Wall clock time and date at job start Sat Apr 11 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47236 * 2 1 4 4 C 1.53000 * 109.47031 * 120.00354 * 2 1 3 5 5 H 1.09007 * 109.46641 * 185.00337 * 4 2 1 6 6 C 1.52995 * 109.47023 * 304.99931 * 4 2 1 7 7 N 1.46495 * 109.47115 * 175.00361 * 6 4 2 8 8 C 1.34785 * 120.00259 * 179.97438 * 7 6 4 9 9 O 1.21281 * 119.99404 * 359.97438 * 8 7 6 10 10 C 1.50696 * 119.99885 * 179.97438 * 8 7 6 11 11 H 1.08995 * 115.55786 * 325.72598 * 10 8 7 12 12 C 1.53006 * 117.49457 * 111.39491 * 10 8 7 13 13 C 1.52991 * 59.99897 * 107.48914 * 12 10 8 14 14 C 1.52996 * 138.59073 * 130.89764 * 13 12 10 15 15 C 1.52999 * 138.58861 * 229.11305 * 13 12 10 16 16 N 1.46499 * 109.47070 * 65.00246 * 4 2 1 17 17 C 1.34777 * 120.00199 * 85.00207 * 16 4 2 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 4 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 4 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47506 * 89.99666 * 25 23 21 27 27 H 1.48498 * 109.47217 * 210.00061 * 25 23 21 28 28 H 1.48502 * 109.46767 * 329.99807 * 25 23 21 29 29 H 1.08997 * 109.46867 * 299.99472 * 1 2 3 30 30 H 1.09002 * 109.46819 * 60.00202 * 1 2 3 31 31 H 1.09004 * 109.46946 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46818 * 240.00162 * 2 1 3 33 33 H 1.09002 * 109.47200 * 300.00428 * 3 2 1 34 34 H 1.09010 * 109.46679 * 60.00117 * 3 2 1 35 35 H 1.08989 * 109.47504 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47321 * 295.00347 * 6 4 2 37 37 H 1.09000 * 109.47575 * 55.00163 * 6 4 2 38 38 H 0.97004 * 120.00478 * 359.97438 * 7 6 4 39 39 H 1.08998 * 117.50060 * 214.97606 * 12 10 8 40 40 H 1.08999 * 117.49835 * 359.97438 * 12 10 8 41 41 H 1.08997 * 117.49628 * 238.38047 * 14 13 12 42 42 H 1.08996 * 117.49823 * 23.39532 * 14 13 12 43 43 H 1.09007 * 117.49839 * 336.58867 * 15 13 12 44 44 H 1.08999 * 117.50274 * 121.58916 * 15 13 12 45 45 H 0.97000 * 119.99484 * 264.99304 * 16 4 2 46 46 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 47 47 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 48 48 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1264 -0.6443 1.2951 6 6 1.4300 -0.0764 2.4952 7 7 1.8228 -0.8398 3.6823 8 6 1.3996 -0.4538 4.9024 9 8 0.6940 0.5259 5.0174 10 6 1.8032 -1.2395 6.1233 11 1 1.8992 -2.3156 5.9794 12 6 2.7636 -0.5700 7.1084 13 6 1.2904 -0.7506 7.4793 14 6 0.4581 -1.2786 8.6495 15 6 0.1364 0.0856 8.0359 16 7 1.6525 -2.1329 1.1904 17 6 2.4223 -3.0159 0.5240 18 8 3.4357 -2.6418 -0.0275 19 6 2.0204 -4.4669 0.4583 20 16 3.2435 -5.3886 -0.5063 21 6 2.5452 -7.0041 -0.4220 22 1 1.6238 -7.1667 0.1175 23 6 3.1786 -8.0676 -1.0498 24 7 4.3008 -7.8692 -1.7087 25 14 2.4380 -9.7802 -0.9611 26 1 1.5123 -9.9792 -2.1051 27 1 3.5230 -10.7924 -1.0203 28 1 1.6899 -9.9305 0.3129 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.7896 0.9485 2.5870 37 1 0.3435 -0.0737 2.4081 38 1 2.3874 -1.6232 3.5903 39 1 3.4912 -1.2059 7.6129 40 1 3.1038 0.4384 6.8732 41 1 -0.2327 -2.0970 8.4469 42 1 0.9249 -1.2901 9.6343 43 1 0.3916 0.9717 8.6173 44 1 -0.7659 0.1651 7.4296 45 1 0.8419 -2.4320 1.6313 46 1 1.9702 -4.8760 1.4674 47 1 1.0434 -4.5520 -0.0173 48 1 4.7438 -8.6125 -2.1472 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001532855062.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:28 Heat of formation + Delta-G solvation = -27.852200 kcal Electronic energy + Delta-G solvation = -26954.562756 eV Core-core repulsion = 23137.312512 eV Total energy + Delta-G solvation = -3817.250244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.47064 -39.61482 -37.91233 -37.03659 -34.38884 -33.20865 -32.90130 -32.46330 -29.73540 -28.06273 -27.33925 -25.54774 -24.77387 -23.21116 -22.69140 -20.96103 -20.67235 -19.76434 -19.18769 -17.96579 -17.32147 -16.89151 -16.52292 -15.76205 -15.44275 -15.32685 -15.19167 -14.96531 -14.83683 -14.55858 -14.12259 -14.01769 -13.84978 -13.35282 -13.26365 -13.02085 -12.78013 -12.49484 -12.17144 -12.14427 -12.04874 -11.85052 -11.77023 -11.35299 -11.12336 -11.09447 -11.05874 -10.80161 -10.65256 -10.55616 -10.45718 -10.32672 -9.97176 -9.85418 -9.49920 -9.28348 -9.10758 -8.98188 -8.28420 -6.54299 -6.25389 -3.96234 2.23837 2.73301 2.95112 3.01666 3.19697 3.25133 3.28663 3.38568 3.49598 3.64933 3.95229 4.16864 4.35722 4.42308 4.48930 4.70564 4.77488 4.84851 4.97419 5.06003 5.08906 5.09986 5.11003 5.21638 5.32033 5.33258 5.35416 5.37002 5.48450 5.49671 5.59425 5.62232 5.63083 5.71460 5.71830 5.81494 5.83275 5.86631 5.96059 6.07497 6.10180 6.14144 6.26377 6.54619 7.24237 7.55856 7.60424 7.98881 8.31449 8.52248 9.20156 10.81950 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009641 B = 0.002605 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.478233 B =10747.662914 C =12917.168214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.105 4.105 3 C -0.148 4.148 4 C 0.141 3.859 5 H 0.096 0.904 6 C 0.109 3.891 7 N -0.726 5.726 8 C 0.542 3.458 9 O -0.536 6.536 10 C -0.144 4.144 11 H 0.126 0.874 12 C -0.099 4.099 13 C -0.201 4.201 14 C -0.130 4.130 15 C -0.113 4.113 16 N -0.736 5.736 17 C 0.533 3.467 18 O -0.513 6.513 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.405 0.595 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.398 0.602 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.749 17.063 15.731 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.125 4.125 3 C -0.206 4.206 4 C 0.036 3.964 5 H 0.114 0.886 6 C -0.015 4.015 7 N -0.378 5.378 8 C 0.328 3.672 9 O -0.413 6.413 10 C -0.165 4.165 11 H 0.144 0.856 12 C -0.137 4.137 13 C -0.202 4.202 14 C -0.167 4.167 15 C -0.150 4.150 16 N -0.390 5.390 17 C 0.320 3.680 18 O -0.387 6.387 19 C -0.305 4.305 20 S 0.168 5.832 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.241 0.759 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.118 0.882 45 H 0.232 0.768 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.408 18.320 14.763 24.385 hybrid contribution -1.742 -2.213 0.628 2.885 sum -8.149 16.107 15.391 23.722 Atomic orbital electron populations 1.21924 0.95011 1.02057 1.01832 1.21463 0.96212 0.96377 0.98468 1.21869 1.01443 0.95322 1.01979 1.21178 1.00896 0.80976 0.93395 0.88646 1.21837 1.00761 0.95953 0.82943 1.45968 1.53542 1.32311 1.05972 1.19685 0.79583 0.84357 0.83537 1.90693 1.37184 1.27095 1.86325 1.21979 1.06028 1.00124 0.88331 0.85623 1.22667 0.90518 1.01792 0.98684 1.21147 0.95432 1.08375 0.95215 1.22776 1.00683 0.98043 0.95157 1.22597 0.97159 0.94252 1.01003 1.46120 1.28242 1.07519 1.57137 1.20330 0.83043 0.87321 0.77348 1.90713 1.24893 1.79674 1.43399 1.23539 1.06489 0.94482 1.05977 1.85398 1.29021 1.02791 1.66001 1.22857 1.12375 0.93497 1.39684 0.90959 1.24992 0.94788 0.99289 0.94502 1.70014 1.16123 1.32355 1.31767 0.86172 0.78706 0.82012 0.78639 1.20266 1.20738 1.19693 0.92418 0.92498 0.92408 0.89667 0.92271 0.92509 0.92257 0.89937 0.90329 0.75939 0.87422 0.88079 0.88454 0.88286 0.88568 0.88230 0.76775 0.89292 0.89259 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.60 37.16 0.32 -1.05 16 2 C -0.11 -1.08 2.87 -90.62 -0.26 -1.34 16 3 C -0.15 -1.30 8.95 37.16 0.33 -0.97 16 4 C 0.14 1.48 1.90 -67.93 -0.13 1.35 16 5 H 0.10 1.16 7.58 -51.93 -0.39 0.77 16 6 C 0.11 1.01 4.53 -4.05 -0.02 0.99 16 7 N -0.73 -6.74 5.39 -60.30 -0.32 -7.06 16 8 C 0.54 5.88 7.61 -10.98 -0.08 5.79 16 9 O -0.54 -7.51 16.25 5.56 0.09 -7.42 16 10 C -0.14 -1.28 6.19 -91.77 -0.57 -1.85 16 11 H 0.13 0.94 8.14 -51.93 -0.42 0.51 16 12 C -0.10 -0.78 10.23 -26.73 -0.27 -1.05 16 13 C -0.20 -1.80 5.05 -154.52 -0.78 -2.58 16 14 C -0.13 -0.94 10.53 -26.73 -0.28 -1.22 16 15 C -0.11 -0.97 10.16 -26.73 -0.27 -1.24 16 16 N -0.74 -8.56 3.97 -53.81 -0.21 -8.78 16 17 C 0.53 8.99 7.81 -10.98 -0.09 8.90 16 18 O -0.51 -10.69 15.53 5.55 0.09 -10.61 16 19 C -0.15 -2.92 6.16 36.01 0.22 -2.69 16 20 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 21 C -0.54 -14.91 9.50 30.94 0.29 -14.62 16 22 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 25 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 29 H 0.06 0.47 6.23 -51.93 -0.32 0.15 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.55 7.75 -51.93 -0.40 0.15 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.44 6.68 -51.92 -0.35 0.10 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.78 6.81 -51.93 -0.35 0.42 16 37 H 0.08 0.74 6.06 -51.93 -0.31 0.42 16 38 H 0.41 3.48 8.14 -40.82 -0.33 3.14 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.40 3.81 8.60 -40.82 -0.35 3.46 16 46 H 0.09 1.54 8.14 -51.91 -0.42 1.11 16 47 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 411.21 15.07 6.20 6.20 Total: -1.00 -34.50 411.21 -10.21 -44.71 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.86 Total: 5.29 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -1.68 Total: -9.62 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.20 Total: -40.86 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.18 Total: -18.02 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.50 -10.21 -44.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532855062.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.857 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds