Wall clock time and date at job start Sat Apr 11 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47002 * 2 1 4 4 C 1.52998 * 109.47531 * 120.00427 * 2 1 3 5 5 H 1.08995 * 115.55894 * 272.07931 * 4 2 1 6 6 C 1.53000 * 117.49839 * 126.38745 * 4 2 1 7 7 C 1.53004 * 60.00089 * 252.50871 * 6 4 2 8 8 H 1.08987 * 117.50549 * 252.48505 * 7 6 4 9 9 C 1.50703 * 117.49278 * 107.48708 * 7 6 4 10 10 O 1.21286 * 120.00515 * 336.60919 * 9 7 6 11 11 N 1.34777 * 119.99602 * 156.32963 * 9 7 6 12 12 C 1.46507 * 119.99775 * 180.27544 * 11 9 7 13 13 C 1.50704 * 109.46773 * 180.02562 * 12 11 9 14 14 C 1.31000 * 119.99604 * 123.94395 * 13 12 11 15 15 C 1.50701 * 120.00494 * 8.73450 * 14 13 12 16 16 N 1.46500 * 109.46964 * 123.80162 * 15 14 13 17 17 C 1.34783 * 119.99620 * 180.02562 * 16 15 14 18 18 O 1.21285 * 120.00000 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99712 * 180.02562 * 17 16 15 20 20 S 1.81000 * 109.46699 * 179.97438 * 19 17 16 21 21 C 1.76205 * 99.99661 * 179.97438 * 20 19 17 22 22 H 1.07998 * 119.99985 * 0.02562 * 21 20 19 23 23 C 1.38797 * 119.99948 * 179.97438 * 21 20 19 24 24 N 1.31631 * 119.99900 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00140 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46821 * 60.00142 * 25 23 21 27 27 H 1.48494 * 109.47229 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47212 * 300.00326 * 25 23 21 29 29 H 1.08993 * 109.46698 * 299.78357 * 1 2 3 30 30 H 1.08996 * 109.47362 * 59.78524 * 1 2 3 31 31 H 1.08997 * 109.46823 * 179.78632 * 1 2 3 32 32 H 1.09004 * 109.46797 * 240.00569 * 2 1 3 33 33 H 1.08997 * 109.46847 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47578 * 300.00028 * 3 2 1 35 35 H 1.08996 * 109.47085 * 60.00788 * 3 2 1 36 36 H 1.09005 * 117.49313 * 145.02425 * 6 4 2 37 37 H 1.08996 * 117.49933 * 0.02562 * 6 4 2 38 38 H 0.97003 * 120.00162 * 0.28010 * 11 9 7 39 39 H 1.08999 * 109.47150 * 300.00201 * 12 11 9 40 40 H 1.08996 * 109.47235 * 60.00397 * 12 11 9 41 41 H 1.07998 * 120.00255 * 303.94027 * 13 12 11 42 42 H 1.07999 * 120.00081 * 188.73530 * 14 13 12 43 43 H 1.08993 * 109.47376 * 243.80543 * 15 14 13 44 44 H 1.09005 * 109.46711 * 3.80251 * 15 14 13 45 45 H 0.96993 * 120.00137 * 0.02562 * 16 15 14 46 46 H 1.09000 * 109.46987 * 299.99577 * 19 17 16 47 47 H 1.08991 * 109.47288 * 59.99977 * 19 17 16 48 48 H 0.97005 * 119.99544 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 2.1633 -0.0980 2.1347 6 6 3.0347 -1.8663 1.0471 7 6 1.5932 -2.1692 1.4609 8 1 1.4223 -2.4988 2.4856 9 6 0.6843 -2.7757 0.4230 10 8 0.9245 -2.6248 -0.7562 11 7 -0.3924 -3.4905 0.8052 12 6 -1.2727 -4.0852 -0.2038 13 6 -2.3927 -4.8257 0.4805 14 6 -3.6385 -4.5270 0.2071 15 6 -3.9567 -3.5877 -0.9276 16 7 -4.8651 -4.2483 -1.8682 17 6 -5.2880 -3.5945 -2.9684 18 8 -4.9161 -2.4597 -3.1799 19 6 -6.2229 -4.2738 -3.9357 20 16 -6.6049 -3.1457 -5.2986 21 6 -7.6812 -4.1672 -6.2487 22 1 -7.9117 -5.1676 -5.9135 23 6 -8.2337 -3.6857 -7.4275 24 7 -7.9531 -2.4662 -7.8358 25 14 -9.3753 -4.7684 -8.4345 26 1 -10.5540 -5.1436 -7.6128 27 1 -9.8278 -4.0258 -9.6382 28 1 -8.6522 -5.9962 -8.8524 29 1 -0.3632 0.5104 0.8919 30 1 -0.3634 0.5171 -0.8880 31 1 -0.3633 -1.0276 -0.0038 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.8122 -1.9962 1.8000 37 1 3.3260 -2.1053 0.0244 38 1 -0.5846 -3.6112 1.7483 39 1 -1.6888 -3.2979 -0.8323 40 1 -0.7016 -4.7789 -0.8207 41 1 -2.1683 -5.6028 1.1962 42 1 -4.4377 -4.9538 0.7949 43 1 -4.4319 -2.6895 -0.5335 44 1 -3.0355 -3.3152 -1.4428 45 1 -5.1622 -5.1560 -1.6992 46 1 -5.7482 -5.1724 -4.3296 47 1 -7.1441 -4.5456 -3.4205 48 1 -8.3390 -2.1299 -8.6598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533386367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:01 Heat of formation + Delta-G solvation = -37.545774 kcal Electronic energy + Delta-G solvation = -26117.502486 eV Core-core repulsion = 22299.831897 eV Total energy + Delta-G solvation = -3817.670589 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.70882 -39.25313 -37.84549 -36.58287 -34.63962 -33.65653 -32.81008 -32.41350 -29.61390 -27.69910 -27.19618 -25.66801 -25.22121 -23.87716 -23.14264 -20.86899 -20.43543 -20.24369 -19.06049 -17.77373 -17.26993 -17.05438 -16.37113 -16.05553 -15.63105 -15.37724 -15.18843 -14.79550 -14.74857 -14.61524 -14.00361 -13.89402 -13.79124 -13.50908 -13.25124 -13.06284 -12.83340 -12.52245 -12.48270 -12.41437 -12.38044 -11.82200 -11.57082 -11.39880 -11.20246 -11.04324 -11.03294 -11.02714 -10.76100 -10.55165 -10.32750 -10.17443 -9.82881 -9.78802 -9.39517 -9.29709 -9.04816 -8.79778 -8.22509 -6.48599 -6.20051 -3.90786 1.44609 2.18051 2.93961 3.09852 3.11872 3.24517 3.29030 3.34917 3.53171 3.80558 4.17601 4.21722 4.28703 4.38913 4.46569 4.54886 4.65001 4.79818 4.86036 5.00741 5.09059 5.14709 5.14965 5.22508 5.27576 5.32493 5.47028 5.49308 5.53208 5.54345 5.58354 5.68623 5.70213 5.76315 5.77531 5.89778 5.97681 6.02115 6.09632 6.14572 6.18707 6.25508 6.30363 6.59562 7.18138 7.60481 7.69605 7.96961 8.36334 8.60736 9.24930 10.87290 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016875 B = 0.001795 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.872301 B =15597.308607 C =16695.897123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.071 4.071 3 C -0.143 4.143 4 C -0.109 4.109 5 H 0.112 0.888 6 C -0.144 4.144 7 C -0.196 4.196 8 H 0.118 0.882 9 C 0.546 3.454 10 O -0.532 6.532 11 N -0.726 5.726 12 C 0.133 3.867 13 C -0.162 4.162 14 C -0.141 4.141 15 C 0.133 3.867 16 N -0.735 5.735 17 C 0.531 3.469 18 O -0.516 6.516 19 C -0.153 4.153 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.400 0.600 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.399 0.601 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.987 -2.528 25.661 32.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.090 4.090 3 C -0.201 4.201 4 C -0.128 4.128 5 H 0.130 0.870 6 C -0.182 4.182 7 C -0.217 4.217 8 H 0.136 0.864 9 C 0.333 3.667 10 O -0.409 6.409 11 N -0.377 5.377 12 C 0.010 3.990 13 C -0.182 4.182 14 C -0.161 4.161 15 C 0.010 3.990 16 N -0.390 5.390 17 C 0.317 3.683 18 O -0.389 6.389 19 C -0.303 4.303 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.234 0.766 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.233 0.767 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.748 -0.359 24.280 31.299 hybrid contribution -1.556 -2.742 0.410 3.179 sum 18.192 -3.102 24.691 30.825 Atomic orbital electron populations 1.21938 0.94845 1.02271 1.01540 1.20775 0.95996 0.95658 0.96531 1.21809 1.00815 0.95595 1.01861 1.22477 1.01392 0.88377 1.00546 0.87003 1.23128 0.90022 1.01339 1.03676 1.22295 0.98324 1.01700 0.99405 0.86409 1.19496 0.80549 0.77459 0.89169 1.90750 1.72578 1.59349 1.18185 1.45886 1.27153 1.54478 1.10222 1.20580 0.90028 0.97622 0.90743 1.22862 0.93815 0.99573 1.01925 1.23039 0.97297 0.98359 0.97387 1.20494 0.94876 0.95026 0.88613 1.45936 1.50375 1.18477 1.24190 1.20347 0.80701 0.86375 0.80859 1.90715 1.56187 1.17961 1.74080 1.23527 1.00455 1.04953 1.01411 1.85421 1.61005 1.18529 1.18338 1.22828 1.32885 1.02395 1.10356 0.90968 1.24996 0.96507 0.95459 0.96641 1.70012 1.42370 1.15379 1.22493 0.86220 0.80308 0.79906 0.79038 1.19960 1.20810 1.19938 0.93203 0.92367 0.92262 0.89519 0.92706 0.92383 0.92855 0.87998 0.87482 0.76588 0.89551 0.90566 0.85998 0.85843 0.90738 0.90175 0.76729 0.89168 0.89189 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.71 37.16 0.32 -1.21 16 2 C -0.07 -0.65 2.32 -90.62 -0.21 -0.86 16 3 C -0.14 -1.09 9.17 37.16 0.34 -0.75 16 4 C -0.11 -0.77 5.19 -90.62 -0.47 -1.24 16 5 H 0.11 0.61 8.10 -51.93 -0.42 0.19 16 6 C -0.14 -0.97 9.69 -26.73 -0.26 -1.23 16 7 C -0.20 -1.36 6.09 -91.77 -0.56 -1.92 16 8 H 0.12 0.51 8.14 -51.94 -0.42 0.09 16 9 C 0.55 5.31 4.88 -10.98 -0.05 5.26 16 10 O -0.53 -7.29 13.70 5.55 0.08 -7.22 16 11 N -0.73 -5.48 5.55 -61.47 -0.34 -5.82 16 12 C 0.13 1.17 5.83 -5.19 -0.03 1.14 16 13 C -0.16 -1.06 9.62 -36.02 -0.35 -1.41 16 14 C -0.14 -1.05 9.62 -36.03 -0.35 -1.40 16 15 C 0.13 1.53 5.83 -5.19 -0.03 1.50 16 16 N -0.73 -9.71 5.55 -61.47 -0.34 -10.05 16 17 C 0.53 10.00 7.85 -10.98 -0.09 9.92 16 18 O -0.52 -11.92 15.86 5.55 0.09 -11.83 16 19 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 21 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 25 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.68 4.60 -51.93 -0.24 0.44 16 32 H 0.09 0.99 6.81 -51.93 -0.35 0.63 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.11 0.90 7.76 -51.93 -0.40 0.50 16 38 H 0.40 1.85 8.46 -40.82 -0.35 1.50 16 39 H 0.09 0.96 5.19 -51.93 -0.27 0.69 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.08 1.04 5.19 -51.93 -0.27 0.77 16 45 H 0.40 4.02 8.46 -40.82 -0.35 3.67 16 46 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 47 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 48 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 407.62 15.07 6.14 6.14 Total: -1.00 -36.62 407.62 -9.87 -46.49 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.69 Total: 3.43 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -1.31 Total: -8.17 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.05 Total: -41.50 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: 0.16 Total: -19.05 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.62 -9.87 -46.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533386367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.941 kcal (2) G-P(sol) polarization free energy of solvation -36.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds