Wall clock time and date at job start Sat Apr 11 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47589 * 2 1 4 4 C 1.53007 * 109.47153 * 119.99914 * 2 1 3 5 5 H 1.08997 * 115.54680 * 274.33154 * 4 2 1 6 6 C 1.53073 * 117.51648 * 128.60639 * 4 2 1 7 7 C 1.52998 * 59.98411 * 252.52557 * 6 4 2 8 8 H 1.08996 * 117.50072 * 107.50175 * 7 6 4 9 9 C 1.50706 * 117.49548 * 252.50153 * 7 6 4 10 10 O 1.21274 * 120.00042 * 68.46732 * 9 7 6 11 11 N 1.34777 * 119.99766 * 248.74267 * 9 7 6 12 12 C 1.47067 * 136.05761 * 359.63413 * 11 9 7 13 13 C 1.53757 * 87.89162 * 152.95826 * 12 11 9 14 14 N 1.46504 * 114.39371 * 272.67967 * 13 12 11 15 15 C 1.46495 * 120.00031 * 33.57717 * 14 13 12 16 16 C 1.34772 * 119.99419 * 213.58351 * 14 13 12 17 17 O 1.21282 * 120.00369 * 359.97438 * 16 14 13 18 18 C 1.50707 * 119.99875 * 180.02562 * 16 14 13 19 19 S 1.80993 * 109.47210 * 180.02562 * 18 16 14 20 20 C 1.76206 * 99.99995 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99881 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00113 * 179.97438 * 20 19 18 23 23 N 1.31631 * 120.00306 * 179.97438 * 22 20 19 24 24 Si 1.86809 * 119.99855 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47149 * 90.00078 * 24 22 20 26 26 H 1.48499 * 109.46962 * 209.99983 * 24 22 20 27 27 H 1.48493 * 109.47074 * 329.99807 * 24 22 20 28 28 C 1.47060 * 136.05953 * 179.97438 * 11 9 7 29 29 H 1.08996 * 109.47493 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46998 * 300.00046 * 1 2 3 31 31 H 1.08995 * 109.47289 * 60.00125 * 1 2 3 32 32 H 1.09000 * 109.47495 * 239.99387 * 2 1 3 33 33 H 1.08992 * 109.47178 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46749 * 299.99955 * 3 2 1 35 35 H 1.09000 * 109.47203 * 59.99208 * 3 2 1 36 36 H 1.08992 * 117.51419 * 145.04610 * 6 4 2 37 37 H 1.09001 * 117.49003 * 0.02562 * 6 4 2 38 38 H 1.09000 * 113.47067 * 267.69524 * 12 11 9 39 39 H 1.09009 * 113.47132 * 38.13010 * 12 11 9 40 40 H 1.08998 * 114.26786 * 139.78622 * 13 12 11 41 41 H 1.09003 * 109.46512 * 90.00577 * 15 14 13 42 42 H 1.09001 * 109.47096 * 210.00139 * 15 14 13 43 43 H 1.08998 * 109.47557 * 330.00173 * 15 14 13 44 44 H 1.09007 * 109.46410 * 299.99577 * 18 16 14 45 45 H 1.08996 * 109.47064 * 59.99657 * 18 16 14 46 46 H 0.96994 * 120.00122 * 179.97438 * 23 22 20 47 47 H 1.09004 * 113.46777 * 321.86864 * 28 11 9 48 48 H 1.09001 * 113.46844 * 92.30643 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 2.1267 -0.1060 2.1448 6 6 3.0744 -1.8322 1.0518 7 6 1.6357 -2.1852 1.4344 8 1 1.0064 -2.6345 0.6662 9 6 1.3878 -2.6661 2.8410 10 8 1.5144 -1.9020 3.7742 11 7 1.0308 -3.9468 3.0622 12 6 0.7818 -5.1351 2.2323 13 6 1.1827 -5.9944 3.4428 14 7 2.6194 -6.2623 3.5453 15 6 3.5859 -5.2547 3.1020 16 6 3.0517 -7.4359 4.0474 17 8 2.2515 -8.2700 4.4148 18 6 4.5296 -7.7114 4.1535 19 16 4.7872 -9.3577 4.8600 20 6 6.5483 -9.4147 4.8688 21 1 7.1177 -8.5738 4.5012 22 6 7.2039 -10.5403 5.3482 23 7 8.5195 -10.5831 5.3543 24 14 6.2191 -11.9945 5.9847 25 1 5.9460 -12.9343 4.8679 26 1 6.9944 -12.6930 7.0411 27 1 4.9339 -11.5121 6.5511 28 6 0.7130 -4.7693 4.2391 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.8415 -1.9478 1.8173 37 1 3.3916 -2.0487 0.0317 38 1 -0.2628 -5.2521 1.9439 39 1 1.4654 -5.2261 1.3881 40 1 0.5674 -6.8828 3.5849 41 1 3.8342 -4.5979 3.9357 42 1 4.4901 -5.7496 2.7476 43 1 3.1527 -4.6668 2.2928 44 1 4.9793 -7.6677 3.1615 45 1 4.9934 -6.9631 4.7961 46 1 8.9775 -11.3696 5.6896 47 1 1.3379 -4.5486 5.1045 48 1 -0.3498 -4.7897 4.4803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506258961.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:56 Heat of formation + Delta-G solvation = -27.447045 kcal Electronic energy + Delta-G solvation = -27217.011099 eV Core-core repulsion = 23399.778424 eV Total energy + Delta-G solvation = -3817.232675 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.13717 -40.67856 -39.51379 -38.09071 -35.77728 -34.67227 -34.23911 -31.64372 -30.12354 -28.03842 -27.89708 -27.82435 -27.21135 -25.12920 -23.79475 -22.94180 -20.97590 -20.57148 -19.86696 -19.36350 -18.51791 -18.18389 -17.36812 -17.13136 -16.93278 -16.82773 -16.53172 -15.97789 -15.66559 -15.33825 -14.95700 -14.78584 -14.66784 -14.52859 -14.34241 -13.99568 -13.68179 -13.64353 -13.49880 -13.41875 -13.32990 -13.10326 -13.02137 -13.01104 -12.89744 -12.64613 -12.18818 -12.12647 -12.05810 -11.87301 -11.57277 -11.23784 -11.16883 -11.06967 -11.05025 -10.81188 -10.54200 -9.88288 -9.78090 -9.00438 -8.51445 -6.22700 0.95456 1.31926 1.38441 1.42158 1.45414 1.52840 1.70900 1.95461 2.25041 2.66645 2.82112 2.86735 3.22765 3.30660 3.54836 3.70538 3.76500 3.82925 4.03110 4.06772 4.12108 4.17136 4.23765 4.33379 4.38794 4.39617 4.44213 4.47389 4.56686 4.61098 4.66676 4.68824 4.77508 4.81954 4.83841 4.87341 4.98287 5.03976 5.07027 5.21821 5.27598 5.43055 5.44750 5.53075 5.70500 6.10668 6.11817 6.62687 6.93371 6.99525 7.05515 8.60874 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.002137 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.618342 B =13096.487170 C =13899.625565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.146 4.146 4 C -0.116 4.116 5 H 0.089 0.911 6 C -0.138 4.138 7 C -0.182 4.182 8 H 0.147 0.853 9 C 0.566 3.434 10 O -0.591 6.591 11 N -0.644 5.644 12 C 0.106 3.894 13 C 0.101 3.899 14 N -0.589 5.589 15 C 0.078 3.922 16 C 0.541 3.459 17 O -0.550 6.550 18 C -0.108 4.108 19 S -0.170 6.170 20 C -0.529 4.529 21 H 0.061 0.939 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.260 1.260 26 H -0.261 1.261 27 H -0.236 1.236 28 C 0.087 3.913 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.133 0.867 41 H 0.045 0.955 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.115 0.885 45 H 0.104 0.896 46 H 0.277 0.723 47 H 0.056 0.944 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.703 20.433 -15.540 31.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 C -0.203 4.203 4 C -0.135 4.135 5 H 0.107 0.893 6 C -0.175 4.175 7 C -0.203 4.203 8 H 0.165 0.835 9 C 0.358 3.642 10 O -0.472 6.472 11 N -0.378 5.378 12 C -0.017 4.017 13 C -0.004 4.004 14 N -0.321 5.321 15 C -0.064 4.064 16 C 0.329 3.671 17 O -0.428 6.428 18 C -0.259 4.259 19 S 0.057 5.943 20 C -0.677 4.677 21 H 0.079 0.921 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.184 1.184 26 H -0.185 1.185 27 H -0.160 1.160 28 C -0.037 4.037 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.121 0.879 40 H 0.150 0.850 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.133 0.867 45 H 0.122 0.878 46 H 0.086 0.914 47 H 0.074 0.926 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.567 19.757 -14.517 31.368 hybrid contribution 1.319 0.443 0.518 1.485 sum -18.248 20.200 -13.999 30.610 Atomic orbital electron populations 1.21823 0.94748 1.02038 1.01699 1.20749 0.95838 0.96182 0.95193 1.21811 1.01287 0.95271 1.01943 1.22469 1.01839 0.89001 1.00223 0.89311 1.23219 0.89465 1.00742 1.04101 1.22224 1.02766 1.01438 0.93840 0.83503 1.19795 0.75046 0.78836 0.90544 1.90697 1.54797 1.54820 1.46846 1.49726 1.67266 1.08622 1.12226 1.23685 1.04610 0.78397 0.94984 1.22426 0.81719 0.98407 0.97827 1.47351 1.06594 1.15615 1.62578 1.21961 0.92701 0.91370 1.00416 1.19931 0.89580 0.81356 0.76248 1.90683 1.56767 1.46461 1.48846 1.23288 0.96153 1.00541 1.05927 1.84644 1.06886 1.19754 1.83033 1.22450 0.90310 1.06268 1.48680 0.92070 1.25588 0.95524 1.00650 0.94338 1.70017 1.08427 1.31138 1.45875 0.85852 0.80637 0.79907 0.79893 1.18447 1.18509 1.16003 1.23600 1.02469 0.86738 0.90844 0.92334 0.93933 0.91466 0.89312 0.92390 0.91412 0.93519 0.89429 0.85005 0.84581 0.87880 0.84974 0.93648 0.89883 0.88769 0.86689 0.87770 0.91374 0.92556 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.03 71.98 0.65 -0.74 16 2 C -0.06 -0.59 3.07 -10.79 -0.03 -0.62 16 3 C -0.15 -1.42 9.18 71.98 0.66 -0.76 16 4 C -0.12 -1.63 4.66 -10.77 -0.05 -1.68 16 5 H 0.09 1.78 7.64 -2.39 -0.02 1.76 16 6 C -0.14 -1.59 9.88 30.62 0.30 -1.29 16 7 C -0.18 -2.40 5.22 -11.54 -0.06 -2.46 16 8 H 0.15 1.18 7.61 -2.39 -0.02 1.16 16 9 C 0.57 11.76 7.45 87.66 0.65 12.41 16 10 O -0.59 -18.23 17.03 -3.01 -0.05 -18.29 16 11 N -0.64 -10.62 2.41 -857.94 -2.07 -12.69 16 12 C 0.11 1.03 7.45 83.26 0.62 1.65 16 13 C 0.10 1.75 4.69 45.54 0.21 1.96 16 14 N -0.59 -13.74 3.12 -821.41 -2.56 -16.30 16 15 C 0.08 1.50 9.34 127.77 1.19 2.69 16 16 C 0.54 17.87 7.69 87.66 0.67 18.55 16 17 O -0.55 -21.85 15.37 -3.04 -0.05 -21.89 16 18 C -0.11 -4.03 4.71 71.24 0.34 -3.69 16 19 S -0.17 -8.42 18.55 -56.49 -1.05 -9.47 16 20 C -0.53 -30.56 10.04 67.95 0.68 -29.88 16 21 H 0.06 3.73 8.03 -2.91 -0.02 3.71 16 22 C 0.04 2.59 5.50 84.86 0.47 3.06 16 23 N -0.92 -55.55 13.97 21.65 0.30 -55.24 16 24 Si 0.92 44.51 27.74 68.60 1.90 46.41 16 25 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.24 -11.44 6.74 99.48 0.67 -10.77 16 28 C 0.09 1.55 8.24 83.17 0.69 2.23 16 29 H 0.06 0.50 7.29 -2.39 -0.02 0.49 16 30 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 0.60 7.90 -2.39 -0.02 0.58 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.13 0.86 8.05 -2.39 -0.02 0.84 16 38 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.10 0.76 7.28 -2.38 -0.02 0.74 16 40 H 0.13 2.39 7.29 -2.39 -0.02 2.37 16 41 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.54 6.44 -2.39 -0.02 1.53 16 43 H 0.09 1.38 5.36 -2.39 -0.01 1.37 16 44 H 0.12 3.88 7.40 -2.39 -0.02 3.86 16 45 H 0.10 3.74 8.11 -2.40 -0.02 3.72 16 46 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 47 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 48 H 0.12 1.56 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -78.96 403.40 4.33 -74.63 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.90 Total: 11.42 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 6.99 Total: 1.42 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -4.32 Total: -84.23 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -0.10 Total: -40.18 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.90 Total: 46.41 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.05 Total: -9.47 kcal Total: -78.96 4.33 -74.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506258961.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.184 kcal (2) G-P(sol) polarization free energy of solvation -78.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds