Wall clock time and date at job start Sat Apr 11 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46846 * 2 1 4 4 C 1.52999 * 109.47179 * 120.00024 * 2 1 3 5 5 H 1.08997 * 109.46828 * 299.99992 * 4 2 1 6 6 C 1.53006 * 109.46811 * 180.02562 * 4 2 1 7 7 N 1.46500 * 109.46998 * 184.99974 * 6 4 2 8 8 C 1.34769 * 120.00237 * 180.02562 * 7 6 4 9 9 O 1.21282 * 119.99854 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.00461 * 180.02562 * 8 7 6 11 11 H 1.09002 * 115.55004 * 325.72118 * 10 8 7 12 12 C 1.53004 * 117.49964 * 111.38670 * 10 8 7 13 13 C 1.52985 * 117.50270 * 180.02562 * 10 8 7 14 14 C 1.52999 * 138.59226 * 121.61855 * 13 10 8 15 15 C 1.52997 * 138.58839 * 23.40199 * 13 10 8 16 16 N 1.46493 * 109.47168 * 60.00108 * 4 2 1 17 17 C 1.34775 * 120.00149 * 275.00045 * 16 4 2 18 18 O 1.21281 * 119.99850 * 359.97438 * 17 16 4 19 19 C 1.50704 * 120.00045 * 180.02562 * 17 16 4 20 20 S 1.81000 * 109.46943 * 179.97438 * 19 17 16 21 21 C 1.76196 * 100.00079 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00217 * 359.97438 * 21 20 19 23 23 C 1.38802 * 120.00155 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99694 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99933 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46911 * 90.00496 * 25 23 21 27 27 H 1.48501 * 109.46934 * 210.00129 * 25 23 21 28 28 H 1.48493 * 109.47014 * 330.00324 * 25 23 21 29 29 H 1.09001 * 109.47165 * 299.99729 * 1 2 3 30 30 H 1.08998 * 109.47611 * 60.00231 * 1 2 3 31 31 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47165 * 240.00270 * 2 1 3 33 33 H 1.09002 * 109.47069 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47196 * 299.99650 * 3 2 1 35 35 H 1.08994 * 109.47635 * 60.00325 * 3 2 1 36 36 H 1.08993 * 109.46955 * 305.00200 * 6 4 2 37 37 H 1.09000 * 109.47050 * 65.00029 * 6 4 2 38 38 H 0.97010 * 119.99909 * 359.97438 * 7 6 4 39 39 H 1.08997 * 117.49598 * 214.98453 * 12 10 8 40 40 H 1.09002 * 117.49826 * 359.97438 * 12 10 8 41 41 H 1.08998 * 117.49016 * 336.59511 * 14 13 10 42 42 H 1.08997 * 117.50010 * 121.61684 * 14 13 10 43 43 H 1.09003 * 117.49659 * 238.38532 * 15 13 10 44 44 H 1.08998 * 117.49693 * 23.38355 * 15 13 10 45 45 H 0.97003 * 120.00120 * 95.00139 * 16 4 2 46 46 H 1.08997 * 109.46521 * 299.99329 * 19 17 16 47 47 H 1.08997 * 109.47445 * 59.99951 * 19 17 16 48 48 H 0.97004 * 120.00020 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7206 1.2495 7 7 4.0585 -1.5129 2.3809 8 6 5.3835 -1.6532 2.5831 9 8 6.1716 -1.1241 1.8282 10 6 5.8860 -2.4686 3.7466 11 1 5.2761 -2.4257 4.6491 12 6 6.5893 -3.7904 3.4316 13 6 7.4009 -2.5896 3.9226 14 6 8.4619 -2.2767 4.9796 15 6 8.6662 -1.8230 3.5327 16 7 1.5517 -2.1024 1.2492 17 6 0.3298 -2.3852 1.7425 18 8 -0.3654 -1.4963 2.1868 19 6 -0.1723 -3.8062 1.7430 20 16 -1.8313 -3.8596 2.4647 21 6 -2.1630 -5.5857 2.3421 22 1 -1.4253 -6.2482 1.9139 23 6 -3.3727 -6.0939 2.7947 24 7 -3.6201 -7.3834 2.7035 25 14 -4.6489 -4.9479 3.5347 26 1 -5.5450 -4.4464 2.4619 27 1 -5.4500 -5.6853 4.5445 28 1 -3.9661 -3.8011 4.1857 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.9336 -1.1546 0.3181 37 1 3.9329 0.3032 1.3392 38 1 3.4281 -1.9358 2.9849 39 1 6.4424 -4.6168 4.1270 40 1 6.6882 -4.0704 2.3828 41 1 8.2256 -1.5110 5.7184 42 1 9.0739 -3.1041 5.3387 43 1 9.4125 -2.3520 2.9400 44 1 8.5643 -0.7590 3.3194 45 1 2.1079 -2.8135 0.8942 46 1 -0.2089 -4.1788 0.7194 47 1 0.5003 -4.4290 2.3327 48 1 -4.4654 -7.7387 3.0202 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001532855059.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:18 Heat of formation + Delta-G solvation = -26.443074 kcal Electronic energy + Delta-G solvation = -27066.415264 eV Core-core repulsion = 23249.226124 eV Total energy + Delta-G solvation = -3817.189140 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.51529 -39.77114 -37.91134 -36.87539 -34.49281 -33.30675 -32.92280 -32.47624 -29.90749 -28.57117 -26.85088 -25.65548 -24.75974 -22.75022 -22.69679 -21.05330 -20.62767 -20.24519 -19.43867 -17.94748 -17.36018 -16.79902 -16.56131 -15.98055 -15.57210 -15.42718 -15.27268 -15.01919 -14.86890 -14.66213 -14.18126 -13.89885 -13.66955 -13.42652 -13.06808 -12.83166 -12.80244 -12.69495 -12.30798 -12.20127 -12.01445 -11.80031 -11.71758 -11.48611 -11.30735 -11.05160 -10.89714 -10.83796 -10.61429 -10.56658 -10.47009 -10.33754 -9.99517 -9.89813 -9.57676 -9.35536 -9.05849 -9.01106 -8.55000 -6.96244 -6.32653 -4.04708 2.21400 2.64889 2.74525 2.88775 3.24290 3.30235 3.37573 3.46354 3.48030 3.60035 3.93763 4.29013 4.31099 4.40449 4.46478 4.64625 4.70274 4.76263 4.82341 5.00490 5.06479 5.08191 5.10812 5.20767 5.22349 5.30285 5.32485 5.35409 5.37945 5.48999 5.58996 5.60859 5.61459 5.69327 5.71662 5.81816 5.85082 5.88371 5.95318 5.97849 6.13258 6.20423 6.43719 6.53515 7.20317 7.50835 7.90328 7.95655 8.37943 8.40947 9.13424 10.76600 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010797 B = 0.002651 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.754093 B =10559.018415 C =12657.489745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 C -0.150 4.150 4 C 0.140 3.860 5 H 0.096 0.904 6 C 0.112 3.888 7 N -0.726 5.726 8 C 0.542 3.458 9 O -0.536 6.536 10 C -0.144 4.144 11 H 0.125 0.875 12 C -0.098 4.098 13 C -0.201 4.201 14 C -0.130 4.130 15 C -0.113 4.113 16 N -0.735 5.735 17 C 0.532 3.468 18 O -0.510 6.510 19 C -0.126 4.126 20 S -0.139 6.139 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.406 0.594 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.400 0.600 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.497 12.602 -0.757 24.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 C -0.207 4.207 4 C 0.035 3.965 5 H 0.114 0.886 6 C -0.012 4.012 7 N -0.378 5.378 8 C 0.329 3.671 9 O -0.412 6.412 10 C -0.165 4.165 11 H 0.143 0.857 12 C -0.135 4.135 13 C -0.202 4.202 14 C -0.167 4.167 15 C -0.150 4.150 16 N -0.389 5.389 17 C 0.318 3.682 18 O -0.384 6.384 19 C -0.276 4.276 20 S 0.087 5.913 21 C -0.670 4.670 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.516 5.516 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.241 0.759 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.234 0.766 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.760 14.326 -0.530 25.229 hybrid contribution -0.123 -1.434 -0.145 1.447 sum 20.637 12.892 -0.675 24.342 Atomic orbital electron populations 1.21872 0.93424 1.02835 1.01613 1.21478 0.97521 0.96009 0.97187 1.21901 1.00807 0.95639 1.02388 1.21257 0.91445 0.83618 1.00221 0.88614 1.21744 0.92741 0.96986 0.89704 1.45951 1.07083 1.53760 1.31049 1.19694 0.81955 0.80317 0.85166 1.90697 1.55431 1.48002 1.47097 1.21972 0.94298 1.01218 0.99001 0.85703 1.22682 0.98569 0.89769 1.02516 1.21156 0.88518 1.02881 1.07654 1.22774 0.98696 1.02794 0.92407 1.22596 0.95487 1.00220 0.96716 1.46072 1.18483 1.08950 1.65406 1.20228 0.80615 0.90748 0.76599 1.90719 1.55304 1.47896 1.44485 1.23295 1.03332 0.95339 1.05662 1.84777 1.13317 1.13135 1.80074 1.22311 1.06540 0.90230 1.47893 0.89420 1.24719 0.97414 0.94913 0.94285 1.69935 1.24752 1.11743 1.45200 0.86735 0.82475 0.82231 0.80391 1.19226 1.19954 1.15937 0.91658 0.93472 0.92158 0.90968 0.92460 0.92263 0.92303 0.90831 0.89783 0.75931 0.87344 0.88003 0.88516 0.88255 0.88529 0.88263 0.76610 0.88610 0.88550 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 7.72 37.16 0.29 -1.46 16 2 C -0.10 -0.98 2.69 -90.62 -0.24 -1.23 16 3 C -0.15 -1.22 8.84 37.16 0.33 -0.90 16 4 C 0.14 1.36 1.99 -67.93 -0.14 1.22 16 5 H 0.10 1.09 7.58 -51.93 -0.39 0.69 16 6 C 0.11 0.97 4.73 -4.04 -0.02 0.95 16 7 N -0.73 -6.40 5.39 -60.29 -0.32 -6.72 16 8 C 0.54 5.72 7.61 -10.99 -0.08 5.64 16 9 O -0.54 -7.38 16.25 5.56 0.09 -7.29 16 10 C -0.14 -1.25 6.19 -91.78 -0.57 -1.82 16 11 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 12 C -0.10 -0.77 10.24 -26.72 -0.27 -1.04 16 13 C -0.20 -1.78 5.05 -154.51 -0.78 -2.56 16 14 C -0.13 -0.91 10.53 -26.73 -0.28 -1.20 16 15 C -0.11 -0.96 10.16 -26.73 -0.27 -1.23 16 16 N -0.73 -7.90 4.41 -53.81 -0.24 -8.13 16 17 C 0.53 8.21 6.20 -10.98 -0.07 8.14 16 18 O -0.51 -9.55 12.99 5.56 0.07 -9.47 16 19 C -0.13 -2.24 6.16 36.01 0.22 -2.01 16 20 S -0.14 -3.36 18.55 -107.50 -1.99 -5.35 16 21 C -0.52 -14.62 10.04 30.94 0.31 -14.31 16 22 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 23 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 24 N -0.88 -26.14 13.97 55.49 0.78 -25.37 16 25 Si 0.86 21.34 27.74 -169.99 -4.72 16.63 16 26 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 29 H 0.06 0.91 7.53 -51.93 -0.39 0.52 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.89 5.77 -51.93 -0.30 0.60 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.42 6.55 -51.93 -0.34 0.08 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.74 6.71 -51.93 -0.35 0.40 16 38 H 0.41 3.25 8.14 -40.82 -0.33 2.92 16 39 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.40 3.51 8.60 -40.82 -0.35 3.16 16 46 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 47 H 0.10 1.59 8.14 -51.92 -0.42 1.16 16 48 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 405.10 15.07 6.10 6.10 Total: -1.00 -33.77 405.10 -9.85 -43.62 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.95 Total: 5.15 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -1.67 Total: -9.16 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.21 Total: -40.23 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.16 Total: -16.76 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.72 Total: 16.63 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -1.99 Total: -5.35 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.77 -9.85 -43.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532855059.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.178 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds