Wall clock time and date at job start Sat Apr 11 2020 06:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.46976 * 2 1 4 4 C 1.50703 * 119.99779 * 87.57462 * 3 2 1 5 5 C 1.32986 * 120.00493 * 267.56707 * 3 2 1 6 6 C 1.47100 * 119.99836 * 7.58774 * 5 3 2 7 7 O 1.21616 * 120.00223 * 6.26769 * 6 5 3 8 8 N 1.34779 * 120.00072 * 186.27197 * 6 5 3 9 9 C 1.46506 * 119.99870 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.78055 * 36.78955 * 9 8 6 11 11 C 1.55157 * 110.72273 * 273.54295 * 9 8 6 12 12 C 1.54902 * 101.58296 * 206.13726 * 11 9 8 13 13 N 1.47419 * 104.83372 * 37.00883 * 12 11 9 14 14 C 1.34784 * 125.65064 * 155.83164 * 13 12 11 15 15 O 1.21276 * 120.00355 * 180.02562 * 14 13 12 16 16 C 1.50703 * 119.99476 * 0.02935 * 14 13 12 17 17 S 1.81006 * 109.46927 * 179.97438 * 16 14 13 18 18 C 1.76197 * 99.99955 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99927 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99703 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00314 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99808 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46955 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46922 * 120.00216 * 22 20 18 25 25 H 1.48494 * 109.47165 * 240.00493 * 22 20 18 26 26 C 1.47023 * 108.70603 * 335.87502 * 13 12 11 27 27 H 1.09001 * 109.87607 * 241.64129 * 26 13 12 28 28 C 1.52994 * 109.88534 * 120.47189 * 26 13 12 29 29 H 1.08997 * 109.47041 * 299.99945 * 1 2 3 30 30 H 1.09002 * 109.47274 * 59.99035 * 1 2 3 31 31 H 1.09000 * 109.47379 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46981 * 240.00561 * 2 1 3 33 33 H 1.08991 * 109.47066 * 120.00566 * 2 1 3 34 34 H 1.09005 * 109.46823 * 269.99767 * 4 3 2 35 35 H 1.09000 * 109.47251 * 29.99225 * 4 3 2 36 36 H 1.08994 * 109.47597 * 149.99408 * 4 3 2 37 37 H 1.07997 * 120.00235 * 187.58604 * 5 3 2 38 38 H 0.96992 * 120.00243 * 359.97438 * 8 6 5 39 39 H 1.09001 * 111.00329 * 324.21290 * 11 9 8 40 40 H 1.08998 * 111.00265 * 88.02121 * 11 9 8 41 41 H 1.09005 * 110.36985 * 155.85219 * 12 11 9 42 42 H 1.09002 * 110.36670 * 278.17277 * 12 11 9 43 43 H 1.08992 * 109.47422 * 299.99787 * 16 14 13 44 44 H 1.09007 * 109.47216 * 59.99863 * 16 14 13 45 45 H 0.96992 * 120.00002 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.47545 * 302.19688 * 28 26 13 47 47 H 1.09003 * 109.47225 * 62.19388 * 28 26 13 48 48 H 1.08999 * 109.47414 * 182.19052 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2314 2.1496 1.3040 5 6 2.3001 2.0316 -1.1506 6 6 1.9505 1.3854 -2.4250 7 8 1.3157 0.3480 -2.4268 8 7 2.3338 1.9428 -3.5907 9 6 1.9861 1.2989 -4.8599 10 1 0.9940 0.8504 -4.8069 11 6 3.0491 0.2367 -5.2459 12 6 2.9091 0.2028 -6.7882 13 7 2.6502 1.6017 -7.1745 14 6 2.9063 2.1436 -8.3817 15 8 2.6518 3.3112 -8.5887 16 6 3.5087 1.2985 -9.4744 17 16 3.7297 2.3046 -10.9628 18 6 4.4286 1.1018 -12.0442 19 1 4.5918 0.0926 -11.6960 20 6 4.7683 1.4511 -13.3438 21 7 4.5689 2.6810 -13.7684 22 14 5.5086 0.1757 -14.4905 23 1 5.6288 -1.1211 -13.7770 24 1 4.6312 0.0080 -15.6768 25 1 6.8538 0.6262 -14.9295 26 6 2.0674 2.3083 -6.0244 27 1 1.0687 2.6652 -6.2761 28 6 2.9604 3.4865 -5.6304 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.3113 2.6676 1.5748 35 1 2.4886 1.4338 2.0847 36 1 3.0381 2.8746 1.1957 37 1 2.7742 3.0019 -1.1494 38 1 2.8398 2.7703 -3.5893 39 1 4.0479 0.5585 -4.9512 40 1 2.8087 -0.7329 -4.8098 41 1 3.8328 -0.1523 -7.2453 42 1 2.0723 -0.4322 -7.0794 43 1 4.4755 0.9163 -9.1470 44 1 2.8441 0.4634 -9.6962 45 1 4.8066 2.9252 -14.6764 46 1 3.9615 3.1224 -5.3996 47 1 3.0131 4.1948 -6.4572 48 1 2.5428 3.9817 -4.7539 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001511142162.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:16 Heat of formation + Delta-G solvation = -52.597967 kcal Electronic energy + Delta-G solvation = -27030.714614 eV Core-core repulsion = 23212.391313 eV Total energy + Delta-G solvation = -3818.323301 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.76405 -39.64418 -37.62885 -36.18490 -34.43994 -32.44024 -31.71044 -31.32653 -30.76951 -28.86194 -28.06385 -25.95942 -25.49654 -24.03792 -23.02405 -22.10122 -20.33108 -19.29223 -18.92078 -17.77011 -17.43986 -16.67294 -16.40933 -15.72026 -15.33564 -15.13233 -14.95317 -14.81379 -14.55071 -14.14938 -14.02975 -13.91819 -13.45246 -13.22400 -13.19103 -13.02420 -12.83474 -12.69382 -12.62110 -12.49676 -12.28683 -12.14367 -11.94632 -11.73621 -11.38224 -11.22865 -11.08257 -11.06375 -11.02614 -10.97804 -10.76185 -9.81983 -9.75246 -9.55313 -9.38723 -9.18218 -9.08399 -8.57496 -8.24445 -6.51449 -6.22903 -3.93484 1.01249 2.67821 2.98764 3.02011 3.09196 3.20926 3.26518 3.30969 3.59932 4.14504 4.19879 4.35810 4.37107 4.40341 4.76885 4.80779 4.91442 4.99100 5.02915 5.04293 5.08842 5.09614 5.12470 5.19703 5.26613 5.31786 5.34527 5.40159 5.47487 5.52989 5.60901 5.64740 5.68804 5.81638 5.83965 5.87775 5.93581 6.00670 6.09602 6.12490 6.16772 6.25595 6.28980 6.46806 7.25248 7.58877 7.63198 8.00148 8.34476 8.52930 9.22666 10.84591 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032087 B = 0.001883 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.409514 B =14863.501091 C =15311.855145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.107 4.107 3 C -0.024 4.024 4 C -0.128 4.128 5 C -0.236 4.236 6 C 0.546 3.454 7 O -0.534 6.534 8 N -0.720 5.720 9 C 0.140 3.860 10 H 0.104 0.896 11 C -0.141 4.141 12 C 0.101 3.899 13 N -0.622 5.622 14 C 0.551 3.449 15 O -0.513 6.513 16 C -0.147 4.147 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.133 3.867 27 H 0.082 0.918 28 C -0.172 4.172 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.125 0.875 38 H 0.404 0.596 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.060 0.940 47 H 0.084 0.916 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 -3.669 30.049 30.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.144 4.144 3 C -0.026 4.026 4 C -0.185 4.185 5 C -0.257 4.257 6 C 0.336 3.664 7 O -0.414 6.414 8 N -0.374 5.374 9 C 0.034 3.966 10 H 0.122 0.878 11 C -0.180 4.180 12 C -0.023 4.023 13 N -0.360 5.360 14 C 0.340 3.660 15 O -0.387 6.387 16 C -0.298 4.298 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.028 3.972 27 H 0.100 0.900 28 C -0.230 4.230 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.143 0.857 38 H 0.243 0.757 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.103 0.897 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.181 -2.483 29.478 30.033 hybrid contribution 1.125 -1.688 -0.539 2.099 sum -4.056 -4.170 28.940 29.519 Atomic orbital electron populations 1.21522 0.94145 1.01755 1.01420 1.21060 0.97202 0.92438 1.03687 1.22588 0.89871 0.95708 0.94442 1.21024 1.02716 1.00287 0.94433 1.22338 1.09126 1.02326 0.91909 1.18584 0.79213 0.84352 0.84245 1.90726 1.40018 1.23311 1.87338 1.46167 1.57768 1.28454 1.05027 1.21906 0.99784 0.92639 0.82267 0.87789 1.23192 0.99794 1.00229 0.94828 1.22295 1.02075 0.83522 0.94377 1.48538 1.64797 1.11335 1.11290 1.20020 0.77355 0.87755 0.80869 1.90691 1.51171 1.16696 1.80093 1.23518 1.02923 1.03373 0.99951 1.85385 1.81976 1.15072 1.00937 1.22901 1.47971 0.98186 0.99225 0.90864 1.24994 0.95349 0.96021 0.97222 1.70025 1.45107 1.17395 1.17748 0.86115 0.78723 0.80631 0.80026 1.19602 1.20552 1.20564 1.21539 0.97983 0.92324 0.85350 0.90032 1.22169 0.99459 0.98782 1.02594 0.93781 0.91823 0.92673 0.87747 0.92205 0.90156 0.91079 0.91105 0.85697 0.75729 0.90273 0.89322 0.89933 0.90954 0.89299 0.89237 0.92229 0.92105 0.89738 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 9.45 37.16 0.35 -0.70 16 2 C -0.11 -0.84 5.33 -27.88 -0.15 -0.99 16 3 C -0.02 -0.17 5.36 -101.17 -0.54 -0.71 16 4 C -0.13 -0.55 10.05 36.01 0.36 -0.19 16 5 C -0.24 -1.71 9.63 -37.81 -0.36 -2.07 16 6 C 0.55 5.11 7.61 -12.66 -0.10 5.01 16 7 O -0.53 -6.30 11.40 5.26 0.06 -6.24 16 8 N -0.72 -5.95 4.97 -53.20 -0.26 -6.21 16 9 C 0.14 1.34 3.10 -66.09 -0.21 1.13 16 10 H 0.10 1.08 7.70 -51.93 -0.40 0.68 16 11 C -0.14 -1.29 6.77 -24.59 -0.17 -1.46 16 12 C 0.10 1.09 6.69 -2.54 -0.02 1.07 16 13 N -0.62 -8.70 3.08 -163.02 -0.50 -9.20 16 14 C 0.55 10.37 7.65 -10.98 -0.08 10.29 16 15 O -0.51 -11.44 14.77 5.56 0.08 -11.36 16 16 C -0.15 -2.99 5.16 36.01 0.19 -2.80 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 18 C -0.53 -15.19 9.50 30.94 0.29 -14.90 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.10 13.22 55.49 0.73 -25.36 16 22 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C 0.13 1.54 3.48 -66.95 -0.23 1.31 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 28 C -0.17 -1.86 7.95 37.15 0.30 -1.57 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.63 6.91 -51.93 -0.36 0.27 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.10 1.05 5.57 -51.93 -0.29 0.76 16 33 H 0.06 0.39 8.06 -51.93 -0.42 -0.03 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.26 8.06 -51.93 -0.42 -0.16 16 36 H 0.07 0.25 8.06 -51.93 -0.42 -0.17 16 37 H 0.13 0.63 8.04 -52.49 -0.42 0.21 16 38 H 0.40 2.70 5.71 -40.82 -0.23 2.47 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.87 7.48 -51.93 -0.39 0.48 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.67 7.85 -51.92 -0.41 1.27 16 44 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 47 H 0.08 1.20 6.77 -51.93 -0.35 0.85 16 48 H 0.06 0.51 6.67 -51.93 -0.35 0.16 16 LS Contribution 398.29 15.07 6.00 6.00 Total: -1.00 -34.54 398.29 -9.39 -43.93 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.80 Total: 0.53 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -0.46 Total: -4.59 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: -0.03 Total: -40.78 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.14 Total: -17.60 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.54 -9.39 -43.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511142162.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.671 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds