Wall clock time and date at job start Sat Apr 11 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46846 * 2 1 4 4 C 1.52999 * 109.47179 * 120.00024 * 2 1 3 5 5 H 1.08997 * 109.46828 * 299.99992 * 4 2 1 6 6 C 1.53006 * 109.46811 * 180.02562 * 4 2 1 7 7 N 1.46500 * 109.46998 * 184.99974 * 6 4 2 8 8 C 1.34769 * 120.00237 * 180.02562 * 7 6 4 9 9 O 1.21282 * 119.99854 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.00461 * 180.02562 * 8 7 6 11 11 H 1.09002 * 115.55004 * 325.72118 * 10 8 7 12 12 C 1.53004 * 117.49964 * 111.38670 * 10 8 7 13 13 C 1.52985 * 117.50270 * 180.02562 * 10 8 7 14 14 C 1.52999 * 138.59226 * 121.61855 * 13 10 8 15 15 C 1.52997 * 138.58839 * 23.40199 * 13 10 8 16 16 N 1.46493 * 109.47168 * 60.00108 * 4 2 1 17 17 C 1.34775 * 120.00149 * 275.00045 * 16 4 2 18 18 O 1.21281 * 119.99850 * 359.97438 * 17 16 4 19 19 C 1.50704 * 120.00045 * 180.02562 * 17 16 4 20 20 S 1.81000 * 109.46943 * 179.97438 * 19 17 16 21 21 C 1.76196 * 100.00079 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00217 * 359.97438 * 21 20 19 23 23 C 1.38802 * 120.00155 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99694 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99933 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46911 * 90.00496 * 25 23 21 27 27 H 1.48501 * 109.46934 * 210.00129 * 25 23 21 28 28 H 1.48493 * 109.47014 * 330.00324 * 25 23 21 29 29 H 1.09001 * 109.47165 * 299.99729 * 1 2 3 30 30 H 1.08998 * 109.47611 * 60.00231 * 1 2 3 31 31 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47165 * 240.00270 * 2 1 3 33 33 H 1.09002 * 109.47069 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47196 * 299.99650 * 3 2 1 35 35 H 1.08994 * 109.47635 * 60.00325 * 3 2 1 36 36 H 1.08993 * 109.46955 * 305.00200 * 6 4 2 37 37 H 1.09000 * 109.47050 * 65.00029 * 6 4 2 38 38 H 0.97010 * 119.99909 * 359.97438 * 7 6 4 39 39 H 1.08997 * 117.49598 * 214.98453 * 12 10 8 40 40 H 1.09002 * 117.49826 * 359.97438 * 12 10 8 41 41 H 1.08998 * 117.49016 * 336.59511 * 14 13 10 42 42 H 1.08997 * 117.50010 * 121.61684 * 14 13 10 43 43 H 1.09003 * 117.49659 * 238.38532 * 15 13 10 44 44 H 1.08998 * 117.49693 * 23.38355 * 15 13 10 45 45 H 0.97003 * 120.00120 * 95.00139 * 16 4 2 46 46 H 1.08997 * 109.46521 * 299.99329 * 19 17 16 47 47 H 1.08997 * 109.47445 * 59.99951 * 19 17 16 48 48 H 0.97004 * 120.00020 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7206 1.2495 7 7 4.0585 -1.5129 2.3809 8 6 5.3835 -1.6532 2.5831 9 8 6.1716 -1.1241 1.8282 10 6 5.8860 -2.4686 3.7466 11 1 5.2761 -2.4257 4.6491 12 6 6.5893 -3.7904 3.4316 13 6 7.4009 -2.5896 3.9226 14 6 8.4619 -2.2767 4.9796 15 6 8.6662 -1.8230 3.5327 16 7 1.5517 -2.1024 1.2492 17 6 0.3298 -2.3852 1.7425 18 8 -0.3654 -1.4963 2.1868 19 6 -0.1723 -3.8062 1.7430 20 16 -1.8313 -3.8596 2.4647 21 6 -2.1630 -5.5857 2.3421 22 1 -1.4253 -6.2482 1.9139 23 6 -3.3727 -6.0939 2.7947 24 7 -3.6201 -7.3834 2.7035 25 14 -4.6489 -4.9479 3.5347 26 1 -5.5450 -4.4464 2.4619 27 1 -5.4500 -5.6853 4.5445 28 1 -3.9661 -3.8011 4.1857 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.9336 -1.1546 0.3181 37 1 3.9329 0.3032 1.3392 38 1 3.4281 -1.9358 2.9849 39 1 6.4424 -4.6168 4.1270 40 1 6.6882 -4.0704 2.3828 41 1 8.2256 -1.5110 5.7184 42 1 9.0739 -3.1041 5.3387 43 1 9.4125 -2.3520 2.9400 44 1 8.5643 -0.7590 3.3194 45 1 2.1079 -2.8135 0.8942 46 1 -0.2089 -4.1788 0.7194 47 1 0.5003 -4.4290 2.3327 48 1 -4.4654 -7.7387 3.0202 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001532855059.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:17 Heat of formation + Delta-G solvation = -48.535741 kcal Electronic energy + Delta-G solvation = -27067.373274 eV Core-core repulsion = 23249.226124 eV Total energy + Delta-G solvation = -3818.147150 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.43403 -40.75208 -38.66920 -37.83445 -35.32245 -34.66599 -34.36552 -33.55854 -31.13093 -29.58352 -27.89088 -27.63387 -25.55153 -23.52409 -23.28273 -22.02536 -21.62162 -21.05382 -20.19708 -19.78607 -18.24692 -17.90418 -17.57593 -17.10761 -16.95940 -16.60299 -16.27910 -15.91698 -15.87879 -15.57971 -15.33530 -15.04341 -14.89912 -14.74545 -14.48588 -13.95306 -13.61806 -13.49341 -13.47647 -13.32446 -13.04617 -12.99741 -12.76556 -12.63352 -12.56108 -12.37575 -12.35768 -11.87284 -11.77164 -11.64125 -11.20740 -11.16271 -11.11075 -10.94947 -10.89332 -10.77628 -10.50763 -10.16009 -10.06211 -8.96358 -8.50585 -6.20203 1.00810 1.32003 1.43576 1.47332 1.56638 1.61274 1.97756 2.23194 2.26922 2.73013 2.73959 2.85722 2.87973 3.32751 3.50405 3.74281 3.82501 3.85633 3.93293 4.00937 4.10167 4.24794 4.27610 4.33224 4.47191 4.50862 4.58037 4.63675 4.68540 4.75032 4.77434 4.81494 4.81743 4.84935 4.98667 5.01152 5.02461 5.05064 5.18113 5.26619 5.29131 5.38929 5.46101 5.55213 5.71675 6.12928 6.44273 6.47234 6.94922 7.17375 7.23044 8.61856 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010797 B = 0.002651 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.754093 B =10559.018415 C =12657.489745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 C -0.146 4.146 4 C 0.148 3.852 5 H 0.084 0.916 6 C 0.120 3.880 7 N -0.718 5.718 8 C 0.541 3.459 9 O -0.572 6.572 10 C -0.150 4.150 11 H 0.141 0.859 12 C -0.090 4.090 13 C -0.225 4.225 14 C -0.113 4.113 15 C -0.127 4.127 16 N -0.711 5.711 17 C 0.541 3.459 18 O -0.544 6.544 19 C -0.114 4.114 20 S -0.169 6.169 21 C -0.528 4.528 22 H 0.061 0.939 23 C 0.044 3.956 24 N -0.918 5.918 25 Si 0.914 3.086 26 H -0.264 1.264 27 H -0.261 1.261 28 H -0.234 1.234 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.034 0.966 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.411 0.589 39 H 0.127 0.873 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.414 0.586 46 H 0.107 0.893 47 H 0.114 0.886 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.721 13.513 -0.508 26.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.117 4.117 3 C -0.203 4.203 4 C 0.043 3.957 5 H 0.102 0.898 6 C -0.004 4.004 7 N -0.370 5.370 8 C 0.328 3.672 9 O -0.451 6.451 10 C -0.170 4.170 11 H 0.159 0.841 12 C -0.127 4.127 13 C -0.226 4.226 14 C -0.149 4.149 15 C -0.164 4.164 16 N -0.365 5.365 17 C 0.327 3.673 18 O -0.421 6.421 19 C -0.265 4.265 20 S 0.057 5.943 21 C -0.676 4.676 22 H 0.079 0.921 23 C -0.161 4.161 24 N -0.557 5.557 25 Si 0.736 3.264 26 H -0.189 1.189 27 H -0.186 1.186 28 H -0.158 1.158 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.247 0.753 39 H 0.145 0.855 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.133 0.867 43 H 0.119 0.881 44 H 0.103 0.897 45 H 0.250 0.750 46 H 0.125 0.875 47 H 0.132 0.868 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 22.008 15.225 -0.290 26.763 hybrid contribution -0.367 -1.697 -0.315 1.764 sum 21.641 13.529 -0.605 25.528 Atomic orbital electron populations 1.21799 0.95448 1.00958 1.01120 1.21450 0.95544 0.97333 0.97396 1.21867 1.01578 0.94307 1.02576 1.21258 0.92070 0.82382 0.99974 0.89830 1.21679 0.91420 0.97343 0.89932 1.45908 1.06803 1.53298 1.30980 1.20026 0.81986 0.79951 0.85217 1.90682 1.56313 1.49624 1.48505 1.22037 0.94602 1.01547 0.98849 0.84093 1.22742 0.97535 0.89809 1.02597 1.21416 0.88664 1.03539 1.08975 1.22857 0.97431 1.03062 0.91568 1.22601 0.95925 0.99505 0.98346 1.45800 1.16852 1.10145 1.63687 1.19747 0.81632 0.89157 0.76780 1.90723 1.56599 1.48330 1.46451 1.23288 0.99515 0.97717 1.05955 1.84667 1.18458 1.09941 1.81196 1.22485 1.05974 0.92143 1.46963 0.92078 1.25573 0.99433 0.96274 0.94835 1.70019 1.25714 1.13368 1.46550 0.85868 0.80115 0.80451 0.79934 1.18908 1.18588 1.15786 0.93599 0.92519 0.94644 0.89723 0.91146 0.91588 0.92703 0.90255 0.89378 0.75268 0.85510 0.88658 0.87902 0.86664 0.88071 0.89703 0.74970 0.87480 0.86813 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 7.72 71.98 0.56 -2.71 16 2 C -0.10 -1.68 2.69 -10.80 -0.03 -1.71 16 3 C -0.15 -2.06 8.84 71.98 0.64 -1.42 16 4 C 0.15 2.59 1.99 44.99 0.09 2.67 16 5 H 0.08 1.77 7.58 -2.39 -0.02 1.75 16 6 C 0.12 1.81 4.73 86.38 0.41 2.22 16 7 N -0.72 -11.23 5.39 -463.06 -2.49 -13.72 16 8 C 0.54 10.63 7.61 87.66 0.67 11.30 16 9 O -0.57 -15.28 16.25 -3.04 -0.05 -15.33 16 10 C -0.15 -2.34 6.19 -11.54 -0.07 -2.41 16 11 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 12 C -0.09 -1.24 10.24 30.60 0.31 -0.93 16 13 C -0.23 -3.65 5.05 -52.18 -0.26 -3.91 16 14 C -0.11 -1.38 10.53 30.59 0.32 -1.06 16 15 C -0.13 -2.06 10.16 30.59 0.31 -1.75 16 16 N -0.71 -13.82 4.41 -442.54 -1.95 -15.77 16 17 C 0.54 15.97 6.20 87.66 0.54 16.52 16 18 O -0.54 -20.02 12.99 -3.03 -0.04 -20.06 16 19 C -0.11 -3.91 6.16 71.24 0.44 -3.47 16 20 S -0.17 -8.10 18.55 -56.49 -1.05 -9.15 16 21 C -0.53 -29.87 10.04 67.96 0.68 -29.19 16 22 H 0.06 3.66 8.03 -2.91 -0.02 3.64 16 23 C 0.04 2.54 5.50 84.86 0.47 3.01 16 24 N -0.92 -55.22 13.97 21.65 0.30 -54.92 16 25 Si 0.91 44.11 27.74 68.60 1.90 46.01 16 26 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 27 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 28 H -0.23 -11.16 6.74 99.48 0.67 -10.49 16 29 H 0.04 1.27 7.53 -2.39 -0.02 1.25 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.03 1.02 5.77 -2.39 -0.01 1.00 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 0.83 6.55 -2.39 -0.02 0.81 16 34 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.35 6.71 -2.39 -0.02 1.34 16 38 H 0.41 5.66 8.14 -92.70 -0.75 4.91 16 39 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 41 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.41 6.11 8.60 -92.71 -0.80 5.31 16 46 H 0.11 3.47 8.14 -2.40 -0.02 3.45 16 47 H 0.11 3.54 8.14 -2.40 -0.02 3.52 16 48 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -73.95 405.10 1.08 -72.88 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -0.62 Total: 22.90 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 5.07 Total: -12.86 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -4.14 Total: -84.41 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.09 Total: -35.38 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.90 Total: 46.01 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.05 Total: -9.15 kcal Total: -73.95 1.08 -72.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532855059.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.340 kcal (2) G-P(sol) polarization free energy of solvation -73.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds