Wall clock time and date at job start Sat Apr 11 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47504 * 2 1 4 4 C 1.50689 * 120.00125 * 272.75301 * 3 2 1 5 5 C 1.33000 * 119.99457 * 92.74510 * 3 2 1 6 6 C 1.47092 * 120.00575 * 352.07068 * 5 3 2 7 7 O 1.21618 * 120.00188 * 353.61082 * 6 5 3 8 8 N 1.34774 * 120.00020 * 173.33593 * 6 5 3 9 9 C 1.47425 * 125.65198 * 359.96892 * 8 6 5 10 10 C 1.54693 * 104.94275 * 204.07323 * 9 8 6 11 11 C 1.55155 * 101.67573 * 323.27311 * 10 9 8 12 12 H 1.08995 * 110.72209 * 276.97148 * 11 10 9 13 13 N 1.46500 * 110.86925 * 153.76963 * 11 10 9 14 14 C 1.34774 * 119.99843 * 91.39405 * 13 11 10 15 15 O 1.21284 * 119.99986 * 359.97438 * 14 13 11 16 16 C 1.50702 * 120.00121 * 179.97438 * 14 13 11 17 17 S 1.81003 * 109.47056 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99750 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00095 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99912 * 179.97438 * 18 17 16 21 21 N 1.31633 * 119.99893 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00197 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47167 * 89.99563 * 22 20 18 24 24 H 1.48500 * 109.47221 * 209.99765 * 22 20 18 25 25 H 1.48508 * 109.46938 * 330.00004 * 22 20 18 26 26 C 1.47025 * 125.64775 * 180.27399 * 8 6 5 27 27 H 1.09003 * 109.88189 * 59.48744 * 26 8 6 28 28 C 1.52998 * 109.88535 * 298.32434 * 26 8 6 29 29 H 1.08997 * 109.47221 * 299.99759 * 1 2 3 30 30 H 1.09005 * 109.46651 * 60.00188 * 1 2 3 31 31 H 1.08997 * 109.47394 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47352 * 239.99702 * 2 1 3 33 33 H 1.09008 * 109.47112 * 120.00041 * 2 1 3 34 34 H 1.08996 * 109.47473 * 269.99867 * 4 3 2 35 35 H 1.09006 * 109.47531 * 29.99514 * 4 3 2 36 36 H 1.09000 * 109.47416 * 149.99807 * 4 3 2 37 37 H 1.08001 * 119.99234 * 172.06615 * 5 3 2 38 38 H 1.08995 * 110.36152 * 323.00205 * 9 8 6 39 39 H 1.08994 * 110.36433 * 85.32412 * 9 8 6 40 40 H 1.08996 * 111.09957 * 205.10860 * 10 9 8 41 41 H 1.08993 * 110.84912 * 81.33251 * 10 9 8 42 42 H 0.96995 * 120.00286 * 271.38849 * 13 11 10 43 43 H 1.08998 * 109.47018 * 300.00026 * 16 14 13 44 44 H 1.09004 * 109.47019 * 59.99966 * 16 14 13 45 45 H 0.97006 * 119.99924 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.47303 * 61.45262 * 28 26 8 47 47 H 1.09001 * 109.47800 * 181.45367 * 28 26 8 48 48 H 1.09007 * 109.46973 * 301.45147 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2245 2.1520 -1.3035 5 6 2.3061 2.0292 1.1506 6 6 1.9562 1.3841 2.4253 7 8 1.3140 0.3513 2.4280 8 7 2.3520 1.9345 3.5901 9 6 3.1370 3.1743 3.7317 10 6 3.8372 3.0483 5.1053 11 6 2.7457 2.3401 5.9504 12 1 2.0262 3.0629 6.3349 13 7 3.3476 1.5773 7.0468 14 6 3.5262 2.1552 8.2512 15 8 3.1890 3.3068 8.4272 16 6 4.1448 1.3704 9.3792 17 16 4.2498 2.4145 10.8541 18 6 4.9882 1.2788 11.9809 19 1 5.2289 0.2768 11.6577 20 6 5.2616 1.6723 13.2836 21 7 5.8127 0.8238 14.1255 22 14 4.8459 3.4056 13.8424 23 1 3.4649 3.4322 14.3877 24 1 5.8026 3.8287 14.8964 25 1 4.9397 4.3340 12.6871 26 6 2.0777 1.3946 4.9298 27 1 2.5001 0.3938 5.0198 28 6 0.5679 1.3490 5.1735 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2385 1.9862 -1.6672 35 1 1.5099 1.7799 -2.0377 36 1 2.0641 3.2190 -1.1487 37 1 2.7854 2.9971 1.1488 38 1 3.8761 3.2484 2.9340 39 1 2.4790 4.0431 3.7222 40 1 4.0741 4.0295 5.5165 41 1 4.7331 2.4323 5.0290 42 1 3.6175 0.6563 6.9060 43 1 3.5291 0.4972 9.5948 44 1 5.1453 1.0473 9.0912 45 1 6.0041 1.0989 15.0358 46 1 0.1014 0.6900 4.4412 47 1 0.3730 0.9722 6.1775 48 1 0.1536 2.3525 5.0752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001511166036.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:26 Heat of formation + Delta-G solvation = -81.488646 kcal Electronic energy + Delta-G solvation = -26961.946294 eV Core-core repulsion = 23142.370199 eV Total energy + Delta-G solvation = -3819.576095 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.64317 -40.58093 -38.96718 -36.69787 -35.34991 -34.66489 -32.80643 -32.29283 -31.59390 -30.37631 -28.67982 -27.85951 -26.41314 -24.89020 -23.86274 -22.66748 -21.79772 -20.77195 -19.82697 -18.96958 -18.39420 -17.97704 -17.37941 -17.07048 -16.76709 -16.44936 -16.22775 -15.86752 -15.70104 -15.00856 -14.94987 -14.78781 -14.75615 -14.58488 -14.28970 -13.94844 -13.73905 -13.63052 -13.58794 -13.35518 -13.32899 -13.13248 -13.03103 -12.98352 -12.83733 -12.64021 -12.60411 -12.27195 -11.98956 -11.87808 -11.83599 -11.70565 -11.16595 -11.03827 -10.53476 -10.47178 -10.17512 -10.06841 -9.57516 -8.98573 -8.50968 -6.21690 0.41482 0.98151 1.32330 1.45898 1.52353 1.54459 1.85137 2.24821 2.28590 2.34252 2.71942 2.87341 3.24807 3.50521 3.79360 3.81974 3.85185 3.92352 4.13218 4.16049 4.22503 4.23724 4.28413 4.47277 4.48122 4.53016 4.54153 4.66391 4.66809 4.68717 4.73817 4.84862 4.86919 4.96810 5.01522 5.06088 5.09252 5.15376 5.23235 5.35412 5.40392 5.45393 5.54272 5.71064 5.71995 6.12134 6.38877 6.55030 6.94104 7.14272 7.22025 8.61365 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033325 B = 0.001876 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.011526 B =14918.598719 C =15197.338349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.109 4.109 3 C -0.021 4.021 4 C -0.125 4.125 5 C -0.244 4.244 6 C 0.554 3.446 7 O -0.563 6.563 8 N -0.613 5.613 9 C 0.105 3.895 10 C -0.142 4.142 11 C 0.140 3.860 12 H 0.094 0.906 13 N -0.705 5.705 14 C 0.543 3.457 15 O -0.555 6.555 16 C -0.113 4.113 17 S -0.171 6.171 18 C -0.530 4.530 19 H 0.061 0.939 20 C 0.044 3.956 21 N -0.917 5.917 22 Si 0.915 3.085 23 H -0.263 1.263 24 H -0.260 1.260 25 H -0.235 1.235 26 C 0.137 3.863 27 H 0.079 0.921 28 C -0.155 4.155 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.149 0.851 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.416 0.584 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.277 0.723 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.935 3.354 -33.883 34.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C -0.023 4.023 4 C -0.181 4.181 5 C -0.264 4.264 6 C 0.348 3.652 7 O -0.445 6.445 8 N -0.347 5.347 9 C -0.018 4.018 10 C -0.181 4.181 11 C 0.034 3.966 12 H 0.112 0.888 13 N -0.358 5.358 14 C 0.329 3.671 15 O -0.432 6.432 16 C -0.264 4.264 17 S 0.056 5.944 18 C -0.678 4.678 19 H 0.080 0.920 20 C -0.161 4.161 21 N -0.555 5.555 22 Si 0.737 3.263 23 H -0.188 1.188 24 H -0.184 1.184 25 H -0.158 1.158 26 C 0.033 3.967 27 H 0.097 0.903 28 C -0.213 4.213 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.167 0.833 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.253 0.747 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.786 4.641 -33.483 34.688 hybrid contribution 0.548 -1.591 0.915 1.915 sum -7.237 3.050 -32.569 33.502 Atomic orbital electron populations 1.21463 0.94374 1.01533 1.01033 1.20998 0.97004 0.93495 1.03121 1.22845 0.88621 0.95121 0.95667 1.21055 1.03809 1.00357 0.92917 1.22421 1.09899 1.03637 0.90457 1.18721 0.78972 0.83632 0.83905 1.90723 1.41596 1.25014 1.87160 1.48448 1.54839 1.26722 1.04647 1.22436 0.95006 0.86469 0.97846 1.23167 0.98128 1.02481 0.94287 1.21978 0.95639 0.93229 0.85737 0.88778 1.45648 1.63488 1.17157 1.09537 1.19861 0.77482 0.86573 0.83209 1.90695 1.50918 1.18743 1.82883 1.23278 1.05555 1.02352 0.95227 1.84664 1.81606 1.21447 1.06730 1.22478 1.46375 1.00188 0.98734 0.92035 1.25586 0.93369 1.01578 0.95563 1.70024 1.42068 1.37119 1.06313 0.85855 0.79369 0.80524 0.80543 1.18784 1.18424 1.15836 1.21527 0.96003 0.97220 0.81967 0.90277 1.22048 0.94668 1.02379 1.02208 0.94126 0.92072 0.92870 0.90564 0.90477 0.89058 0.90075 0.89939 0.83310 0.87733 0.89797 0.89200 0.89553 0.74700 0.86964 0.86720 0.91405 0.92297 0.91389 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.45 71.98 0.68 -1.34 16 2 C -0.11 -1.68 5.31 29.85 0.16 -1.52 16 3 C -0.02 -0.25 5.36 -17.62 -0.09 -0.35 16 4 C -0.13 -0.71 10.04 71.23 0.72 0.00 16 5 C -0.24 -3.29 9.01 23.43 0.21 -3.08 16 6 C 0.55 10.78 7.43 86.57 0.64 11.42 16 7 O -0.56 -14.21 10.72 -4.09 -0.04 -14.25 16 8 N -0.61 -10.35 3.07 -792.73 -2.43 -12.78 16 9 C 0.10 1.23 6.48 86.78 0.56 1.79 16 10 C -0.14 -2.17 6.76 31.91 0.22 -1.96 16 11 C 0.14 2.73 2.84 46.18 0.13 2.86 16 12 H 0.09 2.20 7.26 -2.39 -0.02 2.18 16 13 N -0.70 -15.46 5.18 -436.92 -2.26 -17.72 16 14 C 0.54 17.35 7.85 87.66 0.69 18.04 16 15 O -0.55 -22.01 15.51 -3.04 -0.05 -22.06 16 16 C -0.11 -4.08 6.16 71.24 0.44 -3.64 16 17 S -0.17 -8.43 18.55 -56.49 -1.05 -9.47 16 18 C -0.53 -30.55 10.04 67.95 0.68 -29.86 16 19 H 0.06 3.75 8.03 -2.91 -0.02 3.72 16 20 C 0.04 2.59 5.50 84.86 0.47 3.05 16 21 N -0.92 -55.64 13.97 21.65 0.30 -55.34 16 22 Si 0.92 44.54 27.74 68.60 1.90 46.45 16 23 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.23 -11.31 6.74 99.48 0.67 -10.64 16 26 C 0.14 2.54 3.21 45.34 0.15 2.68 16 27 H 0.08 1.50 7.72 -2.39 -0.02 1.48 16 28 C -0.15 -3.11 9.10 71.98 0.66 -2.45 16 29 H 0.04 0.83 6.91 -2.39 -0.02 0.82 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.08 1.63 5.57 -2.38 -0.01 1.62 16 34 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.08 0.37 8.12 -2.38 -0.02 0.35 16 36 H 0.08 0.33 8.07 -2.39 -0.02 0.31 16 37 H 0.15 1.22 6.98 -2.91 -0.02 1.20 16 38 H 0.10 0.77 7.24 -2.39 -0.02 0.76 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.42 6.93 8.37 -92.71 -0.78 6.15 16 43 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 44 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 45 H 0.28 15.51 8.31 -92.70 -0.77 14.74 16 46 H 0.06 1.36 6.88 -2.39 -0.02 1.34 16 47 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -75.06 399.24 2.81 -72.24 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.14 Total: 17.29 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 6.30 Total: -4.36 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -4.39 Total: -85.84 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.09 Total: -36.31 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.90 Total: 46.45 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.05 Total: -9.47 kcal Total: -75.06 2.81 -72.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511166036.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.244 kcal (2) G-P(sol) polarization free energy of solvation -75.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds