Wall clock time and date at job start Sat Apr 11 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47015 * 2 1 4 4 C 1.52999 * 109.46994 * 119.99755 * 2 1 3 5 5 H 1.08995 * 109.47098 * 185.00096 * 4 2 1 6 6 C 1.53004 * 109.47083 * 305.00173 * 4 2 1 7 7 C 1.53003 * 109.46807 * 184.99648 * 6 4 2 8 8 N 1.46501 * 109.46843 * 179.97438 * 7 6 4 9 9 C 1.46495 * 120.00514 * 270.00370 * 8 7 6 10 10 C 1.34783 * 119.99676 * 90.00251 * 8 7 6 11 11 O 1.21284 * 119.99848 * 0.02562 * 10 8 7 12 12 C 1.50700 * 119.99817 * 179.97438 * 10 8 7 13 13 O 1.42901 * 109.46857 * 179.97438 * 12 10 8 14 14 C 1.36229 * 117.00090 * 179.97438 * 13 12 10 15 15 C 1.38669 * 122.58995 * 180.02562 * 14 13 12 16 16 C 1.33426 * 114.88765 * 179.97438 * 15 14 13 17 17 S 1.75867 * 109.65821 * 359.97438 * 16 15 14 18 18 C 1.33628 * 122.58211 * 359.71628 * 14 13 12 19 19 N 1.46498 * 109.47257 * 65.00162 * 4 2 1 20 20 C 1.36943 * 119.99752 * 84.72207 * 19 4 2 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 4 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 4 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47290 * 120.00044 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00049 * 24 22 20 28 28 H 1.08995 * 109.47325 * 299.99981 * 1 2 3 29 29 H 1.09008 * 109.46564 * 60.00321 * 1 2 3 30 30 H 1.08997 * 109.46808 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47325 * 240.00019 * 2 1 3 32 32 H 1.09000 * 109.47552 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47107 * 299.99722 * 3 2 1 34 34 H 1.09002 * 109.47383 * 59.99711 * 3 2 1 35 35 H 1.08993 * 109.47108 * 304.99684 * 6 4 2 36 36 H 1.08998 * 109.47048 * 65.00196 * 6 4 2 37 37 H 1.08988 * 109.47304 * 300.00405 * 7 6 4 38 38 H 1.08998 * 109.46869 * 60.00439 * 7 6 4 39 39 H 1.09000 * 109.47174 * 89.99725 * 9 8 7 40 40 H 1.08995 * 109.47682 * 209.99929 * 9 8 7 41 41 H 1.09006 * 109.47015 * 329.99981 * 9 8 7 42 42 H 1.08997 * 109.47588 * 300.00175 * 12 10 8 43 43 H 1.09004 * 109.47017 * 60.00726 * 12 10 8 44 44 H 1.08002 * 122.55081 * 0.02562 * 15 14 13 45 45 H 1.07995 * 125.17313 * 180.02562 * 16 15 14 46 46 H 1.07993 * 125.20007 * 359.97438 * 18 14 13 47 47 H 0.97001 * 120.00384 * 265.00562 * 19 4 2 48 48 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1263 -0.6443 1.2952 6 6 1.4299 -0.0761 2.4953 7 6 2.0342 -0.7143 3.7477 8 7 1.4504 -0.0962 4.9408 9 6 2.0802 1.0846 5.5368 10 6 0.3339 -0.6140 5.4902 11 8 -0.1872 -1.5919 4.9971 12 6 -0.2663 0.0214 6.7178 13 8 -1.4353 -0.7031 7.1060 14 6 -2.1027 -0.2566 8.2065 15 6 -3.2493 -0.8720 8.6853 16 6 -3.7773 -0.3073 9.7728 17 16 -2.8053 1.0780 10.2512 18 6 -1.6994 0.8046 8.9113 19 7 1.6525 -2.1328 1.1907 20 6 2.4317 -3.0290 0.5088 21 1 3.3343 -2.6959 0.0180 22 6 2.0615 -4.3654 0.4484 23 7 0.9613 -4.7712 1.0461 24 14 3.1248 -5.5880 -0.4812 25 1 4.2981 -4.8847 -1.0588 26 1 3.5919 -6.6463 0.4501 27 1 2.3300 -6.2052 -1.5733 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6436 0.9926 2.4928 36 1 0.3509 -0.2309 2.4933 37 1 1.8205 -1.7830 3.7502 38 1 3.1131 -0.5595 3.7498 39 1 1.6611 1.9853 5.0882 40 1 1.8937 1.0930 6.6106 41 1 3.1545 1.0542 5.3549 42 1 0.4605 0.0010 7.5299 43 1 -0.5360 1.0543 6.4974 44 1 -3.6816 -1.7426 8.2144 45 1 -4.6659 -0.6495 10.2824 46 1 -0.8280 1.4034 8.6913 47 1 0.8418 -2.4319 1.6314 48 1 0.7028 -5.7052 1.0042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506479933.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:07 Heat of formation + Delta-G solvation = -45.844617 kcal Electronic energy + Delta-G solvation = -27592.576230 eV Core-core repulsion = 23774.545776 eV Total energy + Delta-G solvation = -3818.030454 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42066 -40.32671 -38.93662 -36.96921 -36.59368 -35.05809 -32.90415 -31.66200 -30.06567 -29.58047 -27.95312 -27.77218 -26.51350 -25.01220 -24.26576 -23.27886 -20.75011 -20.43874 -19.86518 -19.25257 -19.14607 -18.08040 -17.75973 -17.54471 -16.89925 -16.78021 -16.21252 -15.66491 -15.52717 -15.33260 -15.00354 -14.88804 -14.68014 -14.33090 -14.20715 -14.08566 -13.66928 -13.65630 -13.61845 -13.28572 -12.96617 -12.90456 -12.83345 -12.78832 -12.75590 -12.45150 -12.19224 -12.04773 -11.96815 -11.85206 -11.80905 -11.67349 -11.36801 -11.20033 -10.87928 -10.79582 -9.79583 -9.69032 -8.95106 -8.90740 -7.87867 -5.15788 0.01232 0.68696 0.99566 1.44567 1.45956 1.49960 1.55653 1.58548 1.71787 2.58027 2.59096 3.40443 3.44205 3.87063 3.92969 4.01465 4.02133 4.05744 4.12680 4.25313 4.33844 4.35727 4.42455 4.44587 4.53278 4.60326 4.71146 4.73921 4.85691 4.90555 4.92169 4.93755 4.95565 4.97668 5.12388 5.19287 5.22680 5.30185 5.35918 5.42205 5.53247 5.56150 5.63710 5.71986 6.17289 6.32757 6.39427 7.13518 7.37706 8.18126 8.39433 9.35687 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013436 B = 0.002427 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.501611 B =11532.697162 C =12649.018373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.111 4.111 3 C -0.133 4.133 4 C 0.179 3.821 5 H 0.051 0.949 6 C -0.119 4.119 7 C 0.125 3.875 8 N -0.607 5.607 9 C 0.063 3.937 10 C 0.496 3.504 11 O -0.574 6.574 12 C 0.054 3.946 13 O -0.318 6.318 14 C 0.090 3.910 15 C -0.173 4.173 16 C -0.178 4.178 17 S 0.152 5.848 18 C -0.326 4.326 19 N -0.731 5.731 20 C -0.225 4.225 21 H 0.078 0.922 22 C -0.083 4.083 23 N -0.972 5.972 24 Si 0.968 3.032 25 H -0.261 1.261 26 H -0.298 1.298 27 H -0.299 1.299 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.019 0.981 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.038 0.962 37 H 0.041 0.959 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.143 0.857 45 H 0.199 0.801 46 H 0.190 0.810 47 H 0.367 0.633 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.848 22.332 19.231 29.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.133 4.133 3 C -0.191 4.191 4 C 0.070 3.930 5 H 0.069 0.931 6 C -0.158 4.158 7 C 0.003 3.997 8 N -0.340 5.340 9 C -0.078 4.078 10 C 0.284 3.716 11 O -0.452 6.452 12 C -0.024 4.024 13 O -0.232 6.232 14 C 0.034 3.966 15 C -0.205 4.205 16 C -0.313 4.313 17 S 0.413 5.587 18 C -0.462 4.462 19 N -0.370 5.370 20 C -0.357 4.357 21 H 0.096 0.904 22 C -0.275 4.275 23 N -0.624 5.624 24 Si 0.798 3.202 25 H -0.185 1.185 26 H -0.226 1.226 27 H -0.227 1.227 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.160 0.840 45 H 0.216 0.784 46 H 0.207 0.793 47 H 0.199 0.801 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.046 22.676 19.914 30.249 hybrid contribution 0.083 -2.652 -1.895 3.260 sum -1.963 20.024 18.019 27.010 Atomic orbital electron populations 1.21661 0.96329 0.99814 1.00969 1.21672 0.95586 0.96934 0.99075 1.21783 1.01015 0.94129 1.02174 1.20473 0.96855 0.83109 0.92569 0.93121 1.22074 0.99433 1.00726 0.93559 1.21376 0.97804 0.97112 0.83456 1.47913 1.25988 1.31426 1.28714 1.22277 0.99957 0.85932 0.99592 1.20860 0.81194 0.83913 0.85678 1.90840 1.61732 1.28352 1.64282 1.22621 0.87498 0.96619 0.95614 1.86190 1.39836 1.54422 1.42765 1.18193 0.94316 0.95214 0.88864 1.19686 0.96801 1.04397 0.99587 1.25873 1.05382 0.99984 1.00072 1.83990 1.18671 1.28495 1.27556 1.25672 1.09982 1.05843 1.04690 1.42698 1.27954 1.03623 1.62705 1.19653 1.03300 0.89217 1.23564 0.90382 1.25552 0.99353 0.99348 1.03254 1.69898 1.26802 1.15101 1.50578 0.85140 0.78334 0.79250 0.77503 1.18545 1.22598 1.22652 0.92551 0.92615 0.96138 0.94075 0.92207 0.92476 0.91361 0.88237 0.94296 0.94031 0.88453 0.90188 0.88733 0.88970 0.86071 0.85993 0.83951 0.78375 0.79270 0.80133 0.94579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 8.59 71.98 0.62 -4.08 16 2 C -0.11 -3.90 2.87 -10.79 -0.03 -3.93 16 3 C -0.13 -3.27 8.95 71.98 0.64 -2.63 16 4 C 0.18 6.92 2.06 44.99 0.09 7.01 16 5 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 6 C -0.12 -3.87 4.28 30.60 0.13 -3.74 16 7 C 0.13 4.10 5.34 86.38 0.46 4.56 16 8 N -0.61 -15.47 2.87 -846.77 -2.43 -17.90 16 9 C 0.06 0.74 10.29 127.77 1.31 2.05 16 10 C 0.50 15.88 7.75 87.66 0.68 16.56 16 11 O -0.57 -27.00 16.08 16.00 0.26 -26.74 16 12 C 0.05 1.17 3.90 71.24 0.28 1.44 16 13 O -0.32 -9.43 9.74 -77.13 -0.75 -10.18 16 14 C 0.09 2.09 6.64 21.33 0.14 2.23 16 15 C -0.17 -3.70 10.17 21.28 0.22 -3.48 16 16 C -0.18 -2.62 11.22 66.73 0.75 -1.87 16 17 S 0.15 1.97 23.34 -56.49 -1.32 0.65 16 18 C -0.33 -5.30 10.09 66.77 0.67 -4.63 16 19 N -0.73 -38.08 4.03 -322.94 -1.30 -39.38 16 20 C -0.23 -12.81 9.93 84.03 0.83 -11.98 16 21 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 22 C -0.08 -5.04 5.50 84.86 0.47 -4.57 16 23 N -0.97 -64.17 13.06 21.65 0.28 -63.88 16 24 Si 0.97 48.48 29.55 68.60 2.03 50.51 16 25 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 26 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 27 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 28 H 0.06 1.86 6.46 -2.39 -0.02 1.85 16 29 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.02 0.89 7.75 -2.39 -0.02 0.87 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.43 6.46 -2.39 -0.02 1.41 16 35 H 0.10 2.41 6.34 -2.39 -0.02 2.39 16 36 H 0.04 1.50 6.65 -2.39 -0.02 1.49 16 37 H 0.04 1.89 7.03 -2.39 -0.02 1.87 16 38 H 0.10 2.66 7.89 -2.39 -0.02 2.64 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.09 0.58 6.44 -2.39 -0.02 0.57 16 41 H 0.09 0.85 7.89 -2.38 -0.02 0.83 16 42 H 0.12 1.72 7.10 -2.39 -0.02 1.71 16 43 H 0.12 1.74 7.83 -2.39 -0.02 1.72 16 44 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 45 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 46 H 0.19 1.93 7.02 -2.91 -0.02 1.91 16 47 H 0.37 21.93 7.80 -92.71 -0.72 21.20 16 48 H 0.25 15.82 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -85.39 401.30 4.27 -81.13 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.23 Total: 32.85 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 7.27 Total: -7.05 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -3.45 Total: -121.17 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -0.49 Total: -36.92 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.03 Total: 50.51 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -1.32 Total: 0.65 kcal Total: -85.39 4.27 -81.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506479933.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.280 kcal (2) G-P(sol) polarization free energy of solvation -85.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds