Wall clock time and date at job start Sat Apr 11 2020 06:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47002 * 2 1 4 4 C 1.52998 * 109.47531 * 120.00427 * 2 1 3 5 5 H 1.08995 * 115.55894 * 272.07931 * 4 2 1 6 6 C 1.53000 * 117.49839 * 126.38745 * 4 2 1 7 7 C 1.53004 * 60.00089 * 252.50871 * 6 4 2 8 8 H 1.08987 * 117.50549 * 252.48505 * 7 6 4 9 9 C 1.50703 * 117.49278 * 107.48708 * 7 6 4 10 10 O 1.21286 * 120.00515 * 336.60919 * 9 7 6 11 11 N 1.34777 * 119.99602 * 156.32963 * 9 7 6 12 12 C 1.46507 * 119.99775 * 180.27544 * 11 9 7 13 13 C 1.50704 * 109.46773 * 180.02562 * 12 11 9 14 14 C 1.31000 * 119.99604 * 123.94395 * 13 12 11 15 15 C 1.50701 * 120.00494 * 8.73450 * 14 13 12 16 16 N 1.46500 * 109.46964 * 123.80162 * 15 14 13 17 17 C 1.34783 * 119.99620 * 180.02562 * 16 15 14 18 18 O 1.21285 * 120.00000 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99712 * 180.02562 * 17 16 15 20 20 S 1.81000 * 109.46699 * 179.97438 * 19 17 16 21 21 C 1.76205 * 99.99661 * 179.97438 * 20 19 17 22 22 H 1.07998 * 119.99985 * 0.02562 * 21 20 19 23 23 C 1.38797 * 119.99948 * 179.97438 * 21 20 19 24 24 N 1.31631 * 119.99900 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00140 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46821 * 60.00142 * 25 23 21 27 27 H 1.48494 * 109.47229 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47212 * 300.00326 * 25 23 21 29 29 H 1.08993 * 109.46698 * 299.78357 * 1 2 3 30 30 H 1.08996 * 109.47362 * 59.78524 * 1 2 3 31 31 H 1.08997 * 109.46823 * 179.78632 * 1 2 3 32 32 H 1.09004 * 109.46797 * 240.00569 * 2 1 3 33 33 H 1.08997 * 109.46847 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47578 * 300.00028 * 3 2 1 35 35 H 1.08996 * 109.47085 * 60.00788 * 3 2 1 36 36 H 1.09005 * 117.49313 * 145.02425 * 6 4 2 37 37 H 1.08996 * 117.49933 * 0.02562 * 6 4 2 38 38 H 0.97003 * 120.00162 * 0.28010 * 11 9 7 39 39 H 1.08999 * 109.47150 * 300.00201 * 12 11 9 40 40 H 1.08996 * 109.47235 * 60.00397 * 12 11 9 41 41 H 1.07998 * 120.00255 * 303.94027 * 13 12 11 42 42 H 1.07999 * 120.00081 * 188.73530 * 14 13 12 43 43 H 1.08993 * 109.47376 * 243.80543 * 15 14 13 44 44 H 1.09005 * 109.46711 * 3.80251 * 15 14 13 45 45 H 0.96993 * 120.00137 * 0.02562 * 16 15 14 46 46 H 1.09000 * 109.46987 * 299.99577 * 19 17 16 47 47 H 1.08991 * 109.47288 * 59.99977 * 19 17 16 48 48 H 0.97005 * 119.99544 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 2.1633 -0.0980 2.1347 6 6 3.0347 -1.8663 1.0471 7 6 1.5932 -2.1692 1.4609 8 1 1.4223 -2.4988 2.4856 9 6 0.6843 -2.7757 0.4230 10 8 0.9245 -2.6248 -0.7562 11 7 -0.3924 -3.4905 0.8052 12 6 -1.2727 -4.0852 -0.2038 13 6 -2.3927 -4.8257 0.4805 14 6 -3.6385 -4.5270 0.2071 15 6 -3.9567 -3.5877 -0.9276 16 7 -4.8651 -4.2483 -1.8682 17 6 -5.2880 -3.5945 -2.9684 18 8 -4.9161 -2.4597 -3.1799 19 6 -6.2229 -4.2738 -3.9357 20 16 -6.6049 -3.1457 -5.2986 21 6 -7.6812 -4.1672 -6.2487 22 1 -7.9117 -5.1676 -5.9135 23 6 -8.2337 -3.6857 -7.4275 24 7 -7.9531 -2.4662 -7.8358 25 14 -9.3753 -4.7684 -8.4345 26 1 -10.5540 -5.1436 -7.6128 27 1 -9.8278 -4.0258 -9.6382 28 1 -8.6522 -5.9962 -8.8524 29 1 -0.3632 0.5104 0.8919 30 1 -0.3634 0.5171 -0.8880 31 1 -0.3633 -1.0276 -0.0038 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.8122 -1.9962 1.8000 37 1 3.3260 -2.1053 0.0244 38 1 -0.5846 -3.6112 1.7483 39 1 -1.6888 -3.2979 -0.8323 40 1 -0.7016 -4.7789 -0.8207 41 1 -2.1683 -5.6028 1.1962 42 1 -4.4377 -4.9538 0.7949 43 1 -4.4319 -2.6895 -0.5335 44 1 -3.0355 -3.3152 -1.4428 45 1 -5.1622 -5.1560 -1.6992 46 1 -5.7482 -5.1724 -4.3296 47 1 -7.1441 -4.5456 -3.4205 48 1 -8.3390 -2.1299 -8.6598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533386367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:00 Heat of formation + Delta-G solvation = -63.844128 kcal Electronic energy + Delta-G solvation = -26118.642868 eV Core-core repulsion = 22299.831897 eV Total energy + Delta-G solvation = -3818.810971 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.42876 -40.66832 -38.56146 -37.45935 -35.68302 -34.59236 -34.35447 -33.78160 -31.09046 -28.54610 -27.99818 -27.66523 -26.33371 -24.53442 -23.74679 -21.87830 -21.54270 -20.96071 -20.11767 -19.44039 -18.01045 -17.94508 -17.74172 -16.95275 -16.88638 -16.73278 -16.51249 -16.05673 -15.76319 -15.60097 -15.36396 -14.81973 -14.68484 -14.52488 -14.44492 -14.27632 -14.04310 -13.69954 -13.37676 -13.18007 -13.13369 -13.09433 -13.04388 -12.86556 -12.63235 -12.19498 -12.10243 -11.97341 -11.76077 -11.74578 -11.17290 -11.13505 -11.12048 -10.95610 -10.86375 -10.40119 -10.28860 -10.26949 -9.82978 -8.68449 -8.35013 -6.13908 0.78864 1.28355 1.43769 1.46729 1.47659 1.57396 1.58068 2.25465 2.27525 2.47782 2.94571 2.98907 3.32115 3.58874 3.61927 3.81883 3.87134 3.92024 4.00679 4.03788 4.07386 4.19358 4.28359 4.37219 4.38791 4.43071 4.49291 4.63147 4.65690 4.70842 4.74063 4.86143 4.90450 4.94128 4.99674 5.03184 5.18951 5.28049 5.29024 5.33500 5.40815 5.42068 5.46567 5.54192 5.70987 6.18994 6.48785 6.57555 7.05767 7.21893 7.29355 8.74026 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016875 B = 0.001795 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.872301 B =15597.308607 C =16695.897123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.109 4.109 5 H 0.140 0.860 6 C -0.142 4.142 7 C -0.194 4.194 8 H 0.155 0.845 9 C 0.536 3.464 10 O -0.582 6.582 11 N -0.711 5.711 12 C 0.130 3.870 13 C -0.138 4.138 14 C -0.141 4.141 15 C 0.130 3.870 16 N -0.706 5.706 17 C 0.531 3.469 18 O -0.568 6.568 19 C -0.128 4.128 20 S -0.156 6.156 21 C -0.547 4.547 22 H 0.085 0.915 23 C 0.011 3.989 24 N -0.912 5.912 25 Si 1.000 3.000 26 H -0.260 1.260 27 H -0.279 1.279 28 H -0.262 1.262 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.132 0.868 37 H 0.080 0.920 38 H 0.418 0.582 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.159 0.841 42 H 0.155 0.845 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.419 0.581 46 H 0.110 0.890 47 H 0.114 0.886 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.871 -5.157 29.075 35.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.091 4.091 3 C -0.197 4.197 4 C -0.128 4.128 5 H 0.158 0.842 6 C -0.179 4.179 7 C -0.215 4.215 8 H 0.173 0.827 9 C 0.325 3.675 10 O -0.463 6.463 11 N -0.364 5.364 12 C 0.006 3.994 13 C -0.157 4.157 14 C -0.160 4.160 15 C 0.007 3.993 16 N -0.361 5.361 17 C 0.317 3.683 18 O -0.447 6.447 19 C -0.279 4.279 20 S 0.071 5.929 21 C -0.694 4.694 22 H 0.103 0.897 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.822 3.178 26 H -0.185 1.185 27 H -0.204 1.204 28 H -0.186 1.186 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.150 0.850 37 H 0.099 0.901 38 H 0.255 0.745 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.177 0.823 42 H 0.173 0.827 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.256 0.744 46 H 0.129 0.871 47 H 0.132 0.868 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.627 -3.052 27.782 34.153 hybrid contribution -1.422 -1.936 -0.577 2.471 sum 18.205 -4.988 27.205 33.112 Atomic orbital electron populations 1.21920 0.96027 1.01215 1.01282 1.20702 0.94989 0.96708 0.96664 1.21777 1.01409 0.94453 1.02045 1.22512 1.01508 0.88566 1.00199 0.84227 1.23161 0.90683 1.00900 1.03192 1.22428 0.97620 1.01356 1.00062 0.82727 1.20130 0.81058 0.77124 0.89141 1.90736 1.73879 1.61141 1.20541 1.45756 1.26178 1.53466 1.10951 1.20474 0.90910 0.96780 0.91202 1.22968 0.92256 0.99114 1.01409 1.22938 0.98530 0.98043 0.96530 1.20575 0.93334 0.95978 0.89429 1.45659 1.49066 1.18955 1.22405 1.20157 0.80494 0.85766 0.81925 1.90704 1.58195 1.20244 1.75539 1.23362 1.02145 1.03374 0.99019 1.85643 1.61817 1.22917 1.22537 1.23178 1.32796 1.02722 1.10733 0.89731 1.26173 0.98245 0.96959 0.97954 1.70191 1.43873 1.17636 1.23139 0.84976 0.77986 0.77797 0.77062 1.18495 1.20443 1.18643 0.91465 0.94523 0.93678 0.92857 0.91699 0.93579 0.91283 0.84997 0.90115 0.74454 0.92587 0.91870 0.82307 0.82731 0.91854 0.92126 0.74354 0.87141 0.86819 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.71 71.98 0.63 -2.59 16 2 C -0.07 -1.37 2.32 -10.79 -0.03 -1.39 16 3 C -0.14 -2.10 9.17 71.98 0.66 -1.44 16 4 C -0.11 -1.38 5.19 -10.79 -0.06 -1.43 16 5 H 0.14 1.03 8.10 -2.39 -0.02 1.01 16 6 C -0.14 -1.73 9.69 30.60 0.30 -1.43 16 7 C -0.19 -2.34 6.09 -11.54 -0.07 -2.41 16 8 H 0.16 0.71 8.14 -2.39 -0.02 0.69 16 9 C 0.54 10.48 4.88 87.66 0.43 10.91 16 10 O -0.58 -17.28 13.70 -3.05 -0.04 -17.32 16 11 N -0.71 -10.02 5.55 -466.76 -2.59 -12.61 16 12 C 0.13 2.26 5.83 85.63 0.50 2.76 16 13 C -0.14 -1.41 9.62 25.65 0.25 -1.16 16 14 C -0.14 -1.70 9.62 25.65 0.25 -1.46 16 15 C 0.13 2.93 5.83 85.63 0.50 3.43 16 16 N -0.71 -17.86 5.55 -466.77 -2.59 -20.45 16 17 C 0.53 20.16 7.85 87.66 0.69 20.85 16 18 O -0.57 -27.57 15.86 -3.05 -0.05 -27.62 16 19 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 20 S -0.16 -8.88 20.57 -56.49 -1.16 -10.04 16 21 C -0.55 -31.59 9.50 67.95 0.65 -30.94 16 22 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 23 C 0.01 0.65 5.49 84.86 0.47 1.12 16 24 N -0.91 -56.95 13.22 21.65 0.29 -56.66 16 25 Si 1.00 44.00 29.55 68.60 2.03 46.02 16 26 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 27 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 28 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 1.10 4.60 -2.39 -0.01 1.09 16 32 H 0.05 1.36 6.81 -2.38 -0.02 1.34 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.13 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.08 1.44 7.76 -2.39 -0.02 1.42 16 38 H 0.42 2.72 8.46 -92.71 -0.78 1.93 16 39 H 0.06 1.35 5.19 -2.39 -0.01 1.34 16 40 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 42 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 43 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.06 1.66 5.19 -2.38 -0.01 1.65 16 45 H 0.42 7.26 8.46 -92.71 -0.78 6.48 16 46 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 47 H 0.11 4.02 8.14 -2.40 -0.02 4.01 16 48 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 Total: -1.00 -87.01 407.62 0.88 -86.13 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.59 Total: 22.43 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 5.59 Total: -9.88 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -4.89 Total: -89.72 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -0.09 Total: -44.94 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.16 Total: -10.04 kcal Total: -87.01 0.88 -86.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533386367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.286 kcal (2) G-P(sol) polarization free energy of solvation -87.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds