Wall clock time and date at job start Sat Apr 11 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47236 * 2 1 4 4 C 1.53000 * 109.47031 * 120.00354 * 2 1 3 5 5 H 1.09007 * 109.46641 * 185.00337 * 4 2 1 6 6 C 1.52995 * 109.47023 * 304.99931 * 4 2 1 7 7 N 1.46495 * 109.47115 * 175.00361 * 6 4 2 8 8 C 1.34785 * 120.00259 * 179.97438 * 7 6 4 9 9 O 1.21281 * 119.99404 * 359.97438 * 8 7 6 10 10 C 1.50696 * 119.99885 * 179.97438 * 8 7 6 11 11 H 1.08995 * 115.55786 * 325.72598 * 10 8 7 12 12 C 1.53006 * 117.49457 * 111.39491 * 10 8 7 13 13 C 1.52991 * 59.99897 * 107.48914 * 12 10 8 14 14 C 1.52996 * 138.59073 * 130.89764 * 13 12 10 15 15 C 1.52999 * 138.58861 * 229.11305 * 13 12 10 16 16 N 1.46499 * 109.47070 * 65.00246 * 4 2 1 17 17 C 1.34777 * 120.00199 * 85.00207 * 16 4 2 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 4 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 4 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47506 * 89.99666 * 25 23 21 27 27 H 1.48498 * 109.47217 * 210.00061 * 25 23 21 28 28 H 1.48502 * 109.46767 * 329.99807 * 25 23 21 29 29 H 1.08997 * 109.46867 * 299.99472 * 1 2 3 30 30 H 1.09002 * 109.46819 * 60.00202 * 1 2 3 31 31 H 1.09004 * 109.46946 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46818 * 240.00162 * 2 1 3 33 33 H 1.09002 * 109.47200 * 300.00428 * 3 2 1 34 34 H 1.09010 * 109.46679 * 60.00117 * 3 2 1 35 35 H 1.08989 * 109.47504 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47321 * 295.00347 * 6 4 2 37 37 H 1.09000 * 109.47575 * 55.00163 * 6 4 2 38 38 H 0.97004 * 120.00478 * 359.97438 * 7 6 4 39 39 H 1.08998 * 117.50060 * 214.97606 * 12 10 8 40 40 H 1.08999 * 117.49835 * 359.97438 * 12 10 8 41 41 H 1.08997 * 117.49628 * 238.38047 * 14 13 12 42 42 H 1.08996 * 117.49823 * 23.39532 * 14 13 12 43 43 H 1.09007 * 117.49839 * 336.58867 * 15 13 12 44 44 H 1.08999 * 117.50274 * 121.58916 * 15 13 12 45 45 H 0.97000 * 119.99484 * 264.99304 * 16 4 2 46 46 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 47 47 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 48 48 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1264 -0.6443 1.2951 6 6 1.4300 -0.0764 2.4952 7 7 1.8228 -0.8398 3.6823 8 6 1.3996 -0.4538 4.9024 9 8 0.6940 0.5259 5.0174 10 6 1.8032 -1.2395 6.1233 11 1 1.8992 -2.3156 5.9794 12 6 2.7636 -0.5700 7.1084 13 6 1.2904 -0.7506 7.4793 14 6 0.4581 -1.2786 8.6495 15 6 0.1364 0.0856 8.0359 16 7 1.6525 -2.1329 1.1904 17 6 2.4223 -3.0159 0.5240 18 8 3.4357 -2.6418 -0.0275 19 6 2.0204 -4.4669 0.4583 20 16 3.2435 -5.3886 -0.5063 21 6 2.5452 -7.0041 -0.4220 22 1 1.6238 -7.1667 0.1175 23 6 3.1786 -8.0676 -1.0498 24 7 4.3008 -7.8692 -1.7087 25 14 2.4380 -9.7802 -0.9611 26 1 1.5123 -9.9792 -2.1051 27 1 3.5230 -10.7924 -1.0203 28 1 1.6899 -9.9305 0.3129 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.7896 0.9485 2.5870 37 1 0.3435 -0.0737 2.4081 38 1 2.3874 -1.6232 3.5903 39 1 3.4912 -1.2059 7.6129 40 1 3.1038 0.4384 6.8732 41 1 -0.2327 -2.0970 8.4469 42 1 0.9249 -1.2901 9.6343 43 1 0.3916 0.9717 8.6173 44 1 -0.7659 0.1651 7.4296 45 1 0.8419 -2.4320 1.6313 46 1 1.9702 -4.8760 1.4674 47 1 1.0434 -4.5520 -0.0173 48 1 4.7438 -8.6125 -2.1472 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001532855062.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:27 Heat of formation + Delta-G solvation = -50.196498 kcal Electronic energy + Delta-G solvation = -26955.531677 eV Core-core repulsion = 23137.312512 eV Total energy + Delta-G solvation = -3818.219166 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.40734 -40.68320 -38.76876 -38.00085 -35.23792 -34.58258 -34.36547 -33.54737 -31.06332 -29.09245 -28.08816 -27.64861 -25.63526 -23.99057 -23.27946 -22.10467 -21.54426 -20.61577 -20.06001 -19.76035 -18.21210 -17.93684 -17.74913 -16.87711 -16.80026 -16.40787 -16.30848 -15.92316 -15.88189 -15.80567 -15.33698 -14.95778 -14.76228 -14.61126 -14.54002 -14.15044 -13.72948 -13.58194 -13.48745 -13.15541 -12.89667 -12.88782 -12.76128 -12.61271 -12.58234 -12.35969 -12.29765 -11.93254 -11.72543 -11.51219 -11.20738 -11.13799 -11.10895 -10.95019 -10.92916 -10.77840 -10.25789 -10.14584 -10.10683 -8.64604 -8.34163 -6.11263 1.27400 1.42396 1.43505 1.47531 1.57288 1.61632 1.98214 2.24382 2.29449 2.73499 2.86160 3.00189 3.32166 3.33239 3.50389 3.74476 3.84462 3.87240 3.97216 4.01179 4.10480 4.18655 4.27947 4.32170 4.47078 4.52643 4.54373 4.61711 4.70441 4.75353 4.77438 4.78719 4.80780 4.85629 4.98828 4.99819 5.01346 5.02224 5.20241 5.24953 5.27223 5.34900 5.42773 5.44710 5.50821 6.20419 6.44031 6.47290 7.07685 7.17079 7.23579 8.74765 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009641 B = 0.002605 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.478233 B =10747.662914 C =12917.168214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.145 4.145 4 C 0.148 3.852 5 H 0.080 0.920 6 C 0.118 3.882 7 N -0.719 5.719 8 C 0.541 3.459 9 O -0.571 6.571 10 C -0.151 4.151 11 H 0.142 0.858 12 C -0.090 4.090 13 C -0.224 4.224 14 C -0.113 4.113 15 C -0.127 4.127 16 N -0.708 5.708 17 C 0.540 3.460 18 O -0.558 6.558 19 C -0.131 4.131 20 S -0.147 6.147 21 C -0.545 4.545 22 H 0.082 0.918 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.996 3.004 26 H -0.270 1.270 27 H -0.279 1.279 28 H -0.258 1.258 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.410 0.590 39 H 0.128 0.872 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.116 0.884 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.413 0.587 46 H 0.111 0.889 47 H 0.106 0.894 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.430 16.726 17.562 26.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.203 4.203 4 C 0.043 3.957 5 H 0.098 0.902 6 C -0.006 4.006 7 N -0.370 5.370 8 C 0.328 3.672 9 O -0.451 6.451 10 C -0.172 4.172 11 H 0.160 0.840 12 C -0.127 4.127 13 C -0.225 4.225 14 C -0.149 4.149 15 C -0.164 4.164 16 N -0.362 5.362 17 C 0.326 3.674 18 O -0.435 6.435 19 C -0.282 4.282 20 S 0.080 5.920 21 C -0.693 4.693 22 H 0.100 0.900 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.818 3.182 26 H -0.195 1.195 27 H -0.204 1.204 28 H -0.181 1.181 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.247 0.753 39 H 0.146 0.854 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.134 0.866 43 H 0.120 0.880 44 H 0.103 0.897 45 H 0.250 0.750 46 H 0.130 0.870 47 H 0.124 0.876 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.122 17.995 16.616 25.805 hybrid contribution -1.261 -1.968 0.091 2.339 sum -9.383 16.027 16.707 24.981 Atomic orbital electron populations 1.21902 0.93661 1.02072 1.02808 1.21403 0.97268 0.96952 0.96708 1.21847 1.01060 0.94322 1.03047 1.21193 1.00185 0.79885 0.94464 0.90174 1.21756 1.00921 0.95884 0.82027 1.45933 1.53153 1.32253 1.05704 1.20035 0.78914 0.83970 0.84245 1.90678 1.38868 1.28694 1.86820 1.22044 1.06844 1.00715 0.87552 0.84031 1.22743 0.90415 1.01742 0.97840 1.21403 0.96141 1.09183 0.95754 1.22858 0.99772 0.97030 0.95252 1.22605 0.96722 0.95468 1.01559 1.45810 1.27681 1.07476 1.55280 1.19970 0.82849 0.87051 0.77507 1.90711 1.27003 1.80108 1.45665 1.23382 1.04379 0.94783 1.05687 1.85562 1.33312 1.04571 1.68542 1.23197 1.12601 0.93869 1.39628 0.89998 1.26095 0.95116 1.04023 0.93887 1.70178 1.17846 1.33764 1.32957 0.84987 0.77895 0.76043 0.79278 1.19494 1.20380 1.18145 0.91022 0.91993 0.92848 0.92774 0.91568 0.91071 0.92909 0.89522 0.89664 0.75350 0.85391 0.88726 0.87956 0.86612 0.88020 0.89716 0.74986 0.87050 0.87596 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.60 71.98 0.62 -1.78 16 2 C -0.10 -2.04 2.87 -10.79 -0.03 -2.07 16 3 C -0.15 -2.38 8.95 71.98 0.64 -1.74 16 4 C 0.15 2.94 1.90 44.99 0.09 3.03 16 5 H 0.08 1.93 7.58 -2.38 -0.02 1.91 16 6 C 0.12 1.97 4.53 86.38 0.39 2.36 16 7 N -0.72 -12.13 5.39 -463.07 -2.50 -14.62 16 8 C 0.54 11.00 7.61 87.65 0.67 11.66 16 9 O -0.57 -15.51 16.25 -3.03 -0.05 -15.56 16 10 C -0.15 -2.43 6.19 -11.54 -0.07 -2.50 16 11 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 12 C -0.09 -1.26 10.23 30.59 0.31 -0.94 16 13 C -0.22 -3.67 5.05 -52.19 -0.26 -3.93 16 14 C -0.11 -1.40 10.53 30.59 0.32 -1.08 16 15 C -0.13 -2.08 10.16 30.59 0.31 -1.76 16 16 N -0.71 -15.48 3.97 -442.53 -1.76 -17.23 16 17 C 0.54 17.94 7.81 87.66 0.68 18.62 16 18 O -0.56 -23.73 15.53 -3.04 -0.05 -23.78 16 19 C -0.13 -4.83 6.16 71.24 0.44 -4.39 16 20 S -0.15 -7.86 20.57 -56.49 -1.16 -9.03 16 21 C -0.55 -30.33 9.50 67.95 0.65 -29.69 16 22 H 0.08 4.23 7.80 -2.91 -0.02 4.20 16 23 C 0.01 0.76 5.49 84.86 0.47 1.23 16 24 N -0.91 -55.12 13.22 21.65 0.29 -54.83 16 25 Si 1.00 42.83 29.55 68.60 2.03 44.86 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 28 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 29 H 0.07 0.98 6.23 -2.39 -0.01 0.97 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.91 7.75 -2.39 -0.02 0.90 16 32 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.97 6.68 -2.38 -0.02 0.96 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 1.47 6.81 -2.39 -0.02 1.45 16 37 H 0.09 1.38 6.06 -2.39 -0.01 1.37 16 38 H 0.41 6.27 8.14 -92.71 -0.75 5.51 16 39 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 42 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.41 6.86 8.60 -92.71 -0.80 6.06 16 46 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 47 H 0.11 3.57 8.14 -2.40 -0.02 3.55 16 48 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -76.98 411.21 1.45 -75.53 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: -0.58 Total: 27.66 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 5.22 Total: -13.00 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -3.97 Total: -86.68 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -0.10 Total: -39.34 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.16 Total: -9.03 kcal Total: -76.98 1.45 -75.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532855062.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.336 kcal (2) G-P(sol) polarization free energy of solvation -76.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds