Wall clock time and date at job start Sat Apr 11 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50699 * 120.00129 * 2 1 4 4 C 1.32993 * 119.99978 * 179.97438 * 2 1 3 5 5 C 1.47101 * 120.00346 * 352.87013 * 4 2 1 6 6 O 1.21617 * 119.99466 * 353.85802 * 5 4 2 7 7 N 1.34770 * 120.00295 * 173.85683 * 5 4 2 8 8 C 1.46504 * 120.00005 * 179.97438 * 7 5 4 9 9 C 1.53008 * 109.46944 * 180.02562 * 8 7 5 10 10 H 1.08998 * 110.05443 * 53.58530 * 9 8 7 11 11 C 1.54267 * 110.03090 * 292.16887 * 9 8 7 12 12 C 1.54891 * 104.19462 * 217.10781 * 11 9 8 13 13 C 1.54892 * 102.74935 * 37.93781 * 12 11 9 14 14 C 1.53869 * 110.02955 * 175.00222 * 9 8 7 15 15 H 1.08998 * 110.03372 * 359.94946 * 14 9 8 16 16 N 1.46507 * 110.03295 * 238.56894 * 14 9 8 17 17 C 1.34773 * 120.00173 * 154.99817 * 16 14 9 18 18 O 1.21279 * 119.99952 * 0.02562 * 17 16 14 19 19 C 1.50700 * 120.00069 * 180.02562 * 17 16 14 20 20 S 1.80994 * 109.47022 * 180.02562 * 19 17 16 21 21 C 1.76206 * 99.99851 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99724 * 359.97438 * 21 20 19 23 23 C 1.38800 * 120.00111 * 179.97438 * 21 20 19 24 24 N 1.31631 * 119.99769 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00014 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47253 * 90.00077 * 25 23 21 27 27 H 1.48497 * 109.47128 * 209.99964 * 25 23 21 28 28 H 1.48503 * 109.47025 * 330.00219 * 25 23 21 29 29 H 1.09004 * 109.47215 * 144.69587 * 1 2 3 30 30 H 1.08999 * 109.47374 * 264.69187 * 1 2 3 31 31 H 1.08998 * 109.47198 * 24.69369 * 1 2 3 32 32 H 1.09007 * 109.47156 * 270.00220 * 3 2 1 33 33 H 1.09005 * 109.46774 * 29.99535 * 3 2 1 34 34 H 1.08998 * 109.47550 * 150.00056 * 3 2 1 35 35 H 1.08009 * 119.99923 * 172.87060 * 4 2 1 36 36 H 0.97001 * 120.00340 * 0.02562 * 7 5 4 37 37 H 1.08997 * 109.46861 * 60.00467 * 8 7 5 38 38 H 1.09000 * 109.47072 * 300.00145 * 8 7 5 39 39 H 1.09001 * 110.48625 * 335.78100 * 11 9 8 40 40 H 1.08998 * 110.48387 * 98.42756 * 11 9 8 41 41 H 1.09001 * 110.75400 * 279.62800 * 12 11 9 42 42 H 1.08988 * 110.91548 * 156.33031 * 12 11 9 43 43 H 1.08999 * 110.48943 * 203.38197 * 13 12 11 44 44 H 1.09004 * 110.48058 * 80.73889 * 13 12 11 45 45 H 0.97003 * 119.99778 * 335.00376 * 16 14 9 46 46 H 1.09003 * 109.46841 * 300.00208 * 19 17 16 47 47 H 1.09002 * 109.46856 * 59.99733 * 19 17 16 48 48 H 0.97004 * 119.99829 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4450 -2.4207 0.1592 6 8 0.2533 -2.4126 0.4014 7 7 2.0997 -3.5923 0.0362 8 6 1.3758 -4.8561 0.1948 9 6 2.3446 -6.0256 0.0085 10 1 3.2000 -5.9121 0.6744 11 6 2.8209 -6.0888 -1.4575 12 6 2.9148 -7.6048 -1.7613 13 6 1.6911 -8.1811 -1.0066 14 6 1.6263 -7.3558 0.2951 15 1 0.5878 -7.1682 0.5678 16 7 2.3075 -8.0711 1.3771 17 6 1.6283 -8.9586 2.1304 18 8 0.4534 -9.1656 1.9122 19 6 2.3289 -9.6939 3.2438 20 16 1.1586 -10.8057 4.0624 21 6 2.2133 -11.5154 5.2826 22 1 3.2494 -11.2162 5.3409 23 6 1.7125 -12.4590 6.1689 24 7 0.4499 -12.8240 6.0975 25 14 2.8308 -13.2118 7.4620 26 1 2.7824 -12.3896 8.6977 27 1 2.3753 -14.5918 7.7676 28 1 4.2237 -13.2525 6.9488 29 1 -0.3634 -0.8387 -0.5939 30 1 -0.3634 -0.0951 1.0232 31 1 -0.3633 0.9337 -0.4293 32 1 2.4422 1.6198 -1.0277 33 1 1.6713 2.0647 0.5138 34 1 3.2129 1.1748 0.5138 35 1 3.2458 -1.1554 -0.1156 36 1 3.0503 -3.5989 -0.1566 37 1 0.5839 -4.9173 -0.5517 38 1 0.9391 -4.9019 1.1924 39 1 2.0943 -5.6123 -2.1155 40 1 3.7981 -5.6175 -1.5617 41 1 3.8423 -8.0208 -1.3678 42 1 2.8324 -7.7929 -2.8316 43 1 1.8439 -9.2367 -0.7819 44 1 0.7821 -8.0424 -1.5920 45 1 3.2473 -7.9058 1.5514 46 1 3.1545 -10.2748 2.8324 47 1 2.7150 -8.9756 3.9670 48 1 0.0998 -13.4831 6.7172 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533071866.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:46 Heat of formation + Delta-G solvation = -104.814203 kcal Electronic energy + Delta-G solvation = -26347.747711 eV Core-core repulsion = 22527.160144 eV Total energy + Delta-G solvation = -3820.587567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28708 -40.69306 -39.09495 -36.56827 -35.59476 -34.60444 -34.49625 -31.34468 -31.08468 -28.80933 -28.57632 -28.35008 -27.61426 -25.39110 -22.41491 -22.23195 -21.28136 -20.97085 -19.93192 -19.52034 -18.05928 -17.86821 -17.50497 -16.88599 -16.71074 -16.48847 -16.40567 -15.97316 -15.68916 -15.40438 -15.24593 -14.86178 -14.71636 -14.58532 -14.43389 -14.17110 -13.74626 -13.44164 -13.35342 -13.19836 -13.17086 -12.90509 -12.85482 -12.71248 -12.60384 -12.50255 -12.38353 -11.98130 -11.89100 -11.82076 -11.72175 -11.51004 -11.14892 -10.93536 -10.65814 -10.27795 -10.26254 -10.08786 -9.80139 -8.67546 -8.35135 -6.13475 0.42936 1.26336 1.42043 1.46630 1.56909 1.61179 2.15106 2.26859 2.32397 2.39542 2.98988 3.31379 3.48397 3.51989 3.75326 3.86846 3.95362 4.00471 4.20382 4.26829 4.31124 4.34003 4.41263 4.44706 4.49957 4.59125 4.61848 4.68579 4.68957 4.77169 4.82595 4.88268 4.92071 4.98360 5.06877 5.09602 5.18402 5.23297 5.26495 5.41101 5.43222 5.49191 5.57256 5.58093 5.66452 6.19190 6.51737 6.64627 7.05986 7.26556 7.32750 8.74106 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015029 B = 0.001899 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.604975 B =14739.080882 C =15743.094209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.031 4.031 3 C -0.124 4.124 4 C -0.245 4.245 5 C 0.532 3.468 6 O -0.587 6.587 7 N -0.710 5.710 8 C 0.133 3.867 9 C -0.093 4.093 10 H 0.109 0.891 11 C -0.109 4.109 12 C -0.115 4.115 13 C -0.137 4.137 14 C 0.144 3.856 15 H 0.062 0.938 16 N -0.704 5.704 17 C 0.533 3.467 18 O -0.566 6.566 19 C -0.129 4.129 20 S -0.155 6.155 21 C -0.546 4.546 22 H 0.084 0.916 23 C 0.012 3.988 24 N -0.912 5.912 25 Si 1.000 3.000 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.257 1.257 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.159 0.841 36 H 0.417 0.583 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.416 0.584 46 H 0.111 0.889 47 H 0.109 0.891 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.713 26.647 -18.595 35.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.033 4.033 3 C -0.180 4.180 4 C -0.265 4.265 5 C 0.323 3.677 6 O -0.470 6.470 7 N -0.362 5.362 8 C 0.009 3.991 9 C -0.112 4.112 10 H 0.127 0.873 11 C -0.147 4.147 12 C -0.153 4.153 13 C -0.175 4.175 14 C 0.039 3.961 15 H 0.080 0.920 16 N -0.358 5.358 17 C 0.319 3.681 18 O -0.445 6.445 19 C -0.280 4.280 20 S 0.073 5.927 21 C -0.694 4.694 22 H 0.102 0.898 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.194 1.194 27 H -0.203 1.203 28 H -0.181 1.181 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.176 0.824 36 H 0.255 0.745 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.254 0.746 46 H 0.129 0.871 47 H 0.127 0.873 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.816 26.194 -18.739 33.975 hybrid contribution 1.772 -0.756 1.291 2.320 sum 12.588 25.438 -17.448 33.317 Atomic orbital electron populations 1.21106 0.92436 1.02407 1.02396 1.22866 0.96224 0.96041 0.88208 1.21062 1.00271 0.92628 1.04077 1.22486 1.01545 0.90451 1.12066 1.19193 0.86641 0.85619 0.76240 1.90780 1.17342 1.88305 1.50536 1.45698 1.13578 1.04548 1.72386 1.21258 0.94680 0.82670 1.00526 1.22178 0.98137 0.90758 1.00145 0.87325 1.22455 1.02771 0.96486 0.92945 1.22476 0.97058 0.95229 1.00488 1.22767 1.00223 0.98968 0.95577 1.21553 0.96588 0.91244 0.86735 0.91989 1.45859 1.14540 1.41940 1.33445 1.20092 0.86507 0.79355 0.82143 1.90697 1.17980 1.65162 1.70613 1.23373 1.03203 1.02100 0.99325 1.85625 1.17648 1.49766 1.39708 1.23210 0.98661 1.28462 1.19040 0.89820 1.26152 0.97152 0.96149 0.99806 1.70193 1.15392 1.31466 1.37775 0.84940 0.78242 0.77282 0.77426 1.19354 1.20313 1.18053 0.91738 0.91888 0.90711 0.88873 0.90296 0.89740 0.82368 0.74527 0.92308 0.93962 0.91087 0.88224 0.90468 0.90310 0.93083 0.91085 0.74616 0.87092 0.87269 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.47 71.24 0.60 -1.56 16 2 C -0.03 -0.40 6.11 -17.62 -0.11 -0.51 16 3 C -0.12 -0.70 10.01 71.24 0.71 0.01 16 4 C -0.24 -3.15 9.62 23.43 0.23 -2.93 16 5 C 0.53 10.53 7.61 86.57 0.66 11.19 16 6 O -0.59 -17.06 13.28 -4.08 -0.05 -17.11 16 7 N -0.71 -10.05 5.40 -466.70 -2.52 -12.57 16 8 C 0.13 2.43 4.73 86.38 0.41 2.84 16 9 C -0.09 -1.25 2.73 -10.07 -0.03 -1.27 16 10 H 0.11 1.04 7.62 -2.39 -0.02 1.03 16 11 C -0.11 -0.99 6.08 31.67 0.19 -0.80 16 12 C -0.12 -1.41 6.91 31.89 0.22 -1.19 16 13 C -0.14 -2.80 6.54 31.67 0.21 -2.60 16 14 C 0.14 3.19 2.90 45.71 0.13 3.33 16 15 H 0.06 1.82 7.09 -2.39 -0.02 1.80 16 16 N -0.70 -17.21 5.03 -439.11 -2.21 -19.41 16 17 C 0.53 19.76 7.84 87.66 0.69 20.45 16 18 O -0.57 -26.83 15.52 -3.03 -0.05 -26.88 16 19 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 20 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 21 C -0.55 -31.37 9.50 67.95 0.65 -30.73 16 22 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 23 C 0.01 0.69 5.49 84.86 0.47 1.16 16 24 N -0.91 -56.62 13.22 21.65 0.29 -56.34 16 25 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 27 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 28 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 29 H 0.06 1.44 6.12 -2.39 -0.01 1.43 16 30 H 0.06 1.27 8.05 -2.39 -0.02 1.25 16 31 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 32 H 0.09 0.29 8.14 -2.38 -0.02 0.27 16 33 H 0.08 0.39 8.12 -2.38 -0.02 0.37 16 34 H 0.08 0.29 8.07 -2.39 -0.02 0.28 16 35 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 36 H 0.42 2.76 8.34 -92.71 -0.77 1.99 16 37 H 0.06 1.24 8.00 -2.39 -0.02 1.22 16 38 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 0.73 7.76 -2.39 -0.02 0.71 16 40 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.05 1.30 8.04 -2.39 -0.02 1.28 16 44 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.42 6.95 8.32 -92.71 -0.77 6.18 16 46 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 47 H 0.11 3.88 8.14 -2.39 -0.02 3.87 16 48 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -85.32 407.54 1.21 -84.11 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -0.58 Total: 19.51 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 5.47 Total: -7.28 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -4.44 Total: -88.32 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -0.10 Total: -43.99 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -85.32 1.21 -84.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533071866.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.704 kcal (2) G-P(sol) polarization free energy of solvation -85.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds