Wall clock time and date at job start Sat Apr 11 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46832 * 2 1 4 4 C 1.53004 * 109.47056 * 119.99255 * 2 1 3 5 5 H 1.09000 * 109.46662 * 60.00272 * 4 2 1 6 6 C 1.52996 * 109.47336 * 180.02562 * 4 2 1 7 7 N 1.46498 * 109.47059 * 175.00083 * 6 4 2 8 8 C 1.34777 * 119.99828 * 179.72339 * 7 6 4 9 9 O 1.21613 * 119.99962 * 0.28066 * 8 7 6 10 10 C 1.47108 * 120.00078 * 180.27699 * 8 7 6 11 11 C 1.32614 * 124.61965 * 179.69908 * 10 8 7 12 12 C 1.51112 * 110.75425 * 179.84401 * 11 10 8 13 13 C 1.54572 * 104.90269 * 343.80768 * 12 11 10 14 14 C 1.51103 * 124.61862 * 0.02562 * 10 8 7 15 15 N 1.46494 * 109.47171 * 300.00663 * 4 2 1 16 16 C 1.34779 * 120.00531 * 84.99693 * 15 4 2 17 17 O 1.21277 * 119.99526 * 0.02562 * 16 15 4 18 18 C 1.50699 * 120.00383 * 179.97438 * 16 15 4 19 19 S 1.80991 * 109.47264 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00167 * 180.02562 * 19 18 16 21 21 H 1.08008 * 119.99869 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00362 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99971 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99847 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47271 * 89.99487 * 24 22 20 26 26 H 1.48503 * 109.47435 * 209.99807 * 24 22 20 27 27 H 1.48504 * 109.47113 * 329.99757 * 24 22 20 28 28 H 1.08994 * 109.46929 * 300.00406 * 1 2 3 29 29 H 1.08995 * 109.46731 * 60.00655 * 1 2 3 30 30 H 1.09000 * 109.47163 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47368 * 239.99294 * 2 1 3 32 32 H 1.09001 * 109.46736 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46928 * 299.99225 * 3 2 1 34 34 H 1.08994 * 109.47695 * 60.00063 * 3 2 1 35 35 H 1.09004 * 109.47066 * 55.00351 * 6 4 2 36 36 H 1.08994 * 109.46974 * 295.00498 * 6 4 2 37 37 H 0.97001 * 120.00384 * 0.02562 * 7 6 4 38 38 H 1.08005 * 124.62186 * 0.02562 * 11 10 8 39 39 H 1.09000 * 110.51549 * 224.84822 * 12 11 10 40 40 H 1.09002 * 110.14780 * 102.57831 * 12 11 10 41 41 H 1.09005 * 110.98314 * 266.70775 * 13 12 11 42 42 H 1.09000 * 110.98349 * 142.91303 * 13 12 11 43 43 H 1.09007 * 110.36799 * 315.43424 * 14 10 8 44 44 H 1.08997 * 110.37111 * 77.64305 * 14 10 8 45 45 H 0.97009 * 119.99912 * 264.99313 * 15 4 2 46 46 H 1.09001 * 109.46793 * 300.00372 * 18 16 15 47 47 H 1.09005 * 109.46880 * 59.99506 * 18 16 15 48 48 H 0.97007 * 119.99404 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6767 -1.7488 1.2494 6 6 3.5700 -0.7206 1.2498 7 7 4.0582 -1.3042 2.5017 8 6 5.3832 -1.4129 2.7228 9 8 6.1736 -1.0219 1.8853 10 6 5.8735 -2.0045 3.9773 11 6 7.1535 -2.1610 4.2868 12 6 7.3010 -2.7961 5.6500 13 6 5.9160 -2.6330 6.3165 14 6 4.9872 -2.5231 5.0857 15 7 1.5516 -0.0305 2.4454 16 6 0.3296 -0.3162 2.9369 17 8 -0.3655 -1.1455 2.3892 18 6 -0.1726 0.3938 4.1676 19 16 -1.8316 -0.2045 4.5747 20 6 -2.1633 0.7649 6.0081 21 1 -1.4253 1.4665 6.3683 22 6 -3.3731 0.6270 6.6745 23 7 -3.6206 1.3509 7.7457 24 14 -4.6492 -0.5868 6.0521 25 1 -4.4294 -1.9083 6.6929 26 1 -6.0084 -0.0929 6.3896 27 1 -4.5243 -0.7244 4.5787 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8898 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.9330 0.3033 1.1604 36 1 3.9337 -1.3098 0.4080 37 1 3.4278 -1.6164 3.1696 38 1 7.9781 -1.8711 3.6523 39 1 8.0651 -2.2798 6.2312 40 1 7.5506 -3.8522 5.5471 41 1 5.8768 -1.7246 6.9179 42 1 5.6663 -3.5078 6.9169 43 1 4.1770 -1.8212 5.2835 44 1 4.5847 -3.5015 4.8234 45 1 2.1077 0.6326 2.8837 46 1 0.5000 0.1946 5.0019 47 1 -0.2091 1.4667 3.9786 48 1 -4.4660 1.2542 8.2116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001532709567.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:09 Heat of formation + Delta-G solvation = -96.939849 kcal Electronic energy + Delta-G solvation = -27474.067603 eV Core-core repulsion = 23653.821493 eV Total energy + Delta-G solvation = -3820.246109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.48713 -40.75039 -38.78125 -37.96218 -35.36968 -34.66224 -34.14646 -31.30961 -30.51842 -29.62624 -28.75115 -27.96435 -27.77015 -24.67249 -22.86247 -22.21637 -21.57152 -20.70014 -20.05358 -19.64717 -18.22108 -17.95623 -17.37391 -17.18351 -17.02936 -16.74315 -16.47224 -16.04848 -15.75519 -15.44313 -15.31304 -14.91870 -14.71181 -14.60502 -14.03559 -13.79923 -13.77390 -13.61315 -13.38814 -13.32455 -13.02715 -12.94609 -12.93946 -12.62729 -12.60220 -12.59236 -12.27765 -12.08539 -12.01807 -11.87501 -11.72135 -11.62413 -11.15960 -11.06625 -10.89444 -10.50720 -10.24728 -10.06510 -9.83808 -8.96061 -8.50533 -6.20128 0.36183 1.01055 1.31961 1.47583 1.56912 1.62365 2.08872 2.22415 2.25025 2.30807 2.73772 2.88111 3.49610 3.52349 3.63646 3.86850 3.92051 3.99261 4.08212 4.18337 4.19039 4.26154 4.30980 4.40537 4.50241 4.58794 4.69744 4.75081 4.79460 4.80128 4.88064 4.90588 4.96168 5.04169 5.05511 5.15522 5.16998 5.29411 5.33832 5.37798 5.39212 5.49809 5.53887 5.55450 5.71644 6.12800 6.43211 6.46904 6.95017 7.12814 7.23554 8.61977 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009600 B = 0.003099 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.924787 B = 9033.121319 C =11353.801903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 C -0.148 4.148 4 C 0.148 3.852 5 H 0.085 0.915 6 C 0.116 3.884 7 N -0.716 5.716 8 C 0.564 3.436 9 O -0.584 6.584 10 C -0.217 4.217 11 C -0.065 4.065 12 C -0.104 4.104 13 C -0.123 4.123 14 C -0.092 4.092 15 N -0.709 5.709 16 C 0.542 3.458 17 O -0.544 6.544 18 C -0.114 4.114 19 S -0.167 6.167 20 C -0.529 4.529 21 H 0.060 0.940 22 C 0.045 3.955 23 N -0.919 5.919 24 Si 0.914 3.086 25 H -0.262 1.262 26 H -0.262 1.262 27 H -0.235 1.235 28 H 0.035 0.965 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.410 0.590 38 H 0.134 0.866 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.412 0.588 46 H 0.112 0.888 47 H 0.106 0.894 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.563 -6.527 -10.407 24.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.117 4.117 3 C -0.205 4.205 4 C 0.043 3.957 5 H 0.103 0.897 6 C -0.008 4.008 7 N -0.367 5.367 8 C 0.354 3.646 9 O -0.466 6.466 10 C -0.220 4.220 11 C -0.085 4.085 12 C -0.141 4.141 13 C -0.160 4.160 14 C -0.129 4.129 15 N -0.363 5.363 16 C 0.327 3.673 17 O -0.420 6.420 18 C -0.265 4.265 19 S 0.060 5.940 20 C -0.677 4.677 21 H 0.078 0.922 22 C -0.160 4.160 23 N -0.557 5.557 24 Si 0.736 3.264 25 H -0.186 1.186 26 H -0.187 1.187 27 H -0.159 1.159 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.246 0.754 38 H 0.151 0.849 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.249 0.751 46 H 0.130 0.870 47 H 0.125 0.875 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.817 -7.565 -11.773 25.083 hybrid contribution -0.188 1.117 1.309 1.731 sum 20.629 -6.449 -10.464 24.013 Atomic orbital electron populations 1.21794 0.95446 1.01333 1.00734 1.21443 0.95517 0.97479 0.97285 1.21890 1.01446 0.94991 1.02208 1.21243 0.91924 0.97436 0.85090 0.89682 1.21752 0.91619 1.00357 0.87034 1.45863 1.06778 1.62912 1.21129 1.18309 0.82145 0.77727 0.86409 1.90766 1.56413 1.51570 1.47842 1.21885 0.97393 1.06590 0.96127 1.24329 0.96023 0.90921 0.97243 1.21547 0.98826 1.01818 0.91905 1.22459 0.93706 1.03355 0.96511 1.21281 0.97841 1.01391 0.92392 1.45786 1.16808 1.44037 1.29657 1.19715 0.81623 0.81910 0.84009 1.90719 1.56569 1.34370 1.60392 1.23286 0.99565 1.04134 0.99540 1.84653 1.17754 1.56309 1.35326 1.22492 1.05997 1.26417 1.12752 0.92162 1.25565 0.99401 0.96969 0.94080 1.70026 1.25753 1.40873 1.19027 0.85871 0.79196 0.79657 0.81669 1.18617 1.18690 1.15916 0.94587 0.92574 0.93620 0.88462 0.91154 0.92051 0.93106 0.89646 0.89447 0.75369 0.84868 0.88745 0.88287 0.90693 0.89211 0.90804 0.89848 0.75141 0.86988 0.87549 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 7.72 71.98 0.56 -2.70 16 2 C -0.10 -1.67 2.80 -10.79 -0.03 -1.70 16 3 C -0.15 -2.23 8.69 71.98 0.63 -1.60 16 4 C 0.15 2.61 2.16 44.99 0.10 2.70 16 5 H 0.09 1.79 7.58 -2.39 -0.02 1.77 16 6 C 0.12 1.82 5.01 86.38 0.43 2.26 16 7 N -0.72 -12.26 5.38 -466.72 -2.51 -14.77 16 8 C 0.56 12.13 7.79 86.57 0.67 12.80 16 9 O -0.58 -16.52 16.77 -4.07 -0.07 -16.59 16 10 C -0.22 -3.80 6.09 -18.57 -0.11 -3.91 16 11 C -0.07 -1.00 10.43 24.66 0.26 -0.74 16 12 C -0.10 -1.04 6.80 30.51 0.21 -0.83 16 13 C -0.12 -1.35 7.17 31.67 0.23 -1.12 16 14 C -0.09 -1.27 6.02 30.52 0.18 -1.09 16 15 N -0.71 -14.02 3.64 -442.55 -1.61 -15.63 16 16 C 0.54 16.07 6.20 87.66 0.54 16.61 16 17 O -0.54 -19.97 12.99 -3.02 -0.04 -20.01 16 18 C -0.11 -3.96 6.16 71.24 0.44 -3.52 16 19 S -0.17 -8.00 18.55 -56.49 -1.05 -9.05 16 20 C -0.53 -29.98 10.04 67.95 0.68 -29.30 16 21 H 0.06 3.62 8.03 -2.91 -0.02 3.60 16 22 C 0.05 2.60 5.50 84.86 0.47 3.07 16 23 N -0.92 -55.27 13.97 21.65 0.30 -54.97 16 24 Si 0.91 44.08 27.74 68.60 1.90 45.98 16 25 H -0.26 -12.26 7.11 99.48 0.71 -11.56 16 26 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.24 -11.27 6.74 99.48 0.67 -10.59 16 28 H 0.03 1.04 5.77 -2.39 -0.01 1.02 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 1.25 7.53 -2.39 -0.02 1.24 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 0.88 6.32 -2.39 -0.02 0.87 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 0.85 7.60 -2.39 -0.02 0.83 16 35 H 0.09 1.31 6.17 -2.38 -0.01 1.29 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.41 6.39 7.14 -92.71 -0.66 5.73 16 38 H 0.13 2.09 8.03 -2.91 -0.02 2.06 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 1.03 7.83 -2.38 -0.02 1.01 16 44 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.41 6.44 8.60 -92.70 -0.80 5.64 16 46 H 0.11 3.53 8.14 -2.40 -0.02 3.51 16 47 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 48 H 0.28 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -73.66 397.06 1.66 -72.01 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -0.52 Total: 22.10 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 5.25 Total: -9.07 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -3.82 Total: -85.37 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.11 Total: -36.60 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.90 Total: 45.98 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.05 Total: -9.05 kcal Total: -73.66 1.66 -72.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532709567.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.930 kcal (2) G-P(sol) polarization free energy of solvation -73.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds