Wall clock time and date at job start Sat Apr 11 2020 06:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 119.99865 * 2 1 4 4 C 1.53002 * 109.47295 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47075 * 239.99679 * 3 2 1 6 6 C 1.53005 * 109.47097 * 119.99729 * 3 2 1 7 7 C 1.50700 * 109.47097 * 179.97438 * 6 3 2 8 8 O 1.21282 * 120.00038 * 359.97438 * 7 6 3 9 9 N 1.34773 * 119.99864 * 180.02562 * 7 6 3 10 10 C 1.46502 * 120.00112 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47315 * 184.96420 * 10 9 7 12 12 H 1.08996 * 112.73509 * 45.08604 * 11 10 9 13 13 C 1.53499 * 113.46440 * 274.26648 * 11 10 9 14 14 C 1.53764 * 83.25318 * 218.98269 * 13 11 10 15 15 N 1.47063 * 87.88895 * 26.24122 * 14 13 11 16 16 C 1.34779 * 136.05692 * 152.96293 * 15 14 13 17 17 O 1.21287 * 119.99657 * 174.58788 * 16 15 14 18 18 C 1.50696 * 119.99960 * 354.31625 * 16 15 14 19 19 S 1.81004 * 109.46806 * 180.27507 * 18 16 15 20 20 C 1.76199 * 99.99740 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00150 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00141 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99886 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00298 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46904 * 89.99710 * 24 22 20 26 26 H 1.48496 * 109.47267 * 209.99716 * 24 22 20 27 27 H 1.48506 * 109.47019 * 330.00111 * 24 22 20 28 28 H 1.07997 * 120.00079 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.99930 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.00079 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47158 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.47165 * 299.99982 * 4 3 2 33 33 H 1.09005 * 109.46904 * 59.99920 * 4 3 2 34 34 H 1.09007 * 109.46879 * 300.00177 * 5 3 2 35 35 H 1.08995 * 109.47089 * 60.00199 * 5 3 2 36 36 H 1.08995 * 109.46843 * 180.02562 * 5 3 2 37 37 H 1.08997 * 109.47212 * 59.99702 * 6 3 2 38 38 H 1.08996 * 109.47031 * 300.00023 * 6 3 2 39 39 H 0.96998 * 120.00514 * 0.02562 * 9 7 6 40 40 H 1.09000 * 109.46722 * 64.96009 * 10 9 7 41 41 H 1.09001 * 109.47366 * 304.96564 * 10 9 7 42 42 H 1.08994 * 114.20538 * 332.73381 * 13 11 10 43 43 H 1.08999 * 114.20357 * 105.37110 * 13 11 10 44 44 H 1.08995 * 113.46375 * 271.50141 * 14 13 11 45 45 H 1.09003 * 113.54915 * 140.98526 * 14 13 11 46 46 H 1.08993 * 109.47289 * 300.27612 * 18 16 15 47 47 H 1.09000 * 109.46887 * 60.28112 * 18 16 15 48 48 H 0.96995 * 120.00092 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4681 -0.0006 5 6 2.9432 1.3861 -1.2492 6 6 2.9431 1.3862 1.2493 7 6 3.6971 2.6910 1.2490 8 8 3.5461 3.4784 0.3389 9 7 4.5398 2.9826 2.2595 10 6 5.2732 4.2508 2.2590 11 6 6.2444 4.2789 3.4409 12 1 6.7992 3.3473 3.5525 13 6 5.6043 4.7709 4.7464 14 6 6.9588 5.4743 4.9331 15 7 7.0981 5.4761 3.4691 16 6 7.7335 6.2366 2.5557 17 8 7.7307 5.9105 1.3874 18 6 8.4422 7.4954 2.9849 19 16 9.1847 8.2925 1.5394 20 6 9.9248 9.6940 2.3094 21 1 9.8309 9.8366 3.3758 22 6 10.6275 10.6153 1.5452 23 7 10.7415 10.4418 0.2454 24 14 11.4115 12.1015 2.3614 25 1 12.7962 11.7641 2.7785 26 1 11.4459 13.2332 1.4006 27 1 10.6157 12.4885 3.5540 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.6143 3.4120 -0.0011 32 1 0.4430 2.4101 -0.8908 33 1 0.4423 2.4105 0.8892 34 1 3.6515 0.5576 -1.2491 35 1 2.3166 1.3284 -2.1392 36 1 3.4885 2.3299 -1.2489 37 1 3.6514 0.5577 1.2494 38 1 2.3164 1.3285 2.1392 39 1 4.6614 2.3524 2.9868 40 1 4.5688 5.0778 2.3477 41 1 5.8314 4.3474 1.3277 42 1 4.7617 5.4474 4.6038 43 1 5.4055 3.9819 5.4717 44 1 7.7018 4.8580 5.4392 45 1 6.8755 6.4728 5.3624 46 1 7.7270 8.1753 3.4475 47 1 9.2231 7.2457 3.7032 48 1 11.2329 11.0854 -0.2886 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001534834356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:11 Heat of formation + Delta-G solvation = -16.439781 kcal Electronic energy + Delta-G solvation = -26685.575037 eV Core-core repulsion = 22868.819672 eV Total energy + Delta-G solvation = -3816.755365 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.74139 -40.11514 -37.69049 -37.30077 -34.79515 -32.43386 -31.65520 -30.82003 -29.42695 -28.21601 -27.44939 -27.34638 -25.47961 -23.58043 -22.55483 -22.10814 -20.74226 -18.94916 -18.47086 -17.76435 -17.31288 -16.70930 -16.49195 -15.81948 -15.65534 -15.29722 -15.13528 -14.80743 -14.68910 -14.30147 -14.14366 -13.94032 -13.87269 -13.47453 -13.09105 -12.86403 -12.72815 -12.50211 -12.32915 -12.14751 -11.97812 -11.94196 -11.67477 -11.48659 -11.34740 -11.17965 -11.06925 -11.03456 -10.87986 -10.78066 -10.76550 -9.83071 -9.71378 -9.65158 -9.42608 -9.13590 -9.07173 -8.69208 -8.24392 -6.51065 -6.21896 -3.92953 1.95887 2.48400 2.53486 2.96961 3.12788 3.22052 3.26747 3.30412 3.57028 4.03472 4.19597 4.35669 4.47388 4.52637 4.63147 4.64684 4.78117 4.87940 4.91914 4.97000 5.08631 5.13175 5.14427 5.23512 5.29105 5.34806 5.42917 5.50824 5.50861 5.63211 5.63672 5.78529 5.79763 5.81491 5.83397 5.91782 5.92797 6.02206 6.12272 6.21055 6.25556 6.29538 6.46737 6.51139 7.27962 7.58965 7.79755 8.09747 8.34658 8.50491 9.23115 10.85528 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.001928 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.582360 B =14522.282202 C =15469.549675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C -0.020 4.020 4 C -0.156 4.156 5 C -0.151 4.151 6 C -0.127 4.127 7 C 0.511 3.489 8 O -0.523 6.523 9 N -0.729 5.729 10 C 0.112 3.888 11 C 0.123 3.877 12 H 0.094 0.906 13 C -0.152 4.152 14 C 0.101 3.899 15 N -0.647 5.647 16 C 0.561 3.439 17 O -0.508 6.508 18 C -0.144 4.144 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.398 0.602 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.096 -21.910 10.382 30.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.163 4.163 3 C -0.021 4.021 4 C -0.213 4.213 5 C -0.208 4.208 6 C -0.167 4.167 7 C 0.298 3.702 8 O -0.399 6.399 9 N -0.381 5.381 10 C -0.012 4.012 11 C 0.019 3.981 12 H 0.111 0.889 13 C -0.190 4.190 14 C -0.022 4.022 15 N -0.387 5.387 16 C 0.351 3.649 17 O -0.381 6.381 18 C -0.294 4.294 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.231 0.769 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.993 -21.561 7.610 29.095 hybrid contribution 0.718 0.843 2.339 2.588 sum -17.275 -20.718 9.949 28.751 Atomic orbital electron populations 1.24026 0.96195 1.02080 1.01078 1.22949 0.95923 0.97567 0.99817 1.19381 0.94946 0.93279 0.94473 1.22186 0.98535 0.99701 1.00881 1.22072 0.99225 1.03738 0.95777 1.21701 0.99225 0.95568 1.00210 1.20645 0.79373 0.88633 0.81541 1.90640 1.63816 1.50497 1.34924 1.45903 1.45396 1.21232 1.25591 1.21574 0.94069 0.85645 0.99959 1.22752 0.90314 0.90774 0.94299 0.88851 1.23635 0.97496 1.01048 0.96801 1.22931 0.95650 1.01819 0.81816 1.49767 1.52190 1.28913 1.07867 1.20021 0.76645 0.83803 0.84462 1.90732 1.58495 1.71658 1.17261 1.23467 1.02390 0.96459 1.07127 1.85443 1.66301 1.26184 1.05298 1.22856 1.39424 1.09751 0.96393 0.90927 1.24998 0.95666 0.98095 0.94812 1.70018 1.39371 1.36012 1.04800 0.86160 0.79403 0.80901 0.78983 1.20263 1.20717 1.19698 0.87779 0.88770 0.87536 0.89451 0.92736 0.93281 0.93373 0.92912 0.89301 0.88840 0.88892 0.76852 0.90988 0.89214 0.88428 0.89284 0.89738 0.89975 0.89237 0.89375 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.31 13.70 29.01 0.40 -0.91 16 2 C -0.14 -1.02 8.76 -36.03 -0.32 -1.33 16 3 C -0.02 -0.17 0.74 -155.66 -0.11 -0.29 16 4 C -0.16 -1.46 6.83 37.16 0.25 -1.20 16 5 C -0.15 -1.51 8.16 37.16 0.30 -1.20 16 6 C -0.13 -0.89 4.75 -27.88 -0.13 -1.03 16 7 C 0.51 5.29 7.24 -10.99 -0.08 5.21 16 8 O -0.52 -7.63 11.34 5.56 0.06 -7.57 16 9 N -0.73 -6.27 5.55 -60.29 -0.33 -6.60 16 10 C 0.11 1.33 5.47 -4.04 -0.02 1.31 16 11 C 0.12 1.22 4.06 -72.40 -0.29 0.92 16 12 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 13 C -0.15 -1.01 8.03 -26.08 -0.21 -1.22 16 14 C 0.10 0.89 8.43 -8.37 -0.07 0.82 16 15 N -0.65 -8.86 3.56 -177.28 -0.63 -9.49 16 16 C 0.56 10.84 7.97 -10.99 -0.09 10.76 16 17 O -0.51 -11.89 15.47 5.55 0.09 -11.81 16 18 C -0.14 -2.98 5.99 36.00 0.22 -2.76 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 21 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 24 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 H 0.10 0.70 5.69 -52.49 -0.30 0.40 16 29 H 0.09 0.51 8.06 -52.49 -0.42 0.09 16 30 H 0.11 0.64 8.06 -52.49 -0.42 0.22 16 31 H 0.09 1.04 5.52 -51.93 -0.29 0.76 16 32 H 0.05 0.49 7.50 -51.93 -0.39 0.10 16 33 H 0.05 0.40 7.50 -51.93 -0.39 0.01 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 1.13 5.51 -51.93 -0.29 0.85 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.40 1.95 8.48 -40.82 -0.35 1.61 16 40 H 0.07 0.94 7.89 -51.93 -0.41 0.53 16 41 H 0.09 1.49 7.15 -51.93 -0.37 1.11 16 42 H 0.10 0.70 7.95 -51.93 -0.41 0.29 16 43 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 47 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 48 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 402.53 15.07 6.07 6.07 Total: -1.00 -36.90 402.53 -9.02 -45.91 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.81 Total: 0.50 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 0.04 Total: -4.01 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: -0.23 Total: -41.73 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.15 Total: -19.38 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.90 -9.02 -45.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534834356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.474 kcal (2) G-P(sol) polarization free energy of solvation -36.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds