Wall clock time and date at job start Sat Apr 11 2020 06:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50699 * 120.00168 * 2 1 4 4 C 1.32997 * 119.99958 * 180.02562 * 2 1 3 5 5 C 1.47104 * 120.00025 * 352.56409 * 4 2 1 6 6 O 1.21608 * 119.99621 * 353.22097 * 5 4 2 7 7 N 1.34776 * 119.99911 * 173.21975 * 5 4 2 8 8 C 1.46925 * 120.62867 * 356.39627 * 7 5 4 9 9 C 1.53199 * 108.76589 * 126.36209 * 8 7 5 10 10 C 1.53044 * 109.31097 * 54.64941 * 9 8 7 11 11 C 1.53038 * 109.52686 * 298.61642 * 10 9 8 12 12 H 1.09001 * 109.49728 * 301.42253 * 11 10 9 13 13 C 1.53002 * 109.49857 * 181.36012 * 11 10 9 14 14 N 1.46491 * 109.47425 * 174.99877 * 13 11 10 15 15 C 1.34778 * 120.00208 * 179.97438 * 14 13 11 16 16 O 1.21279 * 119.99977 * 0.02562 * 15 14 13 17 17 C 1.50707 * 120.00093 * 180.02562 * 15 14 13 18 18 S 1.81000 * 109.46920 * 180.02562 * 17 15 14 19 19 C 1.76196 * 99.99889 * 179.97438 * 18 17 15 20 20 H 1.08007 * 120.00345 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99368 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00302 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47292 * 90.00610 * 23 21 19 25 25 H 1.48508 * 109.47127 * 210.00455 * 23 21 19 26 26 H 1.48496 * 109.47440 * 329.99893 * 23 21 19 27 27 C 1.46918 * 120.62697 * 176.36830 * 7 5 4 28 28 H 1.08991 * 109.47128 * 263.88078 * 1 2 3 29 29 H 1.08999 * 109.46490 * 23.88501 * 1 2 3 30 30 H 1.09001 * 109.46598 * 143.87903 * 1 2 3 31 31 H 1.09000 * 109.47000 * 269.99879 * 3 2 1 32 32 H 1.08998 * 109.46925 * 30.00043 * 3 2 1 33 33 H 1.08995 * 109.47250 * 150.00342 * 3 2 1 34 34 H 1.07997 * 119.99977 * 172.56490 * 4 2 1 35 35 H 1.09007 * 109.58382 * 246.14944 * 8 7 5 36 36 H 1.08993 * 109.58968 * 6.43312 * 8 7 5 37 37 H 1.08999 * 109.50232 * 294.69172 * 9 8 7 38 38 H 1.08998 * 109.48730 * 174.59555 * 9 8 7 39 39 H 1.09004 * 109.45441 * 178.60286 * 10 9 8 40 40 H 1.08993 * 109.46054 * 58.63305 * 10 9 8 41 41 H 1.09007 * 109.46686 * 295.00202 * 13 11 10 42 42 H 1.08997 * 109.46939 * 54.99770 * 13 11 10 43 43 H 0.97004 * 120.00007 * 0.02562 * 14 13 11 44 44 H 1.09002 * 109.46757 * 300.00287 * 17 15 14 45 45 H 1.08994 * 109.46905 * 60.00154 * 17 15 14 46 46 H 0.97004 * 120.00031 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.58962 * 113.84563 * 27 7 5 48 48 H 1.08996 * 109.70775 * 353.48790 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4458 -2.4205 0.1638 6 8 0.2576 -2.4117 0.4229 7 7 2.0972 -3.5924 0.0271 8 6 3.5134 -3.6206 -0.3630 9 6 4.2915 -4.4478 0.6653 10 6 3.6476 -5.8302 0.7944 11 6 2.2066 -5.6793 1.2870 12 1 2.2024 -5.1633 2.2472 13 6 1.5744 -7.0633 1.4483 14 7 0.2381 -6.9247 2.0322 15 6 -0.5119 -8.0198 2.2663 16 8 -0.0802 -9.1200 1.9941 17 6 -1.8869 -7.8773 2.8665 18 16 -2.6346 -9.5145 3.0574 19 6 -4.1865 -9.0623 3.7586 20 1 -4.4153 -8.0222 3.9386 21 6 -5.1155 -10.0426 4.0787 22 7 -4.8369 -11.3102 3.8589 23 14 -6.7610 -9.5631 4.8214 24 1 -7.7468 -9.3344 3.7347 25 1 -7.2426 -10.6555 5.7047 26 1 -6.6019 -8.3185 5.6155 27 6 1.4047 -4.8659 0.2661 28 1 -0.3633 -0.1095 1.0217 29 1 -0.3632 0.9397 -0.4161 30 1 -0.3632 -0.8302 -0.6058 31 1 2.4422 1.6197 -1.0277 32 1 1.6715 2.0647 0.5138 33 1 3.2129 1.1747 0.5137 34 1 3.2452 -1.1557 -0.1215 35 1 3.6119 -4.0759 -1.3485 36 1 3.9055 -2.6039 -0.3894 37 1 4.2675 -3.9435 1.6313 38 1 5.3251 -4.5571 0.3370 39 1 4.2142 -6.4294 1.5072 40 1 3.6495 -6.3238 -0.1773 41 1 1.4968 -7.5431 0.4726 42 1 2.1962 -7.6724 2.1043 43 1 -0.1074 -6.0448 2.2496 44 1 -1.8095 -7.3975 3.8422 45 1 -2.5083 -7.2680 2.2103 46 1 -5.4860 -11.9954 4.0829 47 1 1.3312 -5.4228 -0.6680 48 1 0.4053 -4.6734 0.6562 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525779132.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:11 Heat of formation + Delta-G solvation = -92.429990 kcal Electronic energy + Delta-G solvation = -26758.422365 eV Core-core repulsion = 22938.371818 eV Total energy + Delta-G solvation = -3820.050547 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.43366 -40.60742 -38.93934 -36.34290 -36.16457 -34.60485 -33.96093 -32.48199 -30.82636 -29.23060 -28.64132 -27.72826 -26.64861 -26.19381 -23.22898 -22.26362 -21.65841 -20.64047 -19.84123 -18.95291 -18.40256 -17.77849 -17.25748 -16.99606 -16.89618 -16.44309 -16.29551 -15.87503 -15.69332 -15.31098 -14.92388 -14.82732 -14.72160 -14.55566 -14.29505 -14.27121 -14.06778 -13.83433 -13.41944 -13.35228 -13.20296 -13.18724 -12.92292 -12.87497 -12.66560 -12.60481 -12.38084 -12.12633 -11.87470 -11.78207 -11.61957 -11.56552 -11.16152 -10.96839 -10.54876 -10.31425 -10.16499 -10.12339 -9.52115 -8.68832 -8.36558 -6.14747 0.41026 1.24750 1.40883 1.44633 1.56005 1.57220 2.03125 2.24026 2.27684 2.28361 2.97234 3.29444 3.54980 3.64430 3.73652 3.85289 3.88608 3.96867 4.07857 4.12464 4.24899 4.29706 4.33130 4.47381 4.52623 4.57918 4.59625 4.67614 4.68271 4.73848 4.75562 4.85503 4.87972 4.91738 5.00371 5.07936 5.13821 5.19372 5.21968 5.38704 5.39961 5.44314 5.50281 5.55650 5.68238 6.18014 6.41570 6.47101 7.04517 7.18013 7.22001 8.72718 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.002154 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.480791 B =12997.340957 C =14907.682324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.028 4.028 3 C -0.124 4.124 4 C -0.250 4.250 5 C 0.533 3.467 6 O -0.584 6.584 7 N -0.608 5.608 8 C 0.099 3.901 9 C -0.127 4.127 10 C -0.112 4.112 11 C -0.096 4.096 12 H 0.080 0.920 13 C 0.128 3.872 14 N -0.716 5.716 15 C 0.535 3.465 16 O -0.563 6.563 17 C -0.132 4.132 18 S -0.145 6.145 19 C -0.548 4.548 20 H 0.080 0.920 21 C 0.013 3.987 22 N -0.910 5.910 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.260 1.260 27 C 0.115 3.885 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.159 0.841 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.411 0.589 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.272 0.728 47 H 0.070 0.930 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.407 27.460 -9.801 37.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.030 4.030 3 C -0.180 4.180 4 C -0.270 4.270 5 C 0.327 3.673 6 O -0.467 6.467 7 N -0.340 5.340 8 C -0.023 4.023 9 C -0.165 4.165 10 C -0.151 4.151 11 C -0.116 4.116 12 H 0.098 0.902 13 C 0.004 3.996 14 N -0.370 5.370 15 C 0.321 3.679 16 O -0.441 6.441 17 C -0.284 4.284 18 S 0.082 5.918 19 C -0.696 4.696 20 H 0.098 0.902 21 C -0.192 4.192 22 N -0.546 5.546 23 Si 0.821 3.179 24 H -0.193 1.193 25 H -0.200 1.200 26 H -0.184 1.184 27 C -0.008 4.008 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.177 0.823 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.247 0.753 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 23.506 25.465 -10.130 36.105 hybrid contribution -1.924 1.084 0.857 2.369 sum 21.582 26.549 -9.274 35.449 Atomic orbital electron populations 1.21082 0.92429 1.02235 1.02455 1.22890 0.96199 0.96024 0.87878 1.21066 1.00306 0.92562 1.04095 1.22560 1.01516 0.90513 1.12428 1.19192 0.86416 0.85385 0.76350 1.90766 1.17120 1.87859 1.50935 1.48079 1.12848 1.04998 1.68080 1.22129 0.78381 1.03158 0.98597 1.21899 1.00304 0.94648 0.99687 1.21533 0.92615 0.98387 1.02518 1.21640 0.96876 0.93401 0.99668 0.90166 1.21443 0.82063 0.97470 0.98606 1.45864 1.17554 1.08814 1.64790 1.19996 0.86146 0.84384 0.77369 1.90682 1.73324 1.27447 1.52662 1.23390 0.96441 1.03770 1.04758 1.85486 1.17413 1.06339 1.82597 1.23199 1.01904 0.96330 1.48191 0.90167 1.26137 1.03182 0.94266 0.95584 1.70180 1.37142 1.00927 1.46362 0.84944 0.76410 0.78354 0.78211 1.19287 1.20023 1.18376 1.21553 0.96331 0.84040 0.98922 0.91694 0.90746 0.92040 0.88885 0.90225 0.89624 0.82333 0.90218 0.87303 0.91614 0.87854 0.90372 0.90675 0.91782 0.91333 0.75266 0.87462 0.87664 0.91920 0.91190 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.45 71.24 0.60 -1.58 16 2 C -0.03 -0.36 6.11 -17.62 -0.11 -0.47 16 3 C -0.12 -0.68 10.01 71.24 0.71 0.03 16 4 C -0.25 -3.35 8.92 23.43 0.21 -3.14 16 5 C 0.53 10.97 7.48 86.57 0.65 11.61 16 6 O -0.58 -16.82 12.74 -4.06 -0.05 -16.87 16 7 N -0.61 -9.81 2.97 -823.19 -2.45 -12.26 16 8 C 0.10 0.79 6.35 86.36 0.55 1.33 16 9 C -0.13 -0.85 6.08 30.68 0.19 -0.66 16 10 C -0.11 -1.17 5.17 30.62 0.16 -1.02 16 11 C -0.10 -1.52 2.37 -10.72 -0.03 -1.54 16 12 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 13 C 0.13 2.86 5.07 86.38 0.44 3.30 16 14 N -0.72 -19.73 5.33 -463.06 -2.47 -22.20 16 15 C 0.54 20.82 7.85 87.66 0.69 21.51 16 16 O -0.56 -26.78 15.86 -3.03 -0.05 -26.83 16 17 C -0.13 -5.60 6.16 71.24 0.44 -5.16 16 18 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 19 C -0.55 -32.36 9.50 67.95 0.65 -31.71 16 20 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.77 5.49 84.86 0.47 1.23 16 22 N -0.91 -56.88 13.22 21.65 0.29 -56.59 16 23 Si 1.00 44.83 29.55 68.60 2.03 46.86 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 26 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 27 C 0.11 2.13 5.51 86.36 0.48 2.61 16 28 H 0.06 1.31 8.00 -2.39 -0.02 1.30 16 29 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 30 H 0.06 1.41 6.22 -2.39 -0.01 1.40 16 31 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.08 0.38 8.12 -2.39 -0.02 0.36 16 33 H 0.08 0.26 8.07 -2.39 -0.02 0.24 16 34 H 0.16 1.01 5.90 -2.91 -0.02 0.99 16 35 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.11 0.42 5.31 -2.39 -0.01 0.40 16 37 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 1.53 8.14 -2.38 -0.02 1.52 16 42 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.41 9.53 7.71 -92.71 -0.71 8.82 16 44 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 45 H 0.11 4.12 8.14 -2.40 -0.02 4.10 16 46 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 47 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.07 1.67 6.24 -2.39 -0.01 1.65 16 Total: -1.00 -83.52 399.56 2.46 -81.05 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.24 Total: 20.00 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 6.08 Total: -3.64 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -4.63 Total: -91.05 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -0.10 Total: -43.70 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -83.52 2.46 -81.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525779132.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.376 kcal (2) G-P(sol) polarization free energy of solvation -83.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds