Wall clock time and date at job start Sat Apr 11 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50699 * 120.00168 * 2 1 4 4 C 1.32997 * 119.99958 * 180.02562 * 2 1 3 5 5 C 1.47104 * 120.00025 * 352.56409 * 4 2 1 6 6 O 1.21608 * 119.99621 * 353.22097 * 5 4 2 7 7 N 1.34776 * 119.99911 * 173.21975 * 5 4 2 8 8 C 1.46925 * 120.62867 * 356.39627 * 7 5 4 9 9 C 1.53199 * 108.76589 * 126.36209 * 8 7 5 10 10 C 1.53044 * 109.31097 * 54.64941 * 9 8 7 11 11 C 1.53038 * 109.52686 * 298.61642 * 10 9 8 12 12 H 1.09001 * 109.49728 * 301.42253 * 11 10 9 13 13 C 1.53002 * 109.49857 * 181.36012 * 11 10 9 14 14 N 1.46491 * 109.47425 * 174.99877 * 13 11 10 15 15 C 1.34778 * 120.00208 * 179.97438 * 14 13 11 16 16 O 1.21279 * 119.99977 * 0.02562 * 15 14 13 17 17 C 1.50707 * 120.00093 * 180.02562 * 15 14 13 18 18 S 1.81000 * 109.46920 * 180.02562 * 17 15 14 19 19 C 1.76196 * 99.99889 * 179.97438 * 18 17 15 20 20 H 1.08007 * 120.00345 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99368 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00302 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47292 * 90.00610 * 23 21 19 25 25 H 1.48508 * 109.47127 * 210.00455 * 23 21 19 26 26 H 1.48496 * 109.47440 * 329.99893 * 23 21 19 27 27 C 1.46918 * 120.62697 * 176.36830 * 7 5 4 28 28 H 1.08991 * 109.47128 * 263.88078 * 1 2 3 29 29 H 1.08999 * 109.46490 * 23.88501 * 1 2 3 30 30 H 1.09001 * 109.46598 * 143.87903 * 1 2 3 31 31 H 1.09000 * 109.47000 * 269.99879 * 3 2 1 32 32 H 1.08998 * 109.46925 * 30.00043 * 3 2 1 33 33 H 1.08995 * 109.47250 * 150.00342 * 3 2 1 34 34 H 1.07997 * 119.99977 * 172.56490 * 4 2 1 35 35 H 1.09007 * 109.58382 * 246.14944 * 8 7 5 36 36 H 1.08993 * 109.58968 * 6.43312 * 8 7 5 37 37 H 1.08999 * 109.50232 * 294.69172 * 9 8 7 38 38 H 1.08998 * 109.48730 * 174.59555 * 9 8 7 39 39 H 1.09004 * 109.45441 * 178.60286 * 10 9 8 40 40 H 1.08993 * 109.46054 * 58.63305 * 10 9 8 41 41 H 1.09007 * 109.46686 * 295.00202 * 13 11 10 42 42 H 1.08997 * 109.46939 * 54.99770 * 13 11 10 43 43 H 0.97004 * 120.00007 * 0.02562 * 14 13 11 44 44 H 1.09002 * 109.46757 * 300.00287 * 17 15 14 45 45 H 1.08994 * 109.46905 * 60.00154 * 17 15 14 46 46 H 0.97004 * 120.00031 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.58962 * 113.84563 * 27 7 5 48 48 H 1.08996 * 109.70775 * 353.48790 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4458 -2.4205 0.1638 6 8 0.2576 -2.4117 0.4229 7 7 2.0972 -3.5924 0.0271 8 6 3.5134 -3.6206 -0.3630 9 6 4.2915 -4.4478 0.6653 10 6 3.6476 -5.8302 0.7944 11 6 2.2066 -5.6793 1.2870 12 1 2.2024 -5.1633 2.2472 13 6 1.5744 -7.0633 1.4483 14 7 0.2381 -6.9247 2.0322 15 6 -0.5119 -8.0198 2.2663 16 8 -0.0802 -9.1200 1.9941 17 6 -1.8869 -7.8773 2.8665 18 16 -2.6346 -9.5145 3.0574 19 6 -4.1865 -9.0623 3.7586 20 1 -4.4153 -8.0222 3.9386 21 6 -5.1155 -10.0426 4.0787 22 7 -4.8369 -11.3102 3.8589 23 14 -6.7610 -9.5631 4.8214 24 1 -7.7468 -9.3344 3.7347 25 1 -7.2426 -10.6555 5.7047 26 1 -6.6019 -8.3185 5.6155 27 6 1.4047 -4.8659 0.2661 28 1 -0.3633 -0.1095 1.0217 29 1 -0.3632 0.9397 -0.4161 30 1 -0.3632 -0.8302 -0.6058 31 1 2.4422 1.6197 -1.0277 32 1 1.6715 2.0647 0.5138 33 1 3.2129 1.1747 0.5137 34 1 3.2452 -1.1557 -0.1215 35 1 3.6119 -4.0759 -1.3485 36 1 3.9055 -2.6039 -0.3894 37 1 4.2675 -3.9435 1.6313 38 1 5.3251 -4.5571 0.3370 39 1 4.2142 -6.4294 1.5072 40 1 3.6495 -6.3238 -0.1773 41 1 1.4968 -7.5431 0.4726 42 1 2.1962 -7.6724 2.1043 43 1 -0.1074 -6.0448 2.2496 44 1 -1.8095 -7.3975 3.8422 45 1 -2.5083 -7.2680 2.2103 46 1 -5.4860 -11.9954 4.0829 47 1 1.3312 -5.4228 -0.6680 48 1 0.4053 -4.6734 0.6562 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525779132.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:12 Heat of formation + Delta-G solvation = -68.097515 kcal Electronic energy + Delta-G solvation = -26757.367230 eV Core-core repulsion = 22938.371818 eV Total energy + Delta-G solvation = -3818.995412 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.68782 -39.23072 -38.10598 -35.73492 -35.09342 -33.07999 -32.39095 -31.64734 -29.42551 -28.54767 -28.09205 -25.88416 -25.57169 -25.34124 -22.55142 -21.50303 -20.33017 -19.91608 -18.36495 -17.86674 -17.62761 -16.26281 -16.17676 -15.91995 -15.60234 -15.27659 -14.78656 -14.76849 -14.71399 -14.32806 -14.28382 -14.01315 -13.71459 -13.59002 -13.25087 -13.16943 -13.03329 -12.79642 -12.64437 -12.52092 -12.31764 -12.04719 -11.91766 -11.70269 -11.50326 -11.23632 -11.05571 -11.02499 -10.98470 -10.94341 -10.71556 -9.80134 -9.77156 -9.52155 -9.36158 -9.03416 -8.89201 -8.82679 -8.19630 -6.45853 -6.18079 -3.88160 1.01405 2.68151 2.98349 3.07741 3.14742 3.25534 3.30913 3.35788 3.75544 4.13882 4.23615 4.24383 4.41662 4.45215 4.50044 4.54696 4.66381 4.81861 4.99952 5.00395 5.03350 5.09275 5.16725 5.17052 5.27089 5.29058 5.34983 5.37525 5.38853 5.43976 5.54690 5.58367 5.64574 5.65308 5.76222 5.77159 5.86364 5.95229 6.01410 6.09966 6.17323 6.20544 6.26089 6.64910 7.12889 7.63639 7.74031 7.95243 8.39284 8.65455 9.27341 10.89365 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.002154 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.480791 B =12997.340957 C =14907.682324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.027 4.027 3 C -0.128 4.128 4 C -0.244 4.244 5 C 0.546 3.454 6 O -0.538 6.538 7 N -0.611 5.611 8 C 0.105 3.895 9 C -0.134 4.134 10 C -0.113 4.113 11 C -0.113 4.113 12 H 0.081 0.919 13 C 0.129 3.871 14 N -0.740 5.740 15 C 0.533 3.467 16 O -0.519 6.519 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.115 3.885 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.128 0.872 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.399 0.601 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.268 0.732 47 H 0.070 0.930 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.677 24.565 -9.672 34.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.029 4.029 3 C -0.185 4.185 4 C -0.264 4.264 5 C 0.338 3.662 6 O -0.417 6.417 7 N -0.343 5.343 8 C -0.018 4.018 9 C -0.173 4.173 10 C -0.151 4.151 11 C -0.132 4.132 12 H 0.100 0.900 13 C 0.004 3.996 14 N -0.395 5.395 15 C 0.319 3.681 16 O -0.393 6.393 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.007 4.007 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.146 0.854 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.233 0.767 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 21.715 22.522 -9.986 32.840 hybrid contribution -1.469 1.915 0.882 2.570 sum 20.246 24.437 -9.104 33.014 Atomic orbital electron populations 1.21160 0.90765 1.02435 1.03860 1.22627 0.97008 0.94461 0.88832 1.21022 1.00111 0.94441 1.02914 1.22419 1.00230 0.91983 1.11810 1.18571 0.86669 0.84030 0.76888 1.90786 1.15088 1.87153 1.48669 1.47970 1.11551 1.05929 1.68898 1.21838 0.80432 1.01522 0.98019 1.21921 0.99298 0.96139 0.99913 1.21499 0.94412 0.96964 1.02231 1.21775 0.95730 0.95808 0.99936 0.90029 1.21251 0.83677 0.95421 0.99211 1.46053 1.17163 1.09697 1.66605 1.20298 0.86466 0.83901 0.77461 1.90696 1.72591 1.25610 1.50419 1.23537 0.95525 1.08231 1.03159 1.85357 1.16011 0.99887 1.82157 1.22877 1.01619 0.95792 1.47964 0.90920 1.24995 0.98785 0.94476 0.95393 1.70024 1.35490 0.99571 1.45265 0.86163 0.82132 0.78242 0.78940 1.20272 1.20778 1.19697 1.21663 0.97019 0.83213 0.98809 0.90053 0.92591 0.89335 0.90366 0.90730 0.91087 0.85447 0.91209 0.89431 0.91316 0.90382 0.90941 0.91160 0.91370 0.91166 0.76723 0.89240 0.89167 0.92229 0.91150 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 8.45 36.01 0.30 -0.78 16 2 C -0.03 -0.20 6.11 -101.17 -0.62 -0.82 16 3 C -0.13 -0.54 10.01 36.00 0.36 -0.18 16 4 C -0.24 -1.86 8.92 -37.80 -0.34 -2.20 16 5 C 0.55 5.73 7.48 -12.66 -0.09 5.64 16 6 O -0.54 -7.42 12.74 5.27 0.07 -7.35 16 7 N -0.61 -5.29 2.97 -174.17 -0.52 -5.81 16 8 C 0.10 0.57 6.35 -3.71 -0.02 0.55 16 9 C -0.13 -0.67 6.08 -26.61 -0.16 -0.83 16 10 C -0.11 -0.72 5.17 -26.69 -0.14 -0.86 16 11 C -0.11 -0.96 2.37 -90.50 -0.21 -1.17 16 12 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 13 C 0.13 1.48 5.07 -4.05 -0.02 1.46 16 14 N -0.74 -10.29 5.33 -60.29 -0.32 -10.61 16 15 C 0.53 10.25 7.85 -10.98 -0.09 10.16 16 16 O -0.52 -12.01 15.86 5.56 0.09 -11.92 16 17 C -0.15 -3.23 6.16 36.01 0.22 -3.01 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.56 9.50 30.94 0.29 -15.27 16 20 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.58 13.22 55.49 0.73 -25.84 16 23 Si 0.92 21.86 29.55 -169.99 -5.02 16.83 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.12 1.10 5.51 -3.71 -0.02 1.08 16 28 H 0.08 0.78 8.00 -51.93 -0.42 0.36 16 29 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.09 0.95 6.22 -51.93 -0.32 0.63 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 33 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 34 H 0.13 0.64 5.90 -52.49 -0.31 0.33 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.34 5.31 -51.93 -0.28 0.06 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.40 4.73 7.71 -40.82 -0.31 4.42 16 44 H 0.09 1.75 8.14 -51.91 -0.42 1.32 16 45 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 46 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.09 1.09 6.24 -51.93 -0.32 0.76 16 LS Contribution 399.56 15.07 6.02 6.02 Total: -1.00 -36.58 399.56 -9.64 -46.21 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.84 Total: 0.59 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -0.63 Total: -4.22 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: -0.11 Total: -42.27 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.16 Total: -19.27 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.58 -9.64 -46.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525779132.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.887 kcal (2) G-P(sol) polarization free energy of solvation -36.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds