Wall clock time and date at job start Sat Apr 11 2020 06:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46832 * 2 1 4 4 C 1.53004 * 109.47056 * 119.99255 * 2 1 3 5 5 H 1.09000 * 109.46662 * 60.00272 * 4 2 1 6 6 C 1.52996 * 109.47336 * 180.02562 * 4 2 1 7 7 N 1.46498 * 109.47059 * 175.00083 * 6 4 2 8 8 C 1.34777 * 119.99828 * 179.72339 * 7 6 4 9 9 O 1.21613 * 119.99962 * 0.28066 * 8 7 6 10 10 C 1.47108 * 120.00078 * 180.27699 * 8 7 6 11 11 C 1.32614 * 124.61965 * 179.69908 * 10 8 7 12 12 C 1.51112 * 110.75425 * 179.84401 * 11 10 8 13 13 C 1.54572 * 104.90269 * 343.80768 * 12 11 10 14 14 C 1.51103 * 124.61862 * 0.02562 * 10 8 7 15 15 N 1.46494 * 109.47171 * 300.00663 * 4 2 1 16 16 C 1.34779 * 120.00531 * 84.99693 * 15 4 2 17 17 O 1.21277 * 119.99526 * 0.02562 * 16 15 4 18 18 C 1.50699 * 120.00383 * 179.97438 * 16 15 4 19 19 S 1.80991 * 109.47264 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00167 * 180.02562 * 19 18 16 21 21 H 1.08008 * 119.99869 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00362 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99971 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99847 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47271 * 89.99487 * 24 22 20 26 26 H 1.48503 * 109.47435 * 209.99807 * 24 22 20 27 27 H 1.48504 * 109.47113 * 329.99757 * 24 22 20 28 28 H 1.08994 * 109.46929 * 300.00406 * 1 2 3 29 29 H 1.08995 * 109.46731 * 60.00655 * 1 2 3 30 30 H 1.09000 * 109.47163 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47368 * 239.99294 * 2 1 3 32 32 H 1.09001 * 109.46736 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46928 * 299.99225 * 3 2 1 34 34 H 1.08994 * 109.47695 * 60.00063 * 3 2 1 35 35 H 1.09004 * 109.47066 * 55.00351 * 6 4 2 36 36 H 1.08994 * 109.46974 * 295.00498 * 6 4 2 37 37 H 0.97001 * 120.00384 * 0.02562 * 7 6 4 38 38 H 1.08005 * 124.62186 * 0.02562 * 11 10 8 39 39 H 1.09000 * 110.51549 * 224.84822 * 12 11 10 40 40 H 1.09002 * 110.14780 * 102.57831 * 12 11 10 41 41 H 1.09005 * 110.98314 * 266.70775 * 13 12 11 42 42 H 1.09000 * 110.98349 * 142.91303 * 13 12 11 43 43 H 1.09007 * 110.36799 * 315.43424 * 14 10 8 44 44 H 1.08997 * 110.37111 * 77.64305 * 14 10 8 45 45 H 0.97009 * 119.99912 * 264.99313 * 15 4 2 46 46 H 1.09001 * 109.46793 * 300.00372 * 18 16 15 47 47 H 1.09005 * 109.46880 * 59.99506 * 18 16 15 48 48 H 0.97007 * 119.99404 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6767 -1.7488 1.2494 6 6 3.5700 -0.7206 1.2498 7 7 4.0582 -1.3042 2.5017 8 6 5.3832 -1.4129 2.7228 9 8 6.1736 -1.0219 1.8853 10 6 5.8735 -2.0045 3.9773 11 6 7.1535 -2.1610 4.2868 12 6 7.3010 -2.7961 5.6500 13 6 5.9160 -2.6330 6.3165 14 6 4.9872 -2.5231 5.0857 15 7 1.5516 -0.0305 2.4454 16 6 0.3296 -0.3162 2.9369 17 8 -0.3655 -1.1455 2.3892 18 6 -0.1726 0.3938 4.1676 19 16 -1.8316 -0.2045 4.5747 20 6 -2.1633 0.7649 6.0081 21 1 -1.4253 1.4665 6.3683 22 6 -3.3731 0.6270 6.6745 23 7 -3.6206 1.3509 7.7457 24 14 -4.6492 -0.5868 6.0521 25 1 -4.4294 -1.9083 6.6929 26 1 -6.0084 -0.0929 6.3896 27 1 -4.5243 -0.7244 4.5787 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8898 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.9330 0.3033 1.1604 36 1 3.9337 -1.3098 0.4080 37 1 3.4278 -1.6164 3.1696 38 1 7.9781 -1.8711 3.6523 39 1 8.0651 -2.2798 6.2312 40 1 7.5506 -3.8522 5.5471 41 1 5.8768 -1.7246 6.9179 42 1 5.6663 -3.5078 6.9169 43 1 4.1770 -1.8212 5.2835 44 1 4.5847 -3.5015 4.8234 45 1 2.1077 0.6326 2.8837 46 1 0.5000 0.1946 5.0019 47 1 -0.2091 1.4667 3.9786 48 1 -4.4660 1.2542 8.2116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001532709567.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:10 Heat of formation + Delta-G solvation = -74.886166 kcal Electronic energy + Delta-G solvation = -27473.111283 eV Core-core repulsion = 23653.821493 eV Total energy + Delta-G solvation = -3819.289790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.54425 -39.77936 -38.06320 -36.94327 -34.51375 -33.05666 -32.47381 -30.36762 -29.54369 -28.89049 -27.94539 -27.06979 -25.64760 -23.83382 -22.10835 -21.11940 -20.93262 -19.78880 -19.06790 -17.90443 -17.46918 -16.73152 -16.47620 -16.08309 -15.95335 -15.49429 -15.20167 -15.00688 -14.59555 -14.36114 -13.96152 -13.86307 -13.40045 -13.20615 -13.09197 -13.03426 -12.83348 -12.70302 -12.37022 -12.28678 -12.01912 -11.99311 -11.66886 -11.57280 -11.50610 -11.37916 -11.30322 -11.04594 -10.89586 -10.80292 -10.60229 -10.18365 -9.89713 -9.57924 -9.42683 -9.18655 -9.05644 -8.99860 -8.54714 -6.95936 -6.32589 -4.04580 1.07593 2.68649 2.85561 2.94395 3.03521 3.26631 3.30435 3.46627 3.60807 4.14102 4.20805 4.29167 4.33309 4.64690 4.67302 4.68855 4.76130 4.81003 4.91230 4.96970 5.06595 5.18925 5.21537 5.25144 5.31901 5.35835 5.44338 5.46739 5.53636 5.62164 5.64643 5.69486 5.75341 5.82404 5.83370 5.94219 5.95567 5.95904 6.01749 6.14954 6.20536 6.20865 6.48343 6.52548 7.23074 7.52064 7.90399 7.95445 8.37974 8.42210 9.13549 10.76674 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009600 B = 0.003099 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.924787 B = 9033.121319 C =11353.801903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 C -0.151 4.151 4 C 0.140 3.860 5 H 0.096 0.904 6 C 0.109 3.891 7 N -0.723 5.723 8 C 0.567 3.433 9 O -0.546 6.546 10 C -0.196 4.196 11 C -0.072 4.072 12 C -0.108 4.108 13 C -0.123 4.123 14 C -0.093 4.093 15 N -0.732 5.732 16 C 0.532 3.468 17 O -0.510 6.510 18 C -0.126 4.126 19 S -0.139 6.139 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.405 0.595 38 H 0.137 0.863 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.399 0.601 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.210 -5.777 -9.642 23.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 C -0.208 4.208 4 C 0.035 3.965 5 H 0.114 0.886 6 C -0.015 4.015 7 N -0.375 5.375 8 C 0.356 3.644 9 O -0.425 6.425 10 C -0.199 4.199 11 C -0.091 4.091 12 C -0.145 4.145 13 C -0.160 4.160 14 C -0.131 4.131 15 N -0.387 5.387 16 C 0.318 3.682 17 O -0.384 6.384 18 C -0.276 4.276 19 S 0.088 5.912 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.241 0.759 38 H 0.155 0.845 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.234 0.766 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.446 -6.832 -11.014 23.369 hybrid contribution 0.070 0.831 1.118 1.395 sum 19.516 -6.001 -9.896 22.690 Atomic orbital electron populations 1.21869 0.93427 1.02871 1.01568 1.21460 0.97496 0.96486 0.96772 1.21915 1.00609 0.96002 1.02320 1.21234 0.91417 0.98163 0.85721 0.88623 1.21785 0.92800 0.99916 0.86975 1.45899 1.07115 1.63515 1.20990 1.17994 0.82054 0.78229 0.86172 1.90791 1.55538 1.49639 1.46484 1.21830 0.96579 1.05270 0.96193 1.24066 0.96444 0.92208 0.96420 1.21501 0.98625 1.01116 0.93265 1.22427 0.93839 1.02853 0.96929 1.21271 0.97907 1.01440 0.92445 1.46055 1.18428 1.44496 1.29725 1.20212 0.80628 0.82482 0.84865 1.90716 1.55303 1.32790 1.59626 1.23293 1.03310 1.03464 0.97569 1.84774 1.12639 1.56497 1.37333 1.22316 1.06560 1.26713 1.11405 0.89440 1.24714 0.97396 0.95311 0.93869 1.69941 1.24784 1.39208 1.17715 0.86740 0.81184 0.81667 0.82274 1.19223 1.19959 1.15921 0.92053 0.93507 0.91743 0.90444 0.92561 0.92535 0.92287 0.90235 0.90015 0.75896 0.84515 0.90118 0.89636 0.90593 0.90320 0.90570 0.90135 0.76639 0.88652 0.88604 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 7.72 37.16 0.29 -1.46 16 2 C -0.10 -0.98 2.80 -90.61 -0.25 -1.24 16 3 C -0.15 -1.32 8.69 37.16 0.32 -1.00 16 4 C 0.14 1.36 2.16 -67.93 -0.15 1.21 16 5 H 0.10 1.08 7.58 -51.93 -0.39 0.68 16 6 C 0.11 0.97 5.01 -4.04 -0.02 0.95 16 7 N -0.72 -6.75 5.38 -61.49 -0.33 -7.08 16 8 C 0.57 6.38 7.79 -12.66 -0.10 6.28 16 9 O -0.55 -7.91 16.77 5.27 0.09 -7.82 16 10 C -0.20 -1.83 6.09 -102.73 -0.63 -2.45 16 11 C -0.07 -0.59 10.43 -36.01 -0.38 -0.97 16 12 C -0.11 -0.66 6.80 -26.86 -0.18 -0.84 16 13 C -0.12 -0.80 7.17 -25.07 -0.18 -0.98 16 14 C -0.09 -0.72 6.02 -26.85 -0.16 -0.88 16 15 N -0.73 -7.87 3.64 -53.81 -0.20 -8.06 16 16 C 0.53 8.18 6.20 -10.99 -0.07 8.11 16 17 O -0.51 -9.50 12.99 5.56 0.07 -9.43 16 18 C -0.13 -2.23 6.16 36.01 0.22 -2.01 16 19 S -0.14 -3.34 18.55 -107.50 -1.99 -5.33 16 20 C -0.52 -14.61 10.04 30.94 0.31 -14.30 16 21 H 0.09 2.56 8.03 -52.48 -0.42 2.14 16 22 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 23 N -0.88 -26.13 13.97 55.49 0.78 -25.35 16 24 Si 0.86 21.31 27.74 -169.99 -4.71 16.60 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 28 H 0.06 0.91 5.77 -51.93 -0.30 0.61 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.90 7.53 -51.93 -0.39 0.51 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.44 6.32 -51.93 -0.33 0.11 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.56 7.60 -51.93 -0.39 0.16 16 35 H 0.08 0.71 6.17 -51.93 -0.32 0.39 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.41 3.49 7.14 -40.82 -0.29 3.20 16 38 H 0.14 1.13 8.03 -52.48 -0.42 0.71 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.58 7.83 -51.93 -0.41 0.17 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.40 3.58 8.60 -40.82 -0.35 3.23 16 46 H 0.10 1.57 8.14 -51.91 -0.42 1.15 16 47 H 0.10 1.62 8.14 -51.91 -0.42 1.20 16 48 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 397.06 15.07 5.98 5.98 Total: -1.00 -33.66 397.06 -9.21 -42.87 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -7.83 Total: 4.56 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.07 Total: -6.93 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.25 Total: -40.49 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.16 Total: -17.25 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.60 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -1.99 Total: -5.33 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.66 -9.21 -42.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532709567.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.017 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds