Wall clock time and date at job start Sat Apr 11 2020 06:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47015 * 2 1 4 4 C 1.52999 * 109.46994 * 119.99755 * 2 1 3 5 5 H 1.08995 * 109.47098 * 185.00096 * 4 2 1 6 6 C 1.53004 * 109.47083 * 305.00173 * 4 2 1 7 7 C 1.53003 * 109.46807 * 184.99648 * 6 4 2 8 8 N 1.46501 * 109.46843 * 179.97438 * 7 6 4 9 9 C 1.46495 * 120.00514 * 270.00370 * 8 7 6 10 10 C 1.34783 * 119.99676 * 90.00251 * 8 7 6 11 11 O 1.21284 * 119.99848 * 0.02562 * 10 8 7 12 12 C 1.50700 * 119.99817 * 179.97438 * 10 8 7 13 13 O 1.42901 * 109.46857 * 179.97438 * 12 10 8 14 14 C 1.36229 * 117.00090 * 179.97438 * 13 12 10 15 15 C 1.38669 * 122.58995 * 180.02562 * 14 13 12 16 16 C 1.33426 * 114.88765 * 179.97438 * 15 14 13 17 17 S 1.75867 * 109.65821 * 359.97438 * 16 15 14 18 18 C 1.33628 * 122.58211 * 359.71628 * 14 13 12 19 19 N 1.46498 * 109.47257 * 65.00162 * 4 2 1 20 20 C 1.36943 * 119.99752 * 84.72207 * 19 4 2 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 4 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 4 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47290 * 120.00044 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00049 * 24 22 20 28 28 H 1.08995 * 109.47325 * 299.99981 * 1 2 3 29 29 H 1.09008 * 109.46564 * 60.00321 * 1 2 3 30 30 H 1.08997 * 109.46808 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47325 * 240.00019 * 2 1 3 32 32 H 1.09000 * 109.47552 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47107 * 299.99722 * 3 2 1 34 34 H 1.09002 * 109.47383 * 59.99711 * 3 2 1 35 35 H 1.08993 * 109.47108 * 304.99684 * 6 4 2 36 36 H 1.08998 * 109.47048 * 65.00196 * 6 4 2 37 37 H 1.08988 * 109.47304 * 300.00405 * 7 6 4 38 38 H 1.08998 * 109.46869 * 60.00439 * 7 6 4 39 39 H 1.09000 * 109.47174 * 89.99725 * 9 8 7 40 40 H 1.08995 * 109.47682 * 209.99929 * 9 8 7 41 41 H 1.09006 * 109.47015 * 329.99981 * 9 8 7 42 42 H 1.08997 * 109.47588 * 300.00175 * 12 10 8 43 43 H 1.09004 * 109.47017 * 60.00726 * 12 10 8 44 44 H 1.08002 * 122.55081 * 0.02562 * 15 14 13 45 45 H 1.07995 * 125.17313 * 180.02562 * 16 15 14 46 46 H 1.07993 * 125.20007 * 359.97438 * 18 14 13 47 47 H 0.97001 * 120.00384 * 265.00562 * 19 4 2 48 48 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1263 -0.6443 1.2952 6 6 1.4299 -0.0761 2.4953 7 6 2.0342 -0.7143 3.7477 8 7 1.4504 -0.0962 4.9408 9 6 2.0802 1.0846 5.5368 10 6 0.3339 -0.6140 5.4902 11 8 -0.1872 -1.5919 4.9971 12 6 -0.2663 0.0214 6.7178 13 8 -1.4353 -0.7031 7.1060 14 6 -2.1027 -0.2566 8.2065 15 6 -3.2493 -0.8720 8.6853 16 6 -3.7773 -0.3073 9.7728 17 16 -2.8053 1.0780 10.2512 18 6 -1.6994 0.8046 8.9113 19 7 1.6525 -2.1328 1.1907 20 6 2.4317 -3.0290 0.5088 21 1 3.3343 -2.6959 0.0180 22 6 2.0615 -4.3654 0.4484 23 7 0.9613 -4.7712 1.0461 24 14 3.1248 -5.5880 -0.4812 25 1 4.2981 -4.8847 -1.0588 26 1 3.5919 -6.6463 0.4501 27 1 2.3300 -6.2052 -1.5733 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6436 0.9926 2.4928 36 1 0.3509 -0.2309 2.4933 37 1 1.8205 -1.7830 3.7502 38 1 3.1131 -0.5595 3.7498 39 1 1.6611 1.9853 5.0882 40 1 1.8937 1.0930 6.6106 41 1 3.1545 1.0542 5.3549 42 1 0.4605 0.0010 7.5299 43 1 -0.5360 1.0543 6.4974 44 1 -3.6816 -1.7426 8.2144 45 1 -4.6659 -0.6495 10.2824 46 1 -0.8280 1.4034 8.6913 47 1 0.8418 -2.4319 1.6314 48 1 0.7028 -5.7052 1.0042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506479933.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:08 Heat of formation + Delta-G solvation = -23.729459 kcal Electronic energy + Delta-G solvation = -27591.617245 eV Core-core repulsion = 23774.545776 eV Total energy + Delta-G solvation = -3817.071469 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.42396 -39.30033 -37.41452 -36.12826 -35.38864 -33.09139 -31.47099 -29.91154 -29.34730 -28.48605 -26.84778 -26.58400 -25.01339 -23.77006 -22.80506 -21.92831 -19.96446 -19.38335 -18.42409 -18.33817 -17.22537 -17.14747 -16.69293 -16.58864 -15.80874 -15.20701 -14.70642 -14.44872 -14.30393 -14.02726 -13.80970 -13.50987 -13.36603 -13.26743 -13.00848 -12.91146 -12.88866 -12.71875 -12.47352 -12.02588 -12.00501 -11.75882 -11.52597 -11.18483 -11.15508 -11.09217 -10.90587 -10.80907 -10.46126 -10.32102 -10.15715 -10.03421 -9.77167 -9.52314 -9.46951 -9.13076 -8.82927 -8.51832 -8.26153 -6.82862 -5.64864 -2.93990 0.69184 1.32760 1.67992 2.46654 2.51553 2.66783 3.47066 3.48541 3.53593 3.56375 4.34825 4.59075 4.67076 4.69610 4.80262 4.94388 4.98287 5.09270 5.21509 5.39341 5.44119 5.47495 5.51247 5.61403 5.66582 5.69545 5.74458 5.81538 5.91382 5.93432 5.98373 6.13844 6.24351 6.34246 6.36418 6.43975 6.47199 6.65970 6.74395 6.86520 6.94013 7.00651 7.12625 7.17874 7.41923 7.79356 8.26184 8.52482 9.63730 10.23318 10.57999 11.56839 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013436 B = 0.002427 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.501611 B =11532.697162 C =12649.018373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 C -0.144 4.144 4 C 0.186 3.814 5 H 0.045 0.955 6 C -0.137 4.137 7 C 0.120 3.880 8 N -0.614 5.614 9 C 0.075 3.925 10 C 0.507 3.493 11 O -0.494 6.494 12 C 0.046 3.954 13 O -0.276 6.276 14 C 0.121 3.879 15 C -0.138 4.138 16 C -0.186 4.186 17 S 0.110 5.890 18 C -0.330 4.330 19 N -0.720 5.720 20 C -0.238 4.238 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.926 5.926 24 Si 0.901 3.099 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.293 1.293 28 H 0.043 0.957 29 H 0.035 0.965 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.154 0.846 45 H 0.173 0.827 46 H 0.166 0.834 47 H 0.387 0.613 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.531 18.028 17.709 25.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.137 4.137 3 C -0.202 4.202 4 C 0.075 3.925 5 H 0.063 0.937 6 C -0.176 4.176 7 C -0.001 4.001 8 N -0.350 5.350 9 C -0.069 4.069 10 C 0.292 3.708 11 O -0.367 6.367 12 C -0.032 4.032 13 O -0.188 6.188 14 C 0.065 3.935 15 C -0.170 4.170 16 C -0.321 4.321 17 S 0.370 5.630 18 C -0.465 4.465 19 N -0.361 5.361 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.574 5.574 24 Si 0.733 3.267 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.221 1.221 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.171 0.829 45 H 0.190 0.810 46 H 0.183 0.817 47 H 0.221 0.779 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.798 18.254 18.380 26.181 hybrid contribution 0.599 -1.470 -1.510 2.191 sum -3.199 16.784 16.870 24.011 Atomic orbital electron populations 1.21732 0.96028 1.02264 0.99390 1.21795 0.95909 0.94400 1.01553 1.21885 1.00301 0.97487 1.00491 1.20161 0.96394 0.85627 0.90317 0.93719 1.22247 1.01607 0.98834 0.94904 1.21670 0.96430 1.00124 0.81900 1.47857 1.26740 1.30455 1.29962 1.21838 0.99285 0.87890 0.97866 1.19926 0.81249 0.84797 0.84828 1.90870 1.59274 1.24737 1.61774 1.22535 0.87457 0.96226 0.97030 1.86252 1.38580 1.52752 1.41248 1.17944 0.93450 0.93579 0.88554 1.19553 0.95881 1.03547 0.98027 1.25518 1.05007 1.00385 1.01218 1.84113 1.20015 1.29732 1.29134 1.25311 1.09323 1.06888 1.04992 1.42499 1.28996 1.01329 1.63287 1.19230 1.03537 0.88748 1.25380 0.91350 1.24734 0.97763 0.97183 1.01206 1.69698 1.24395 1.15426 1.47873 0.86208 0.79528 0.81773 0.79202 1.20709 1.22043 1.22050 0.93792 0.94630 0.91647 0.91269 0.93405 0.93893 0.93288 0.92355 0.91449 0.88070 0.90869 0.92473 0.91687 0.90505 0.89368 0.89343 0.82877 0.80959 0.81677 0.77882 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.59 37.16 0.32 -2.13 16 2 C -0.12 -2.06 2.87 -90.62 -0.26 -2.32 16 3 C -0.14 -2.03 8.95 37.16 0.33 -1.70 16 4 C 0.19 3.60 2.06 -67.93 -0.14 3.46 16 5 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 6 C -0.14 -2.26 4.28 -26.73 -0.11 -2.38 16 7 C 0.12 1.95 5.34 -4.04 -0.02 1.93 16 8 N -0.61 -8.18 2.87 -181.58 -0.52 -8.70 16 9 C 0.07 0.59 10.29 59.84 0.62 1.21 16 10 C 0.51 7.94 7.75 -10.98 -0.09 7.86 16 11 O -0.49 -10.67 16.08 -14.36 -0.23 -10.90 16 12 C 0.05 0.53 3.90 36.01 0.14 0.67 16 13 O -0.28 -3.96 9.74 -40.38 -0.39 -4.36 16 14 C 0.12 1.43 6.64 -41.04 -0.27 1.15 16 15 C -0.14 -1.44 10.17 -41.10 -0.42 -1.86 16 16 C -0.19 -1.50 11.22 29.05 0.33 -1.17 16 17 S 0.11 0.86 23.34 -107.50 -2.51 -1.64 16 18 C -0.33 -3.08 10.09 29.12 0.29 -2.78 16 19 N -0.72 -17.87 4.03 -53.43 -0.22 -18.09 16 20 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 24 Si 0.90 22.80 29.55 -169.99 -5.02 17.78 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 28 H 0.04 0.73 6.46 -51.93 -0.34 0.40 16 29 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.06 1.38 7.75 -51.93 -0.40 0.98 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.63 6.46 -51.93 -0.34 0.30 16 35 H 0.06 0.81 6.34 -51.93 -0.33 0.48 16 36 H 0.07 1.27 6.65 -51.93 -0.35 0.92 16 37 H 0.10 2.14 7.03 -51.94 -0.37 1.77 16 38 H 0.07 1.05 7.89 -51.93 -0.41 0.64 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.37 6.44 -51.93 -0.33 0.03 16 41 H 0.08 0.54 7.89 -51.93 -0.41 0.13 16 42 H 0.09 0.76 7.10 -51.93 -0.37 0.39 16 43 H 0.09 0.77 7.83 -51.93 -0.41 0.36 16 44 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 45 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.17 1.18 7.02 -52.49 -0.37 0.81 16 47 H 0.39 10.68 7.80 -40.82 -0.32 10.36 16 48 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 401.30 15.07 6.05 6.05 Total: -1.00 -34.71 401.30 -9.31 -44.02 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -7.66 Total: 9.15 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 0.47 Total: -5.24 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.01 Total: -54.86 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.62 Total: -15.26 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.71 -9.31 -44.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506479933.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.290 kcal (2) G-P(sol) polarization free energy of solvation -34.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds