1.06957 1.29961 1.44738 0.86732 0.82043 0.83065 0.79990 1.19199 1.19931 1.15921 1.23529 1.01508 0.86898 0.91521 0.92767 0.92450 0.92569 0.90953 0.92367 0.92512 0.92450 0.88047 0.87609 0.88198 0.89556 0.85047 0.92740 0.90385 0.91131 0.88393 0.88408 0.91916 0.89851 0.88609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.03 37.16 0.34 -0.51 16 2 C -0.07 -0.39 3.07 -90.62 -0.28 -0.67 16 3 C -0.15 -0.79 9.18 37.16 0.34 -0.45 16 4 C -0.11 -0.84 4.66 -90.58 -0.42 -1.26 16 5 H 0.12 1.12 7.64 -51.93 -0.40 0.72 16 6 C -0.15 -1.02 9.88 -26.69 -0.26 -1.28 16 7 C -0.19 -1.45 5.22 -91.77 -0.48 -1.93 16 8 H 0.12 0.75 7.61 -51.93 -0.40 0.35 16 9 C 0.57 6.31 7.45 -10.98 -0.08 6.23 16 10 O -0.54 -8.14 17.03 5.56 0.09 -8.05 16 11 N -0.64 -6.05 2.41 -185.10 -0.45 -6.50 16 12 C 0.09 0.61 7.45 -8.38 -0.06 0.55 16 13 C 0.11 1.11 4.69 -67.68 -0.32 0.79 16 14 N -0.60 -7.55 3.12 -173.56 -0.54 -8.09 16 15 C 0.08 0.84 9.34 59.84 0.56 1.40 16 16 C 0.54 9.15 7.69 -10.98 -0.08 9.07 16 17 O -0.51 -10.38 15.37 5.56 0.09 -10.30 16 18 C -0.12 -2.28 4.71 36.01 0.17 -2.11 16 19 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 20 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 21 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 22 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 23 N -0.88 -26.32 13.97 55.49 0.78 -25.54 16 24 Si 0.86 21.54 27.74 -169.99 -4.72 16.82 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.24 -5.90 6.74 56.52 0.38 -5.51 16 28 C 0.09 0.86 8.24 -8.53 -0.07 0.79 16 29 H 0.05 0.31 7.29 -51.93 -0.38 -0.07 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.38 7.90 -51.93 -0.41 -0.03 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.11 0.55 8.05 -51.93 -0.42 0.14 16 38 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.54 7.28 -51.92 -0.38 0.17 16 40 H 0.13 1.34 7.29 -51.93 -0.38 0.96 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16 43 H 0.07 0.62 5.36 -51.93 -0.28 0.35 16 44 H 0.10 1.71 7.40 -51.91 -0.38 1.33 16 45 H 0.10 1.77 8.11 -51.92 -0.42 1.35 16 46 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 47 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 403.40 15.07 6.08 6.08 Total: -1.00 -35.17 403.40 -9.08 -44.25 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -7.98 Total: -1.95 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -0.44 Total: -1.22 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: -0.21 Total: -40.13 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.18 Total: -18.34 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.72 Total: 16.82 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.17 -9.08 -44.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506258961.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.134 kcal (2) G-P(sol) polarization free energy of solvation -35.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds