Wall clock time and date at job start Sat Apr 11 2020 06:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47293 * 2 1 4 4 C 1.52996 * 109.47303 * 240.00242 * 2 1 3 5 5 C 1.50696 * 109.47366 * 119.99633 * 2 1 3 6 6 C 1.33000 * 119.99710 * 65.85725 * 5 2 1 7 7 C 1.47099 * 119.99906 * 358.91906 * 6 5 2 8 8 O 1.21622 * 120.00150 * 354.43413 * 7 6 5 9 9 N 1.34775 * 119.99865 * 174.42779 * 7 6 5 10 10 C 1.46509 * 119.99975 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.84655 * 23.80652 * 10 9 7 12 12 C 1.53780 * 113.61283 * 155.00008 * 10 9 7 13 13 C 1.53784 * 87.07812 * 89.20312 * 12 10 9 14 14 H 1.09003 * 113.61322 * 270.79750 * 13 12 10 15 15 N 1.46497 * 113.61566 * 139.98097 * 13 12 10 16 16 C 1.34778 * 120.00287 * 154.99922 * 15 13 12 17 17 O 1.21284 * 119.99685 * 359.97438 * 16 15 13 18 18 C 1.50700 * 120.00356 * 180.02562 * 16 15 13 19 19 S 1.80992 * 109.47358 * 179.97438 * 18 16 15 20 20 C 1.76197 * 100.00169 * 179.97438 * 19 18 16 21 21 H 1.08010 * 119.99808 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00207 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99883 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00105 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47149 * 89.99699 * 24 22 20 26 26 H 1.48500 * 109.46944 * 330.00058 * 24 22 20 27 27 H 1.48495 * 109.47458 * 210.00092 * 24 22 20 28 28 C 1.53777 * 87.08460 * 25.43053 * 13 12 10 29 29 H 1.09006 * 109.46798 * 329.71882 * 1 2 3 30 30 H 1.08998 * 109.47051 * 89.71953 * 1 2 3 31 31 H 1.08999 * 109.46896 * 209.72349 * 1 2 3 32 32 H 1.09001 * 109.47017 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46807 * 299.99772 * 3 2 1 34 34 H 1.08998 * 109.47270 * 59.99979 * 3 2 1 35 35 H 1.09005 * 109.46986 * 263.11861 * 4 2 1 36 36 H 1.08999 * 109.47061 * 23.11551 * 4 2 1 37 37 H 1.09000 * 109.47887 * 143.12131 * 4 2 1 38 38 H 1.07998 * 120.00387 * 245.85127 * 5 2 1 39 39 H 1.08000 * 119.99893 * 178.92921 * 6 5 2 40 40 H 0.97001 * 120.00128 * 0.02562 * 9 7 6 41 41 H 1.08997 * 113.61671 * 334.65742 * 12 10 9 42 42 H 1.09001 * 113.61457 * 203.74592 * 12 10 9 43 43 H 0.97007 * 119.99972 * 334.99596 * 15 13 12 44 44 H 1.08999 * 109.46983 * 59.99430 * 18 16 15 45 45 H 1.09003 * 109.47005 * 300.00279 * 18 16 15 46 46 H 0.97006 * 119.99885 * 179.97438 * 23 22 20 47 47 H 1.09001 * 113.61358 * 89.11101 * 28 13 12 48 48 H 1.08997 * 113.61933 * 220.02208 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2305 6 6 1.8099 -2.0125 1.3839 7 6 1.0529 -2.7545 0.3640 8 8 0.5440 -2.1607 -0.5674 9 7 0.9233 -4.0925 0.4617 10 6 0.1698 -4.8316 -0.5544 11 1 0.1207 -4.3080 -1.5091 12 6 0.5890 -6.3057 -0.6811 13 6 -0.4625 -6.6157 0.3975 14 1 -0.0754 -6.5553 1.4147 15 7 -1.2144 -7.8477 0.1472 16 6 -1.7762 -8.5149 1.1747 17 8 -1.6587 -8.0955 2.3067 18 6 -2.5493 -9.7827 0.9174 19 16 -3.1740 -10.4372 2.4849 20 6 -4.0126 -11.8739 1.9041 21 1 -4.0200 -12.1054 0.8491 22 6 -4.6629 -12.7086 2.8023 23 7 -5.2890 -13.7821 2.3684 24 14 -4.6496 -12.3086 4.6269 25 1 -5.8198 -11.4553 4.9551 26 1 -3.3983 -11.5843 4.9657 27 1 -4.7201 -13.5681 5.4103 28 6 -1.1941 -5.3434 -0.0616 29 1 -0.3633 0.8875 0.5182 30 1 -0.3633 0.0050 -1.0276 31 1 -0.3633 -0.8925 0.5095 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 2.2772 -1.7555 -1.0002 36 1 1.2700 -0.7006 -2.0205 37 1 2.9362 -0.2214 -1.6170 38 1 2.5731 -0.1620 1.9876 39 1 2.1849 -2.5252 2.2574 40 1 1.3289 -4.5661 1.2047 41 1 1.6129 -6.4976 -0.3605 42 1 0.3595 -6.7430 -1.6528 43 1 -1.3081 -8.1834 -0.7581 44 1 -1.8946 -10.5192 0.4515 45 1 -3.3865 -9.5691 0.2529 46 1 -5.7431 -14.3657 2.9962 47 1 -1.9109 -5.5175 -0.8641 48 1 -1.6095 -4.7583 0.7589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524877933.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:03 Heat of formation + Delta-G solvation = -13.663444 kcal Electronic energy + Delta-G solvation = -26602.337260 eV Core-core repulsion = 22785.702286 eV Total energy + Delta-G solvation = -3816.634974 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.10557 -39.96723 -38.44107 -36.78344 -34.21379 -32.84325 -32.45241 -31.63188 -29.29338 -27.48488 -27.42714 -26.05134 -25.67168 -25.15169 -23.32638 -21.24550 -20.60491 -19.87679 -18.89803 -17.85753 -17.33263 -16.64856 -16.41495 -16.12827 -15.70678 -15.24507 -15.05722 -14.97683 -14.73217 -14.24385 -14.03612 -13.98358 -13.82262 -13.42003 -13.17394 -12.95301 -12.84736 -12.80755 -12.47832 -12.33302 -12.13301 -12.04676 -11.50498 -11.28456 -11.19996 -11.10700 -11.02618 -10.97745 -10.87980 -10.81357 -10.56564 -9.87167 -9.74670 -9.70406 -9.54586 -9.15849 -9.02255 -8.92582 -8.52271 -6.93750 -6.30459 -4.02402 1.03390 2.74797 2.86725 2.89755 2.97301 3.29624 3.33217 3.48831 3.64513 4.11318 4.26089 4.29316 4.31630 4.39975 4.64335 4.68369 4.71978 4.75259 4.80551 5.05526 5.07495 5.08655 5.17853 5.32940 5.35550 5.37282 5.45525 5.46349 5.55886 5.61946 5.64748 5.71431 5.73707 5.77129 5.82114 5.85065 5.91376 5.98169 5.99602 6.13944 6.24481 6.26948 6.35934 6.54051 7.22554 7.57497 7.92534 7.96599 8.39953 8.44900 9.15697 10.78746 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031309 B = 0.001712 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.101487 B =16353.361747 C =16767.826987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.043 4.043 3 C -0.143 4.143 4 C -0.112 4.112 5 C -0.046 4.046 6 C -0.226 4.226 7 C 0.532 3.468 8 O -0.513 6.513 9 N -0.711 5.711 10 C 0.126 3.874 11 H 0.108 0.892 12 C -0.153 4.153 13 C 0.126 3.874 14 H 0.113 0.887 15 N -0.726 5.726 16 C 0.532 3.468 17 O -0.520 6.520 18 C -0.125 4.125 19 S -0.142 6.142 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.236 1.236 27 H -0.274 1.274 28 C -0.164 4.164 29 H 0.033 0.967 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.028 0.972 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.401 0.599 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.401 0.599 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.094 0.906 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.612 26.566 -7.698 32.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.043 4.043 3 C -0.200 4.200 4 C -0.169 4.169 5 C -0.066 4.066 6 C -0.247 4.247 7 C 0.323 3.677 8 O -0.391 6.391 9 N -0.362 5.362 10 C 0.020 3.980 11 H 0.126 0.874 12 C -0.192 4.192 13 C 0.020 3.980 14 H 0.131 0.869 15 N -0.379 5.379 16 C 0.318 3.682 17 O -0.395 6.395 18 C -0.276 4.276 19 S 0.084 5.916 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.160 1.160 27 H -0.199 1.199 28 C -0.204 4.204 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.236 0.764 41 H 0.098 0.902 42 H 0.118 0.882 43 H 0.235 0.765 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.112 0.888 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.326 27.500 -6.433 33.134 hybrid contribution -0.183 -1.133 -0.483 1.245 sum 17.143 26.368 -6.915 32.202 Atomic orbital electron populations 1.21935 0.92482 1.00318 1.02289 1.19733 0.96859 0.94289 0.93385 1.22027 1.00633 0.95482 1.01896 1.22097 0.99003 0.99832 0.95960 1.23919 0.91985 0.94181 0.96520 1.22544 1.05292 0.96023 1.00811 1.18494 0.81314 0.81715 0.86227 1.90955 1.47523 1.66775 1.33859 1.45628 1.55187 1.07253 1.28130 1.21616 0.91963 0.91610 0.92855 0.87409 1.23752 0.99969 0.95075 1.00427 1.22501 0.92112 0.83487 0.99870 0.86926 1.45944 1.55588 1.26147 1.10248 1.20336 0.78414 0.84694 0.84762 1.90691 1.58778 1.67961 1.22029 1.23292 1.02304 0.96813 1.05185 1.84781 1.68726 1.30817 1.07250 1.22319 1.38140 1.08543 0.97973 0.89389 1.24712 0.93500 0.93790 0.99283 1.69941 1.32918 1.13158 1.35631 0.86732 0.81355 0.79024 0.84722 1.19203 1.15951 1.19926 1.23957 0.97142 0.97117 1.02178 0.94801 0.92297 0.91573 0.92778 0.92335 0.92732 0.91981 0.91952 0.95358 0.85765 0.85462 0.76406 0.90180 0.88184 0.76491 0.88435 0.88478 0.91933 0.88767 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 7.56 37.16 0.28 -0.74 16 2 C -0.04 -0.33 0.75 -155.66 -0.12 -0.44 16 3 C -0.14 -0.87 8.03 37.16 0.30 -0.58 16 4 C -0.11 -0.97 7.54 37.16 0.28 -0.69 16 5 C -0.05 -0.30 8.55 -36.13 -0.31 -0.61 16 6 C -0.23 -1.53 9.49 -37.81 -0.36 -1.89 16 7 C 0.53 4.54 5.83 -12.67 -0.07 4.47 16 8 O -0.51 -5.37 7.94 5.26 0.04 -5.33 16 9 N -0.71 -5.18 5.26 -54.19 -0.29 -5.46 16 10 C 0.13 0.96 4.32 -67.11 -0.29 0.67 16 11 H 0.11 0.90 7.46 -51.93 -0.39 0.51 16 12 C -0.15 -1.03 7.58 -25.92 -0.20 -1.23 16 13 C 0.13 1.24 4.12 -67.12 -0.28 0.97 16 14 H 0.11 1.29 7.46 -51.93 -0.39 0.90 16 15 N -0.73 -8.48 5.35 -53.02 -0.28 -8.77 16 16 C 0.53 9.05 7.85 -10.98 -0.09 8.97 16 17 O -0.52 -10.84 15.46 5.55 0.09 -10.76 16 18 C -0.13 -2.36 6.16 36.01 0.22 -2.14 16 19 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 20 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 21 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 22 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.44 13.97 55.49 0.78 -25.66 16 24 Si 0.86 21.68 27.74 -169.99 -4.72 16.97 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 27 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 28 C -0.16 -1.51 7.68 -25.92 -0.20 -1.71 16 29 H 0.03 0.27 7.82 -51.93 -0.41 -0.13 16 30 H 0.06 0.58 7.22 -51.93 -0.37 0.20 16 31 H 0.07 0.69 5.44 -51.93 -0.28 0.41 16 32 H 0.05 0.29 8.12 -51.93 -0.42 -0.13 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.30 8.11 -51.93 -0.42 -0.12 16 35 H 0.06 0.59 4.82 -51.93 -0.25 0.34 16 36 H 0.06 0.61 6.79 -51.93 -0.35 0.26 16 37 H 0.03 0.22 7.73 -51.93 -0.40 -0.18 16 38 H 0.12 0.56 7.99 -52.49 -0.42 0.14 16 39 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.40 2.29 8.69 -40.82 -0.35 1.94 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.56 8.12 -51.93 -0.42 0.13 16 43 H 0.40 3.53 8.73 -40.82 -0.36 3.17 16 44 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 45 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 46 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 393.96 15.07 5.94 5.94 Total: -1.00 -34.41 393.96 -8.82 -43.24 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -7.77 Total: 2.30 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -0.61 Total: -6.90 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.21 Total: -39.90 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.13 Total: -16.09 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.72 Total: 16.97 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.41 -8.82 -43.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524877933.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.573 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds