Wall clock time and date at job start Sat Apr 11 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50695 * 120.00001 * 2 1 4 4 C 1.32996 * 119.99698 * 179.97438 * 2 1 3 5 5 C 1.47103 * 120.00025 * 352.84261 * 4 2 1 6 6 O 1.21610 * 120.00128 * 354.00851 * 5 4 2 7 7 N 1.34781 * 119.99671 * 173.72897 * 5 4 2 8 8 C 1.46504 * 119.99851 * 180.27373 * 7 5 4 9 9 C 1.53001 * 109.47186 * 275.00347 * 8 7 5 10 10 C 1.53000 * 109.46612 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.46999 * 60.00416 * 10 9 8 12 12 N 1.46504 * 109.46905 * 179.97438 * 11 10 9 13 13 C 1.34769 * 120.00267 * 274.99743 * 12 11 10 14 14 O 1.21281 * 119.99860 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00049 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.47153 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00077 * 179.97438 * 16 15 13 18 18 H 1.07993 * 120.00126 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99737 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99630 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00484 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46944 * 89.99658 * 21 19 17 23 23 H 1.48494 * 109.47346 * 210.00058 * 21 19 17 24 24 H 1.48504 * 109.46702 * 329.99948 * 21 19 17 25 25 C 1.53001 * 109.47099 * 299.99286 * 11 10 9 26 26 C 1.53003 * 109.46737 * 155.00132 * 8 7 5 27 27 H 1.08997 * 109.47510 * 264.39266 * 1 2 3 28 28 H 1.09003 * 109.47199 * 24.39781 * 1 2 3 29 29 H 1.09006 * 109.46966 * 144.38878 * 1 2 3 30 30 H 1.08995 * 109.46753 * 269.99203 * 3 2 1 31 31 H 1.09000 * 109.47433 * 29.99666 * 3 2 1 32 32 H 1.09005 * 109.46717 * 149.99744 * 3 2 1 33 33 H 1.08001 * 119.99804 * 172.84461 * 4 2 1 34 34 H 0.96994 * 120.00452 * 0.28155 * 7 5 4 35 35 H 1.08999 * 109.46788 * 35.00583 * 8 7 5 36 36 H 1.08995 * 109.46965 * 299.99844 * 9 8 7 37 37 H 1.09001 * 109.46897 * 60.00178 * 9 8 7 38 38 H 1.08995 * 109.47521 * 299.99740 * 10 9 8 39 39 H 1.09003 * 109.46731 * 179.97438 * 10 9 8 40 40 H 1.08999 * 109.47304 * 59.99785 * 11 10 9 41 41 H 0.97002 * 119.99463 * 95.00239 * 12 11 10 42 42 H 1.09000 * 109.46798 * 299.99974 * 15 13 12 43 43 H 1.09002 * 109.47222 * 60.00215 * 15 13 12 44 44 H 0.97007 * 120.00089 * 180.02562 * 20 19 17 45 45 H 1.08995 * 109.46965 * 300.00397 * 25 11 10 46 46 H 1.09001 * 109.46897 * 180.02562 * 25 11 10 47 47 H 1.08993 * 109.47281 * 300.00091 * 26 8 7 48 48 H 1.08999 * 109.47113 * 60.00650 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4449 -2.4207 0.1598 6 8 0.2528 -2.4125 0.3997 7 7 2.0991 -3.5924 0.0342 8 6 1.3739 -4.8562 0.1869 9 6 1.2987 -5.2251 1.6699 10 6 0.5407 -6.5446 1.8293 11 6 1.2738 -7.6492 1.0655 12 7 0.5483 -8.9128 1.2186 13 6 0.7692 -9.6903 2.2971 14 8 1.5682 -9.3436 3.1411 15 6 0.0234 -10.9903 2.4543 16 16 0.5348 -11.7972 3.9916 17 6 -0.4635 -13.2475 3.9228 18 1 -1.1315 -13.4041 3.0888 19 6 -0.3913 -14.1886 4.9405 20 7 -1.1367 -15.2722 4.8887 21 14 0.7636 -13.9174 6.3834 22 1 0.0507 -13.1776 7.4556 23 1 1.2190 -15.2304 6.9065 24 1 1.9391 -13.1285 5.9350 25 6 1.3490 -7.2803 -0.4175 26 6 2.1074 -5.9605 -0.5768 27 1 -0.3634 -0.1004 1.0227 28 1 -0.3634 0.9359 -0.4245 29 1 -0.3633 -0.8355 -0.5984 30 1 2.4422 1.6196 -1.0276 31 1 1.6714 2.0648 0.5138 32 1 3.2129 1.1746 0.5139 33 1 3.2456 -1.1555 -0.1160 34 1 3.0499 -3.5990 -0.1571 35 1 0.3654 -4.7468 -0.2119 36 1 2.3071 -5.3344 2.0687 37 1 0.7761 -4.4383 2.2140 38 1 -0.4677 -6.4348 1.4306 39 1 0.4875 -6.8076 2.8858 40 1 2.2822 -7.7590 1.4643 41 1 -0.0909 -9.1898 0.5437 42 1 -1.0481 -10.7928 2.4870 43 1 0.2472 -11.6420 1.6096 44 1 -1.0866 -15.9298 5.6001 45 1 0.3405 -7.1706 -0.8161 46 1 1.8708 -8.0675 -0.9616 47 1 2.1610 -5.6977 -1.6332 48 1 3.1159 -6.0699 -0.1780 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526290866.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:19 Heat of formation + Delta-G solvation = -83.011251 kcal Electronic energy + Delta-G solvation = -26363.616129 eV Core-core repulsion = 22543.974009 eV Total energy + Delta-G solvation = -3819.642120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.53146 -39.62195 -38.08620 -35.92213 -34.89879 -33.08894 -32.43005 -31.10729 -30.16643 -28.72702 -28.16831 -27.18560 -25.59623 -23.13786 -22.92773 -21.14139 -20.51794 -20.31818 -19.02245 -17.85613 -17.27560 -16.66716 -16.38664 -16.14337 -15.51316 -15.10447 -14.97166 -14.68118 -14.56896 -14.46683 -14.16810 -14.01407 -13.85791 -13.41195 -13.23428 -12.90146 -12.85514 -12.78138 -12.70205 -12.51668 -12.26973 -12.05613 -11.98744 -11.82828 -11.53185 -11.44254 -11.25562 -11.00287 -10.74350 -10.69589 -10.55914 -9.90632 -9.84185 -9.59007 -9.47828 -9.18652 -9.00428 -8.92365 -8.49049 -6.90747 -6.28189 -3.99754 0.98225 2.75748 2.90089 2.98294 2.99145 3.31957 3.35438 3.51095 3.67034 4.27326 4.33899 4.36302 4.39584 4.40900 4.71718 4.77330 4.80277 4.82160 4.94888 4.97393 5.00564 5.10962 5.13668 5.14558 5.18878 5.24599 5.32581 5.35182 5.45318 5.47683 5.48771 5.67332 5.70312 5.75506 5.77764 5.82449 5.98050 6.02856 6.07606 6.10337 6.13470 6.17884 6.28155 6.60943 7.23966 7.64629 7.94877 7.98108 8.42476 8.51989 9.18083 10.81053 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.001677 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.197190 B =16696.058218 C =16971.305058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.029 4.029 3 C -0.129 4.129 4 C -0.241 4.241 5 C 0.545 3.455 6 O -0.539 6.539 7 N -0.725 5.725 8 C 0.145 3.855 9 C -0.124 4.124 10 C -0.127 4.127 11 C 0.146 3.854 12 N -0.733 5.733 13 C 0.532 3.468 14 O -0.520 6.520 15 C -0.125 4.125 16 S -0.142 6.142 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.122 4.122 26 C -0.121 4.121 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.125 0.875 34 H 0.399 0.601 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.399 0.601 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 30.457 -16.032 35.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.031 4.031 3 C -0.185 4.185 4 C -0.262 4.262 5 C 0.335 3.665 6 O -0.419 6.419 7 N -0.376 5.376 8 C 0.040 3.960 9 C -0.163 4.163 10 C -0.167 4.167 11 C 0.041 3.959 12 N -0.387 5.387 13 C 0.318 3.682 14 O -0.394 6.394 15 C -0.275 4.275 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.161 4.161 26 C -0.160 4.160 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.143 0.857 34 H 0.233 0.767 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.233 0.767 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.181 30.839 -14.368 34.992 hybrid contribution -0.341 -0.760 -0.676 1.073 sum 7.839 30.080 -15.044 34.533 Atomic orbital electron populations 1.21172 0.90833 1.02469 1.03760 1.22595 0.96963 0.94478 0.89056 1.21024 1.00159 0.94438 1.02907 1.22357 1.00209 0.92073 1.11566 1.18566 0.86965 0.84242 0.76691 1.90774 1.15099 1.87582 1.48401 1.45989 1.12761 1.05607 1.73203 1.21039 0.96950 0.82152 0.95842 1.21860 1.01283 0.97417 0.95782 1.21894 0.99285 0.93575 1.01906 1.20936 0.97052 0.83105 0.94823 1.46032 1.45640 1.21875 1.25116 1.20276 0.82199 0.84888 0.80877 1.90693 1.34750 1.73021 1.40940 1.23290 1.03156 0.96231 1.04862 1.84779 1.57934 1.24138 1.24742 1.22323 1.27358 1.04748 1.12487 0.89404 1.24710 0.95071 0.93859 0.97636 1.69940 1.38578 1.09456 1.33738 0.86734 0.83090 0.78882 0.83140 1.19218 1.19948 1.15936 1.21745 1.01512 0.97018 0.95787 1.21738 0.99754 0.93867 1.00600 0.90175 0.92659 0.89226 0.90390 0.90775 0.91040 0.85730 0.76708 0.89285 0.91547 0.91195 0.91560 0.90716 0.89377 0.76726 0.88522 0.88495 0.91956 0.90997 0.90555 0.90856 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 8.46 36.01 0.30 -0.66 16 2 C -0.03 -0.19 6.11 -101.17 -0.62 -0.81 16 3 C -0.13 -0.49 10.01 36.00 0.36 -0.13 16 4 C -0.24 -1.65 9.62 -37.80 -0.36 -2.01 16 5 C 0.55 5.04 7.58 -12.66 -0.10 4.94 16 6 O -0.54 -6.75 12.94 5.27 0.07 -6.68 16 7 N -0.73 -5.19 5.07 -54.98 -0.28 -5.47 16 8 C 0.14 1.16 2.45 -67.93 -0.17 1.00 16 9 C -0.12 -1.22 5.49 -26.73 -0.15 -1.36 16 10 C -0.13 -1.41 5.49 -26.73 -0.15 -1.56 16 11 C 0.15 1.57 2.45 -67.93 -0.17 1.40 16 12 N -0.73 -9.07 5.08 -53.80 -0.27 -9.34 16 13 C 0.53 9.31 7.81 -10.99 -0.09 9.23 16 14 O -0.52 -11.07 15.52 5.56 0.09 -10.98 16 15 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 16 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 17 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 18 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 19 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.66 13.97 55.49 0.78 -25.89 16 21 Si 0.86 21.89 27.74 -169.99 -4.72 17.18 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 25 C -0.12 -0.90 5.39 -26.70 -0.14 -1.04 16 26 C -0.12 -0.76 5.40 -26.70 -0.14 -0.91 16 27 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 28 H 0.05 0.32 8.09 -51.93 -0.42 -0.10 16 29 H 0.09 0.86 6.14 -51.93 -0.32 0.54 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.25 8.12 -51.93 -0.42 -0.18 16 32 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 33 H 0.12 0.55 8.06 -52.49 -0.42 0.12 16 34 H 0.40 1.81 8.59 -40.82 -0.35 1.46 16 35 H 0.09 0.86 7.58 -51.93 -0.39 0.47 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 41 H 0.40 3.81 8.60 -40.82 -0.35 3.46 16 42 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 43 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 44 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 402.56 15.07 6.07 6.07 Total: -1.00 -35.71 402.56 -9.38 -45.08 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -8.14 Total: 1.82 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -0.98 Total: -6.17 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.22 Total: -40.70 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.15 Total: -17.66 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.72 Total: 17.18 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.71 -9.38 -45.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526290866.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.929 kcal (2) G-P(sol) polarization free energy of solvation -35.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds