Wall clock time and date at job start Sat Apr 11 2020 06:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47410 * 2 1 4 4 C 1.50705 * 119.99768 * 274.99806 * 3 2 1 5 5 C 1.32992 * 120.00057 * 95.00066 * 3 2 1 6 6 C 1.47107 * 120.00039 * 172.84140 * 5 3 2 7 7 O 1.21617 * 119.99725 * 353.99734 * 6 5 3 8 8 N 1.34771 * 120.00081 * 173.99199 * 6 5 3 9 9 C 1.47423 * 125.65009 * 359.96863 * 8 6 5 10 10 C 1.54906 * 104.83383 * 204.16020 * 9 8 6 11 11 C 1.55165 * 101.58024 * 322.98350 * 10 9 8 12 12 H 1.08999 * 110.72170 * 277.14194 * 11 10 9 13 13 N 1.46503 * 110.72009 * 153.86409 * 11 10 9 14 14 C 1.34777 * 119.99865 * 91.48048 * 13 11 10 15 15 O 1.21282 * 119.99924 * 0.02562 * 14 13 11 16 16 C 1.50696 * 119.99998 * 180.02562 * 14 13 11 17 17 S 1.80998 * 109.47287 * 180.02562 * 16 14 13 18 18 C 1.76192 * 100.00267 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00128 * 359.97438 * 18 17 16 20 20 C 1.38802 * 120.00073 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99982 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99737 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47612 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47234 * 119.99756 * 22 20 18 25 25 H 1.48500 * 109.46784 * 239.99479 * 22 20 18 26 26 C 1.47027 * 125.64865 * 179.97438 * 8 6 5 27 27 H 1.09002 * 109.88435 * 298.33157 * 26 8 6 28 28 C 1.52995 * 109.87887 * 59.34064 * 26 8 6 29 29 H 1.09000 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46790 * 300.00144 * 1 2 3 31 31 H 1.08997 * 109.46629 * 59.99765 * 1 2 3 32 32 H 1.09003 * 109.46778 * 239.99474 * 2 1 3 33 33 H 1.09004 * 109.47208 * 120.00009 * 2 1 3 34 34 H 1.09001 * 109.47354 * 264.38955 * 4 3 2 35 35 H 1.08996 * 109.47175 * 24.39106 * 4 3 2 36 36 H 1.09008 * 109.46714 * 144.39029 * 4 3 2 37 37 H 1.07996 * 120.00092 * 352.83847 * 5 3 2 38 38 H 1.09010 * 110.36260 * 322.99244 * 9 8 6 39 39 H 1.09003 * 110.37207 * 85.20565 * 9 8 6 40 40 H 1.08998 * 111.00786 * 81.06156 * 10 9 8 41 41 H 1.09003 * 111.00868 * 204.91515 * 10 9 8 42 42 H 0.97001 * 119.99538 * 271.48403 * 13 11 10 43 43 H 1.09004 * 109.46873 * 299.99939 * 16 14 13 44 44 H 1.09000 * 109.47327 * 60.00020 * 16 14 13 45 45 H 0.96999 * 119.99922 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.47624 * 58.28032 * 28 26 8 47 47 H 1.08998 * 109.47034 * 178.28559 * 28 26 8 48 48 H 1.08999 * 109.47244 * 298.28138 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.1764 2.1690 -1.3002 5 6 2.3488 2.0142 1.1474 6 6 2.9858 3.3401 1.1385 7 8 3.3226 3.8459 0.0849 8 7 3.1962 3.9945 2.2977 9 6 2.8386 3.5010 3.6401 10 6 2.6919 4.7771 4.5058 11 6 3.8238 5.6722 3.9354 12 1 4.7819 5.4181 4.3888 13 7 3.5139 7.0901 4.1353 14 6 3.9392 7.7226 5.2468 15 8 4.5790 7.1181 6.0813 16 6 3.6200 9.1809 5.4528 17 16 4.3234 9.7363 7.0253 18 6 3.8147 11.4231 7.0093 19 1 3.2423 11.8067 6.1775 20 6 4.1503 12.2593 8.0651 21 7 4.8483 11.7920 9.0785 22 14 3.6103 14.0474 8.0484 23 1 2.8431 14.3214 6.8068 24 1 2.7525 14.3165 9.2303 25 1 4.8065 14.9262 8.0946 26 6 3.8202 5.3189 2.4331 27 1 4.8428 5.2870 2.0572 28 6 3.0114 6.3572 1.6532 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.2048 2.0904 -1.6528 35 1 1.5039 1.7398 -2.0428 36 1 1.9246 3.2183 -1.1453 37 1 2.1379 1.5227 2.0856 38 1 1.8952 2.9559 3.6050 39 1 3.6301 2.8628 4.0331 40 1 1.7160 5.2396 4.3578 41 1 2.8621 4.5563 5.5595 42 1 3.0025 7.5735 3.4677 43 1 4.0472 9.7650 4.6376 44 1 2.5387 9.3173 5.4697 45 1 5.0825 12.3762 9.8165 46 1 1.9872 6.3748 2.0257 47 1 3.4622 7.3411 1.7829 48 1 3.0086 6.0956 0.5951 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001511166039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:35 Heat of formation + Delta-G solvation = -79.179393 kcal Electronic energy + Delta-G solvation = -26832.208830 eV Core-core repulsion = 23012.732871 eV Total energy + Delta-G solvation = -3819.475958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -41.71045 -40.53174 -38.92052 -36.94355 -35.42944 -34.58003 -32.56563 -32.23765 -31.60321 -30.28242 -28.48875 -27.67791 -26.74382 -25.21820 -23.89510 -22.66322 -21.44095 -20.47649 -19.88528 -19.09771 -18.33093 -17.96089 -17.39396 -16.87687 -16.63342 -16.42471 -16.38645 -15.80838 -15.73141 -15.32425 -15.01926 -14.85421 -14.57164 -14.44406 -14.14277 -14.03364 -13.79600 -13.60476 -13.43415 -13.27244 -13.16201 -13.06242 -12.98844 -12.91747 -12.88083 -12.59970 -12.42988 -12.24540 -12.09985 -11.85263 -11.73935 -11.69353 -11.15520 -10.97628 -10.55690 -10.26753 -10.17182 -10.14174 -9.60748 -8.65411 -8.34653 -6.11948 0.39272 1.25859 1.41422 1.45855 1.56914 1.58609 1.86166 2.25436 2.27382 2.36140 2.99789 3.23748 3.32373 3.51558 3.69463 3.88031 3.90664 3.96031 4.08830 4.17371 4.24134 4.27406 4.31668 4.34206 4.43901 4.50330 4.51672 4.64623 4.65955 4.68777 4.76497 4.83908 4.87972 4.97803 5.01700 5.05647 5.09649 5.12075 5.22102 5.34411 5.37965 5.42800 5.43402 5.57790 5.64362 6.20468 6.41817 6.52796 7.07240 7.17500 7.20172 8.74703 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032213 B = 0.001791 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.996861 B =15633.678874 C =15925.840878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.020 4.020 4 C -0.123 4.123 5 C -0.241 4.241 6 C 0.555 3.445 7 O -0.572 6.572 8 N -0.612 5.612 9 C 0.105 3.895 10 C -0.140 4.140 11 C 0.139 3.861 12 H 0.090 0.910 13 N -0.706 5.706 14 C 0.539 3.461 15 O -0.559 6.559 16 C -0.132 4.132 17 S -0.146 6.146 18 C -0.547 4.547 19 H 0.082 0.918 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.275 1.275 26 C 0.135 3.865 27 H 0.071 0.929 28 C -0.165 4.165 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.149 0.851 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.415 0.585 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.271 0.729 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.700 -23.636 -19.882 32.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.022 4.022 4 C -0.179 4.179 5 C -0.262 4.262 6 C 0.349 3.651 7 O -0.454 6.454 8 N -0.345 5.345 9 C -0.018 4.018 10 C -0.179 4.179 11 C 0.033 3.967 12 H 0.109 0.891 13 N -0.363 5.363 14 C 0.325 3.675 15 O -0.436 6.436 16 C -0.283 4.283 17 S 0.081 5.919 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.200 1.200 26 C 0.031 3.969 27 H 0.089 0.911 28 C -0.223 4.223 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.167 0.833 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.256 0.744 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.403 -24.381 -18.969 32.290 hybrid contribution -0.724 2.144 -0.763 2.388 sum -10.127 -22.237 -19.732 31.406 Atomic orbital electron populations 1.21725 0.93544 1.02895 1.02226 1.20828 0.97082 0.90785 1.04473 1.22818 0.88935 0.95815 0.94670 1.21082 1.02041 1.00259 0.94538 1.22422 1.08276 0.95160 1.00293 1.18712 0.78804 0.85977 0.81588 1.90744 1.53680 1.70047 1.30928 1.48447 1.60607 1.18399 1.07091 1.22483 1.02749 0.96328 0.80214 1.23196 0.99024 0.95195 1.00464 1.21878 1.00030 0.80743 0.94061 0.89146 1.45930 1.57252 1.10899 1.22205 1.20020 0.78019 0.88058 0.81366 1.90693 1.40350 1.68091 1.44468 1.23387 1.05963 0.95437 1.03550 1.85536 1.72826 1.11179 1.22355 1.23250 1.40809 0.95600 1.09799 0.89950 1.26098 0.94515 1.04476 0.93973 1.70180 1.37267 1.38107 1.09154 0.84924 0.78179 0.76163 0.78800 1.18109 1.19905 1.20018 1.21510 0.97392 0.83936 0.94105 0.91059 1.22087 1.00474 0.98633 1.01109 0.90801 0.92570 0.92658 0.89390 0.89467 0.91392 0.90879 0.91501 0.83339 0.87683 0.89675 0.89505 0.89392 0.74420 0.87318 0.87100 0.91998 0.91236 0.90256 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.90 71.98 0.71 -0.21 16 2 C -0.09 -0.69 6.08 29.85 0.18 -0.51 16 3 C -0.02 -0.27 5.36 -17.62 -0.09 -0.36 16 4 C -0.12 -1.93 8.48 71.24 0.60 -1.33 16 5 C -0.24 -3.47 9.00 23.43 0.21 -3.26 16 6 C 0.56 11.44 7.43 86.57 0.64 12.09 16 7 O -0.57 -15.29 12.16 -4.09 -0.05 -15.34 16 8 N -0.61 -11.08 3.08 -792.26 -2.44 -13.52 16 9 C 0.10 1.36 6.49 86.85 0.56 1.92 16 10 C -0.14 -2.39 6.77 31.99 0.22 -2.17 16 11 C 0.14 3.00 3.19 46.18 0.15 3.15 16 12 H 0.09 2.33 7.55 -2.39 -0.02 2.31 16 13 N -0.71 -17.08 4.89 -436.90 -2.14 -19.22 16 14 C 0.54 18.93 7.85 87.66 0.69 19.62 16 15 O -0.56 -24.52 15.51 -3.03 -0.05 -24.57 16 16 C -0.13 -5.08 6.16 71.23 0.44 -4.64 16 17 S -0.15 -7.97 20.57 -56.49 -1.16 -9.13 16 18 C -0.55 -30.91 9.50 67.96 0.65 -30.27 16 19 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 20 C 0.01 0.80 5.49 84.86 0.47 1.27 16 21 N -0.91 -55.50 13.22 21.65 0.29 -55.22 16 22 Si 1.00 43.36 29.55 68.60 2.03 45.39 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 C 0.14 2.69 3.47 45.34 0.16 2.85 16 27 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 28 C -0.16 -3.05 7.93 71.98 0.57 -2.47 16 29 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.09 0.47 8.03 -2.38 -0.02 0.46 16 34 H 0.07 1.22 8.04 -2.39 -0.02 1.20 16 35 H 0.07 0.83 8.09 -2.39 -0.02 0.82 16 36 H 0.07 1.38 6.14 -2.38 -0.01 1.37 16 37 H 0.15 1.37 6.97 -2.91 -0.02 1.35 16 38 H 0.10 0.89 7.23 -2.38 -0.02 0.87 16 39 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 42 H 0.42 7.84 5.88 -92.71 -0.55 7.30 16 43 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 44 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 45 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 46 H 0.07 1.15 8.02 -2.39 -0.02 1.13 16 47 H 0.08 1.31 6.81 -2.39 -0.02 1.29 16 48 H 0.06 1.41 6.73 -2.39 -0.02 1.39 16 Total: -1.00 -77.57 400.43 3.03 -74.53 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.41 Total: 21.42 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 6.15 Total: -4.34 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -4.29 Total: -87.96 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.10 Total: -39.91 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.13 kcal Total: -77.57 3.03 -74.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511166039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.646 kcal (2) G-P(sol) polarization free energy of solvation -77.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds