Wall clock time and date at job start Sat Apr 11 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50703 * 119.99825 * 2 1 4 4 C 1.32995 * 120.00360 * 180.02562 * 2 1 3 5 5 C 1.47096 * 119.99972 * 352.83974 * 4 2 1 6 6 O 1.21618 * 119.99926 * 354.00359 * 5 4 2 7 7 N 1.34769 * 120.00206 * 174.00494 * 5 4 2 8 8 C 1.46500 * 120.00544 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47589 * 180.02562 * 8 7 5 10 10 H 1.08998 * 110.54070 * 307.61188 * 9 8 7 11 11 C 1.54884 * 110.48556 * 70.22533 * 9 8 7 12 12 C 1.54892 * 102.75138 * 156.62343 * 11 9 8 13 13 C 1.54273 * 104.19310 * 322.05512 * 12 11 9 14 14 C 1.53883 * 106.59624 * 23.60991 * 13 12 11 15 15 H 1.08996 * 110.03078 * 240.66381 * 14 13 12 16 16 N 1.46501 * 110.03063 * 119.28490 * 14 13 12 17 17 C 1.34777 * 120.00063 * 86.45057 * 16 14 13 18 18 O 1.21276 * 119.99700 * 0.02562 * 17 16 14 19 19 C 1.50694 * 119.99692 * 179.72055 * 17 16 14 20 20 S 1.81007 * 109.47024 * 180.27921 * 19 17 16 21 21 C 1.76201 * 100.00107 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00022 * 0.02562 * 21 20 19 23 23 C 1.38797 * 119.99951 * 179.97438 * 21 20 19 24 24 N 1.31637 * 119.99774 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00012 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47206 * 60.00137 * 25 23 21 27 27 H 1.48504 * 109.46977 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46485 * 299.99828 * 25 23 21 29 29 H 1.09001 * 109.46705 * 264.38682 * 1 2 3 30 30 H 1.08995 * 109.47456 * 24.38702 * 1 2 3 31 31 H 1.09002 * 109.46897 * 144.38738 * 1 2 3 32 32 H 1.08994 * 109.47343 * 270.00617 * 3 2 1 33 33 H 1.09008 * 109.47090 * 30.00535 * 3 2 1 34 34 H 1.09000 * 109.47314 * 149.99965 * 3 2 1 35 35 H 1.08003 * 119.99943 * 172.83773 * 4 2 1 36 36 H 0.97003 * 119.99951 * 359.97438 * 7 5 4 37 37 H 1.08999 * 109.46833 * 59.99461 * 8 7 5 38 38 H 1.09008 * 109.47149 * 300.00404 * 8 7 5 39 39 H 1.08996 * 110.75984 * 38.30990 * 11 9 8 40 40 H 1.08997 * 110.75941 * 274.93186 * 11 9 8 41 41 H 1.09001 * 110.48896 * 203.38040 * 12 11 9 42 42 H 1.08996 * 110.60252 * 80.78616 * 12 11 9 43 43 H 1.08998 * 110.03668 * 264.32896 * 13 12 11 44 44 H 1.08996 * 110.03200 * 142.89169 * 13 12 11 45 45 H 0.96996 * 119.99557 * 266.45140 * 16 14 13 46 46 H 1.08997 * 109.47499 * 300.27912 * 19 17 16 47 47 H 1.09003 * 109.47186 * 60.28585 * 19 17 16 48 48 H 0.97001 * 119.99569 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4452 -2.4208 0.1577 6 8 0.2530 -2.4129 0.3978 7 7 2.1004 -3.5922 0.0366 8 6 1.3768 -4.8562 0.1948 9 6 2.3462 -6.0254 0.0109 10 1 2.8948 -5.9238 -0.9254 11 6 3.3264 -6.1101 1.2071 12 6 3.7709 -7.5936 1.1805 13 6 2.4924 -8.3647 0.7922 14 6 1.5865 -7.3676 0.0486 15 1 0.6440 -7.2491 0.5830 16 7 1.3339 -7.8397 -1.3151 17 6 0.3174 -8.6913 -1.5559 18 8 -0.3884 -9.0664 -0.6438 19 6 0.0537 -9.1719 -2.9596 20 16 -1.3707 -10.2888 -2.9573 21 6 -1.4503 -10.6867 -4.6720 22 1 -0.7345 -10.2602 -5.3591 23 6 -2.4322 -11.5491 -5.1394 24 7 -3.3044 -12.0693 -4.3018 25 14 -2.5162 -11.9715 -6.9571 26 1 -1.2449 -12.6153 -7.3750 27 1 -3.6463 -12.9047 -7.1967 28 1 -2.7247 -10.7299 -7.7446 29 1 -0.3633 -0.1005 1.0228 30 1 -0.3634 0.9359 -0.4243 31 1 -0.3633 -0.8355 -0.5984 32 1 2.4420 1.6199 -1.0276 33 1 1.6714 2.0648 0.5140 34 1 3.2129 1.1749 0.5138 35 1 3.2458 -1.1552 -0.1171 36 1 3.0513 -3.5986 -0.1552 37 1 0.5861 -4.9181 -0.5530 38 1 0.9382 -4.9015 1.1917 39 1 2.8165 -5.8764 2.1417 40 1 4.1793 -5.4486 1.0553 41 1 4.1200 -7.9050 2.1650 42 1 4.5504 -7.7471 0.4342 43 1 1.9897 -8.7294 1.6880 44 1 2.7441 -9.1998 0.1385 45 1 1.8982 -7.5393 -2.0446 46 1 -0.1557 -8.3174 -3.6030 47 1 0.9302 -9.7017 -3.3329 48 1 -3.9908 -12.6717 -4.6285 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533071863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:42 Heat of formation + Delta-G solvation = -105.376160 kcal Electronic energy + Delta-G solvation = -26413.124130 eV Core-core repulsion = 22592.512195 eV Total energy + Delta-G solvation = -3820.611935 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.25652 -40.68676 -39.07413 -36.56739 -35.58303 -34.65122 -34.57059 -31.38390 -31.10307 -28.80870 -28.58145 -28.24055 -27.59439 -25.39343 -22.36594 -22.21675 -21.45699 -20.89982 -19.93153 -19.55433 -18.06225 -17.88777 -17.52036 -16.88832 -16.74634 -16.47330 -16.35192 -16.02452 -15.70391 -15.25104 -15.08362 -14.98050 -14.74061 -14.58531 -14.39647 -14.20269 -13.76650 -13.52392 -13.34711 -13.21478 -13.18076 -12.91100 -12.87179 -12.79403 -12.63530 -12.53827 -12.37713 -12.01093 -11.84245 -11.80383 -11.72195 -11.45696 -11.13786 -10.94082 -10.65207 -10.29024 -10.26942 -10.09247 -9.80013 -8.68060 -8.35312 -6.13846 0.43025 1.25814 1.43149 1.45924 1.55713 1.60631 2.19036 2.26626 2.32555 2.35061 2.98544 3.30711 3.47627 3.50826 3.76950 3.86531 3.95233 3.99868 4.20674 4.26363 4.30206 4.32204 4.42653 4.45972 4.49253 4.56951 4.59015 4.66016 4.68629 4.76250 4.80428 4.87953 4.92089 5.03942 5.07105 5.13325 5.18302 5.22372 5.25072 5.40347 5.42288 5.49515 5.56796 5.58701 5.66761 6.18591 6.50799 6.65253 7.05527 7.25719 7.33554 8.73669 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011859 B = 0.002090 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.434677 B =13391.430992 C =15069.013036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.032 4.032 3 C -0.124 4.124 4 C -0.244 4.244 5 C 0.531 3.469 6 O -0.588 6.588 7 N -0.709 5.709 8 C 0.133 3.867 9 C -0.092 4.092 10 H 0.115 0.885 11 C -0.109 4.109 12 C -0.113 4.113 13 C -0.136 4.136 14 C 0.145 3.855 15 H 0.062 0.938 16 N -0.706 5.706 17 C 0.533 3.467 18 O -0.566 6.566 19 C -0.129 4.129 20 S -0.154 6.154 21 C -0.547 4.547 22 H 0.083 0.917 23 C 0.012 3.988 24 N -0.912 5.912 25 Si 1.000 3.000 26 H -0.260 1.260 27 H -0.279 1.279 28 H -0.262 1.262 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.161 0.839 36 H 0.418 0.582 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.416 0.584 46 H 0.107 0.893 47 H 0.111 0.889 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.193 25.144 8.440 35.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.034 4.034 3 C -0.180 4.180 4 C -0.264 4.264 5 C 0.322 3.678 6 O -0.471 6.471 7 N -0.361 5.361 8 C 0.008 3.992 9 C -0.111 4.111 10 H 0.133 0.867 11 C -0.147 4.147 12 C -0.151 4.151 13 C -0.175 4.175 14 C 0.040 3.960 15 H 0.080 0.920 16 N -0.360 5.360 17 C 0.319 3.681 18 O -0.444 6.444 19 C -0.281 4.281 20 S 0.073 5.927 21 C -0.695 4.695 22 H 0.101 0.899 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.185 1.185 27 H -0.204 1.204 28 H -0.187 1.187 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.178 0.822 36 H 0.255 0.745 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.253 0.747 46 H 0.126 0.874 47 H 0.129 0.871 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 21.065 24.399 10.158 33.797 hybrid contribution 0.404 -0.393 -2.184 2.256 sum 21.469 24.006 7.973 33.178 Atomic orbital electron populations 1.21103 0.92599 1.02236 1.02448 1.22867 0.96111 0.96139 0.88289 1.21059 1.00340 0.92572 1.04007 1.22490 1.01595 0.90359 1.11979 1.19218 0.86620 0.85683 0.76265 1.90788 1.17349 1.88320 1.50600 1.45684 1.13517 1.04497 1.72433 1.21199 0.94467 0.82805 1.00705 1.22391 0.95883 0.90412 1.02396 0.86721 1.22558 0.98595 0.97018 0.96498 1.22315 0.95873 0.94344 1.02519 1.22556 0.96969 0.98173 0.99820 1.21615 0.98568 0.93538 0.82270 0.91997 1.45903 1.32194 1.47021 1.10895 1.20080 0.80028 0.78380 0.89599 1.90692 1.48930 1.57741 1.47018 1.23376 1.03773 1.03736 0.97174 1.85608 1.36711 1.57400 1.12935 1.23173 1.19491 1.33703 0.93109 0.89862 1.26160 0.93982 0.94682 1.04461 1.70188 1.16842 1.30438 1.37321 0.84991 0.78347 0.78477 0.76097 1.18492 1.20401 1.18703 0.91639 0.90830 0.92094 0.89095 0.90253 0.89495 0.82181 0.74467 0.93917 0.92786 0.91452 0.87980 0.90591 0.89851 0.92535 0.92195 0.74651 0.87443 0.87057 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.47 71.24 0.60 -1.69 16 2 C -0.03 -0.42 6.11 -17.61 -0.11 -0.53 16 3 C -0.12 -0.72 10.01 71.24 0.71 0.00 16 4 C -0.24 -3.17 9.62 23.43 0.23 -2.95 16 5 C 0.53 10.71 7.61 86.57 0.66 11.37 16 6 O -0.59 -17.55 13.28 -4.09 -0.05 -17.60 16 7 N -0.71 -10.10 5.44 -466.72 -2.54 -12.65 16 8 C 0.13 2.47 4.96 86.38 0.43 2.90 16 9 C -0.09 -1.22 2.58 -9.72 -0.03 -1.24 16 10 H 0.11 0.99 7.73 -2.39 -0.02 0.97 16 11 C -0.11 -1.04 6.19 31.88 0.20 -0.84 16 12 C -0.11 -1.32 6.83 31.67 0.22 -1.11 16 13 C -0.14 -2.78 6.59 31.32 0.21 -2.57 16 14 C 0.15 3.22 2.80 45.72 0.13 3.35 16 15 H 0.06 1.81 7.30 -2.39 -0.02 1.80 16 16 N -0.71 -17.57 4.99 -439.10 -2.19 -19.76 16 17 C 0.53 19.99 7.84 87.66 0.69 20.67 16 18 O -0.57 -26.93 15.54 -3.02 -0.05 -26.98 16 19 C -0.13 -5.20 6.16 71.23 0.44 -4.76 16 20 S -0.15 -8.70 20.57 -56.49 -1.16 -9.87 16 21 C -0.55 -31.64 9.50 67.95 0.65 -31.00 16 22 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 23 C 0.01 0.68 5.49 84.86 0.47 1.15 16 24 N -0.91 -56.84 13.22 21.65 0.29 -56.55 16 25 Si 1.00 44.03 29.55 68.60 2.03 46.06 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 27 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 28 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 29 H 0.07 1.33 8.04 -2.39 -0.02 1.31 16 30 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 31 H 0.06 1.47 6.14 -2.39 -0.01 1.46 16 32 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.08 0.40 8.12 -2.38 -0.02 0.38 16 34 H 0.09 0.26 8.07 -2.39 -0.02 0.25 16 35 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 36 H 0.42 2.66 8.42 -92.71 -0.78 1.88 16 37 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 1.20 8.02 -2.38 -0.02 1.18 16 39 H 0.07 0.78 7.96 -2.39 -0.02 0.76 16 40 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.06 1.38 7.92 -2.39 -0.02 1.36 16 45 H 0.42 7.19 8.34 -92.71 -0.77 6.41 16 46 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 47 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 48 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -86.08 408.13 1.21 -84.87 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -0.59 Total: 19.71 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 5.48 Total: -7.25 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -4.45 Total: -88.95 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.10 Total: -44.58 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.87 kcal Total: -86.08 1.21 -84.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533071863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.504 kcal (2) G-P(sol) polarization free energy of solvation -86.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds