Wall clock time and date at job start Sat Apr 11 2020 06:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47410 * 2 1 4 4 C 1.50705 * 119.99768 * 274.99806 * 3 2 1 5 5 C 1.32992 * 120.00057 * 95.00066 * 3 2 1 6 6 C 1.47107 * 120.00039 * 172.84140 * 5 3 2 7 7 O 1.21617 * 119.99725 * 353.99734 * 6 5 3 8 8 N 1.34771 * 120.00081 * 173.99199 * 6 5 3 9 9 C 1.47423 * 125.65009 * 359.96863 * 8 6 5 10 10 C 1.54906 * 104.83383 * 204.16020 * 9 8 6 11 11 C 1.55165 * 101.58024 * 322.98350 * 10 9 8 12 12 H 1.08999 * 110.72170 * 277.14194 * 11 10 9 13 13 N 1.46503 * 110.72009 * 153.86409 * 11 10 9 14 14 C 1.34777 * 119.99865 * 91.48048 * 13 11 10 15 15 O 1.21282 * 119.99924 * 0.02562 * 14 13 11 16 16 C 1.50696 * 119.99998 * 180.02562 * 14 13 11 17 17 S 1.80998 * 109.47287 * 180.02562 * 16 14 13 18 18 C 1.76192 * 100.00267 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00128 * 359.97438 * 18 17 16 20 20 C 1.38802 * 120.00073 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99982 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99737 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47612 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47234 * 119.99756 * 22 20 18 25 25 H 1.48500 * 109.46784 * 239.99479 * 22 20 18 26 26 C 1.47027 * 125.64865 * 179.97438 * 8 6 5 27 27 H 1.09002 * 109.88435 * 298.33157 * 26 8 6 28 28 C 1.52995 * 109.87887 * 59.34064 * 26 8 6 29 29 H 1.09000 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46790 * 300.00144 * 1 2 3 31 31 H 1.08997 * 109.46629 * 59.99765 * 1 2 3 32 32 H 1.09003 * 109.46778 * 239.99474 * 2 1 3 33 33 H 1.09004 * 109.47208 * 120.00009 * 2 1 3 34 34 H 1.09001 * 109.47354 * 264.38955 * 4 3 2 35 35 H 1.08996 * 109.47175 * 24.39106 * 4 3 2 36 36 H 1.09008 * 109.46714 * 144.39029 * 4 3 2 37 37 H 1.07996 * 120.00092 * 352.83847 * 5 3 2 38 38 H 1.09010 * 110.36260 * 322.99244 * 9 8 6 39 39 H 1.09003 * 110.37207 * 85.20565 * 9 8 6 40 40 H 1.08998 * 111.00786 * 81.06156 * 10 9 8 41 41 H 1.09003 * 111.00868 * 204.91515 * 10 9 8 42 42 H 0.97001 * 119.99538 * 271.48403 * 13 11 10 43 43 H 1.09004 * 109.46873 * 299.99939 * 16 14 13 44 44 H 1.09000 * 109.47327 * 60.00020 * 16 14 13 45 45 H 0.96999 * 119.99922 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.47624 * 58.28032 * 28 26 8 47 47 H 1.08998 * 109.47034 * 178.28559 * 28 26 8 48 48 H 1.08999 * 109.47244 * 298.28138 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.1764 2.1690 -1.3002 5 6 2.3488 2.0142 1.1474 6 6 2.9858 3.3401 1.1385 7 8 3.3226 3.8459 0.0849 8 7 3.1962 3.9945 2.2977 9 6 2.8386 3.5010 3.6401 10 6 2.6919 4.7771 4.5058 11 6 3.8238 5.6722 3.9354 12 1 4.7819 5.4181 4.3888 13 7 3.5139 7.0901 4.1353 14 6 3.9392 7.7226 5.2468 15 8 4.5790 7.1181 6.0813 16 6 3.6200 9.1809 5.4528 17 16 4.3234 9.7363 7.0253 18 6 3.8147 11.4231 7.0093 19 1 3.2423 11.8067 6.1775 20 6 4.1503 12.2593 8.0651 21 7 4.8483 11.7920 9.0785 22 14 3.6103 14.0474 8.0484 23 1 2.8431 14.3214 6.8068 24 1 2.7525 14.3165 9.2303 25 1 4.8065 14.9262 8.0946 26 6 3.8202 5.3189 2.4331 27 1 4.8428 5.2870 2.0572 28 6 3.0114 6.3572 1.6532 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.2048 2.0904 -1.6528 35 1 1.5039 1.7398 -2.0428 36 1 1.9246 3.2183 -1.1453 37 1 2.1379 1.5227 2.0856 38 1 1.8952 2.9559 3.6050 39 1 3.6301 2.8628 4.0331 40 1 1.7160 5.2396 4.3578 41 1 2.8621 4.5563 5.5595 42 1 3.0025 7.5735 3.4677 43 1 4.0472 9.7650 4.6376 44 1 2.5387 9.3173 5.4697 45 1 5.0825 12.3762 9.8165 46 1 1.9872 6.3748 2.0257 47 1 3.4622 7.3411 1.7829 48 1 3.0086 6.0956 0.5951 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001511166039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:38 Heat of formation + Delta-G solvation = -57.440124 kcal Electronic energy + Delta-G solvation = -26831.266144 eV Core-core repulsion = 23012.732871 eV Total energy + Delta-G solvation = -3818.533273 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.81748 -39.37368 -37.92800 -36.33038 -34.30426 -32.44432 -31.75007 -31.33049 -30.91352 -28.97804 -27.77160 -25.94397 -25.45738 -24.67380 -23.21816 -21.65120 -20.37056 -19.59759 -18.46443 -17.94136 -17.50310 -16.66910 -16.28738 -15.74536 -15.55037 -15.16784 -14.85261 -14.81719 -14.70806 -14.48765 -13.95946 -13.79574 -13.53712 -13.32012 -13.25010 -13.01468 -12.83099 -12.67410 -12.56663 -12.46986 -12.31384 -12.17308 -11.94324 -11.81073 -11.69237 -11.37827 -11.20761 -11.08031 -11.04003 -10.98451 -10.76689 -9.82946 -9.75514 -9.52379 -9.46171 -9.09541 -8.99028 -8.83895 -8.25549 -6.51846 -6.23434 -3.93949 1.02953 2.59496 2.99620 3.01740 3.06547 3.20676 3.27698 3.32405 3.68625 4.03345 4.18850 4.27154 4.34396 4.41076 4.70790 4.77286 4.78891 4.82347 4.85634 4.98163 5.06290 5.09416 5.11998 5.13167 5.24747 5.27795 5.32322 5.40227 5.42688 5.46396 5.50522 5.62214 5.68202 5.71868 5.72896 5.80560 5.86003 5.89015 5.98748 6.11421 6.13235 6.17275 6.23656 6.56071 7.26928 7.58488 7.62979 7.96604 8.33959 8.54568 9.22278 10.84047 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032213 B = 0.001791 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.996861 B =15633.678874 C =15925.840878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.026 4.026 4 C -0.124 4.124 5 C -0.231 4.231 6 C 0.563 3.437 7 O -0.538 6.538 8 N -0.612 5.612 9 C 0.101 3.899 10 C -0.145 4.145 11 C 0.141 3.859 12 H 0.107 0.893 13 N -0.731 5.731 14 C 0.534 3.466 15 O -0.515 6.515 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.131 3.869 27 H 0.083 0.917 28 C -0.171 4.171 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.402 0.598 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.717 -22.901 -18.608 30.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.135 4.135 3 C -0.028 4.028 4 C -0.180 4.180 5 C -0.252 4.252 6 C 0.356 3.644 7 O -0.418 6.418 8 N -0.346 5.346 9 C -0.023 4.023 10 C -0.185 4.185 11 C 0.034 3.966 12 H 0.125 0.875 13 N -0.388 5.388 14 C 0.320 3.680 15 O -0.389 6.389 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.027 3.973 27 H 0.101 0.899 28 C -0.229 4.229 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.143 0.857 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.239 0.761 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.389 -23.622 -17.659 30.405 hybrid contribution -1.336 2.019 -1.029 2.631 sum -8.725 -21.603 -18.687 29.867 Atomic orbital electron populations 1.21726 0.94123 1.02155 1.02494 1.20782 0.96747 0.92552 1.03428 1.22576 0.90015 0.94763 0.95441 1.21151 1.02339 1.01254 0.93301 1.22339 1.07635 0.96280 0.98937 1.18195 0.79038 0.85177 0.81975 1.90754 1.52154 1.69107 1.29761 1.48398 1.61020 1.18772 1.06403 1.22366 1.00993 0.97041 0.81854 1.23251 0.99849 0.94836 1.00531 1.21821 0.99762 0.81741 0.93265 0.87500 1.46204 1.58683 1.10174 1.23740 1.20353 0.78192 0.88796 0.80611 1.90700 1.38099 1.67518 1.42600 1.23538 1.05296 0.94053 1.07598 1.85385 1.71123 1.10230 1.16505 1.22913 1.40807 0.95332 1.09333 0.90854 1.24992 0.94706 0.99310 0.94567 1.70024 1.35856 1.36146 1.08243 0.86116 0.78454 0.82715 0.78207 1.19618 1.20562 1.20558 1.21647 0.97623 0.82986 0.95038 0.89878 1.22151 1.00036 0.98548 1.02140 0.92035 0.92344 0.92301 0.90262 0.90631 0.90269 0.92697 0.89231 0.85679 0.90245 0.90789 0.90110 0.88860 0.76081 0.89147 0.89171 0.92224 0.92137 0.91033 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.90 37.16 0.37 -0.28 16 2 C -0.10 -0.49 6.08 -27.88 -0.17 -0.65 16 3 C -0.03 -0.19 5.36 -101.17 -0.54 -0.73 16 4 C -0.12 -1.01 8.48 36.01 0.31 -0.71 16 5 C -0.23 -1.88 9.00 -37.80 -0.34 -2.22 16 6 C 0.56 6.05 7.43 -12.67 -0.09 5.96 16 7 O -0.54 -7.12 12.16 5.26 0.06 -7.06 16 8 N -0.61 -5.94 3.08 -164.39 -0.51 -6.44 16 9 C 0.10 0.77 6.49 -2.53 -0.02 0.75 16 10 C -0.15 -1.37 6.77 -24.58 -0.17 -1.53 16 11 C 0.14 1.58 3.19 -66.09 -0.21 1.37 16 12 H 0.11 1.37 7.55 -51.93 -0.39 0.97 16 13 N -0.73 -9.31 4.89 -52.03 -0.25 -9.57 16 14 C 0.53 9.50 7.85 -10.99 -0.09 9.42 16 15 O -0.52 -11.12 15.51 5.56 0.09 -11.03 16 16 C -0.15 -3.03 6.16 36.00 0.22 -2.80 16 17 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 18 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 19 H 0.07 1.96 7.80 -52.48 -0.41 1.56 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 22 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.13 1.35 3.47 -66.95 -0.23 1.12 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 28 C -0.17 -1.67 7.93 37.15 0.29 -1.37 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.33 8.03 -51.93 -0.42 -0.09 16 34 H 0.08 0.70 8.04 -51.93 -0.42 0.28 16 35 H 0.05 0.34 8.09 -51.93 -0.42 -0.08 16 36 H 0.09 0.91 6.14 -51.92 -0.32 0.59 16 37 H 0.13 0.77 6.97 -52.49 -0.37 0.41 16 38 H 0.08 0.47 7.23 -51.92 -0.38 0.10 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.40 4.22 5.88 -40.82 -0.24 3.98 16 43 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 44 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.06 0.56 8.02 -51.93 -0.42 0.14 16 47 H 0.07 0.64 6.81 -51.93 -0.35 0.29 16 48 H 0.08 0.87 6.73 -51.93 -0.35 0.52 16 LS Contribution 400.43 15.07 6.03 6.03 Total: -1.00 -34.59 400.43 -9.39 -43.98 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.84 Total: 1.38 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -0.47 Total: -4.53 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: -0.03 Total: -41.24 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.15 Total: -18.09 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.59 -9.39 -43.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511166039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.464 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds