Wall clock time and date at job start Sat Apr 11 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 119.99865 * 2 1 4 4 C 1.53002 * 109.47295 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47075 * 239.99679 * 3 2 1 6 6 C 1.53005 * 109.47097 * 119.99729 * 3 2 1 7 7 C 1.50700 * 109.47097 * 179.97438 * 6 3 2 8 8 O 1.21282 * 120.00038 * 359.97438 * 7 6 3 9 9 N 1.34773 * 119.99864 * 180.02562 * 7 6 3 10 10 C 1.46502 * 120.00112 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47315 * 184.96420 * 10 9 7 12 12 H 1.08996 * 112.73509 * 45.08604 * 11 10 9 13 13 C 1.53499 * 113.46440 * 274.26648 * 11 10 9 14 14 C 1.53764 * 83.25318 * 218.98269 * 13 11 10 15 15 N 1.47063 * 87.88895 * 26.24122 * 14 13 11 16 16 C 1.34779 * 136.05692 * 152.96293 * 15 14 13 17 17 O 1.21287 * 119.99657 * 174.58788 * 16 15 14 18 18 C 1.50696 * 119.99960 * 354.31625 * 16 15 14 19 19 S 1.81004 * 109.46806 * 180.27507 * 18 16 15 20 20 C 1.76199 * 99.99740 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00150 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00141 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99886 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00298 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46904 * 89.99710 * 24 22 20 26 26 H 1.48496 * 109.47267 * 209.99716 * 24 22 20 27 27 H 1.48506 * 109.47019 * 330.00111 * 24 22 20 28 28 H 1.07997 * 120.00079 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.99930 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.00079 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47158 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.47165 * 299.99982 * 4 3 2 33 33 H 1.09005 * 109.46904 * 59.99920 * 4 3 2 34 34 H 1.09007 * 109.46879 * 300.00177 * 5 3 2 35 35 H 1.08995 * 109.47089 * 60.00199 * 5 3 2 36 36 H 1.08995 * 109.46843 * 180.02562 * 5 3 2 37 37 H 1.08997 * 109.47212 * 59.99702 * 6 3 2 38 38 H 1.08996 * 109.47031 * 300.00023 * 6 3 2 39 39 H 0.96998 * 120.00514 * 0.02562 * 9 7 6 40 40 H 1.09000 * 109.46722 * 64.96009 * 10 9 7 41 41 H 1.09001 * 109.47366 * 304.96564 * 10 9 7 42 42 H 1.08994 * 114.20538 * 332.73381 * 13 11 10 43 43 H 1.08999 * 114.20357 * 105.37110 * 13 11 10 44 44 H 1.08995 * 113.46375 * 271.50141 * 14 13 11 45 45 H 1.09003 * 113.54915 * 140.98526 * 14 13 11 46 46 H 1.08993 * 109.47289 * 300.27612 * 18 16 15 47 47 H 1.09000 * 109.46887 * 60.28112 * 18 16 15 48 48 H 0.96995 * 120.00092 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4681 -0.0006 5 6 2.9432 1.3861 -1.2492 6 6 2.9431 1.3862 1.2493 7 6 3.6971 2.6910 1.2490 8 8 3.5461 3.4784 0.3389 9 7 4.5398 2.9826 2.2595 10 6 5.2732 4.2508 2.2590 11 6 6.2444 4.2789 3.4409 12 1 6.7992 3.3473 3.5525 13 6 5.6043 4.7709 4.7464 14 6 6.9588 5.4743 4.9331 15 7 7.0981 5.4761 3.4691 16 6 7.7335 6.2366 2.5557 17 8 7.7307 5.9105 1.3874 18 6 8.4422 7.4954 2.9849 19 16 9.1847 8.2925 1.5394 20 6 9.9248 9.6940 2.3094 21 1 9.8309 9.8366 3.3758 22 6 10.6275 10.6153 1.5452 23 7 10.7415 10.4418 0.2454 24 14 11.4115 12.1015 2.3614 25 1 12.7962 11.7641 2.7785 26 1 11.4459 13.2332 1.4006 27 1 10.6157 12.4885 3.5540 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.6143 3.4120 -0.0011 32 1 0.4430 2.4101 -0.8908 33 1 0.4423 2.4105 0.8892 34 1 3.6515 0.5576 -1.2491 35 1 2.3166 1.3284 -2.1392 36 1 3.4885 2.3299 -1.2489 37 1 3.6514 0.5577 1.2494 38 1 2.3164 1.3285 2.1392 39 1 4.6614 2.3524 2.9868 40 1 4.5688 5.0778 2.3477 41 1 5.8314 4.3474 1.3277 42 1 4.7617 5.4474 4.6038 43 1 5.4055 3.9819 5.4717 44 1 7.7018 4.8580 5.4392 45 1 6.8755 6.4728 5.3624 46 1 7.7270 8.1753 3.4475 47 1 9.2231 7.2457 3.7032 48 1 11.2329 11.0854 -0.2886 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001534834356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:10 Heat of formation + Delta-G solvation = -42.885897 kcal Electronic energy + Delta-G solvation = -26686.721827 eV Core-core repulsion = 22868.819672 eV Total energy + Delta-G solvation = -3817.902154 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.69147 -41.01536 -38.98000 -38.09566 -35.71167 -34.61658 -32.37226 -32.06156 -30.28554 -29.46956 -28.20796 -28.14250 -27.66331 -24.35671 -23.30432 -23.06261 -21.56879 -20.25945 -19.49231 -19.08177 -18.22020 -17.89238 -17.43897 -16.92406 -16.84093 -16.58292 -16.32053 -16.22396 -15.71267 -15.61471 -15.18467 -15.01748 -14.78329 -14.55776 -14.25331 -13.99611 -13.84500 -13.57646 -13.40591 -13.18613 -13.09628 -12.91132 -12.88264 -12.67531 -12.63422 -12.41554 -12.27279 -12.01364 -11.83847 -11.76395 -11.60574 -11.51675 -11.16838 -10.88033 -10.51690 -10.31996 -10.21922 -10.07666 -9.79532 -8.72061 -8.37217 -6.16930 1.16749 1.39481 1.41120 1.44737 1.52977 1.54001 1.68486 1.84588 2.24674 2.38220 2.96811 3.18809 3.33953 3.66217 3.69274 3.76228 3.85498 3.98969 4.01715 4.03712 4.21071 4.23663 4.40517 4.41545 4.48285 4.49554 4.59984 4.66238 4.69482 4.74551 4.77237 4.82397 4.96876 4.98961 5.01704 5.04982 5.10983 5.20155 5.28527 5.38204 5.38676 5.45593 5.63940 5.80595 5.98531 6.16788 6.59595 6.60780 7.03362 7.09196 7.36217 8.72228 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.001928 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.582360 B =14522.282202 C =15469.549675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C -0.022 4.022 4 C -0.152 4.152 5 C -0.149 4.149 6 C -0.117 4.117 7 C 0.503 3.497 8 O -0.573 6.573 9 N -0.710 5.710 10 C 0.122 3.878 11 C 0.120 3.880 12 H 0.122 0.878 13 C -0.123 4.123 14 C 0.094 3.906 15 N -0.652 5.652 16 C 0.555 3.445 17 O -0.567 6.567 18 C -0.116 4.116 19 S -0.156 6.156 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.002 2.998 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.257 1.257 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.421 0.579 40 H 0.053 0.947 41 H 0.034 0.966 42 H 0.093 0.907 43 H 0.140 0.860 44 H 0.115 0.885 45 H 0.087 0.913 46 H 0.104 0.896 47 H 0.107 0.893 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.025 -23.953 14.812 33.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.165 4.165 3 C -0.022 4.022 4 C -0.209 4.209 5 C -0.207 4.207 6 C -0.157 4.157 7 C 0.291 3.709 8 O -0.453 6.453 9 N -0.364 5.364 10 C -0.004 4.004 11 C 0.017 3.983 12 H 0.139 0.861 13 C -0.160 4.160 14 C -0.027 4.027 15 N -0.389 5.389 16 C 0.345 3.655 17 O -0.445 6.445 18 C -0.267 4.267 19 S 0.072 5.928 20 C -0.694 4.694 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.823 3.177 25 H -0.191 1.191 26 H -0.203 1.203 27 H -0.181 1.181 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.141 0.859 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.259 0.741 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.111 0.889 43 H 0.158 0.842 44 H 0.133 0.867 45 H 0.106 0.894 46 H 0.122 0.878 47 H 0.125 0.875 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.953 -23.667 12.149 32.664 hybrid contribution 0.884 1.363 1.003 1.909 sum -18.069 -22.304 13.151 31.574 Atomic orbital electron populations 1.24158 0.96195 1.02626 1.00229 1.22903 0.95978 0.97053 1.00531 1.19375 0.94763 0.93816 0.94293 1.22117 0.98591 0.98810 1.01417 1.22013 0.99475 1.02290 0.96889 1.21734 0.99462 0.93884 1.00596 1.21421 0.79205 0.89391 0.80847 1.90653 1.65362 1.52341 1.36897 1.45680 1.44276 1.20402 1.26063 1.21223 0.93808 0.86761 0.98602 1.23183 0.89707 0.90522 0.94912 0.86057 1.23585 0.95924 1.01591 0.94908 1.23416 0.97678 1.03257 0.78361 1.49844 1.50192 1.29093 1.09779 1.19715 0.77119 0.84155 0.84552 1.90710 1.60986 1.73037 1.19809 1.23246 1.02841 0.97134 1.03522 1.85662 1.67733 1.27965 1.11484 1.23190 1.39517 1.09816 0.96879 0.89828 1.26188 0.96043 1.01652 0.95376 1.70196 1.40439 1.37464 1.06754 0.84909 0.78572 0.76084 0.78124 1.19097 1.20286 1.18072 0.88303 0.87233 0.85883 0.92586 0.93080 0.91828 0.92224 0.93319 0.92684 0.86258 0.85974 0.74110 0.92908 0.94766 0.88881 0.84231 0.86726 0.89434 0.87812 0.87513 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.15 13.70 67.77 0.93 -1.22 16 2 C -0.15 -1.71 8.76 25.64 0.22 -1.49 16 3 C -0.02 -0.35 0.74 -52.93 -0.04 -0.39 16 4 C -0.15 -2.89 6.83 71.98 0.49 -2.40 16 5 C -0.15 -3.09 8.16 71.98 0.59 -2.50 16 6 C -0.12 -1.39 4.75 29.85 0.14 -1.25 16 7 C 0.50 10.37 7.24 87.66 0.63 11.00 16 8 O -0.57 -18.16 11.34 -3.03 -0.03 -18.20 16 9 N -0.71 -11.40 5.55 -463.05 -2.57 -13.97 16 10 C 0.12 2.98 5.47 86.38 0.47 3.45 16 11 C 0.12 2.11 4.06 41.79 0.17 2.27 16 12 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 13 C -0.12 -1.07 8.03 31.02 0.25 -0.82 16 14 C 0.09 1.27 8.43 83.27 0.70 1.97 16 15 N -0.65 -17.07 3.56 -833.18 -2.97 -20.04 16 16 C 0.56 22.11 7.97 87.66 0.70 22.81 16 17 O -0.57 -28.48 15.47 -3.05 -0.05 -28.53 16 18 C -0.12 -4.89 5.99 71.23 0.43 -4.46 16 19 S -0.16 -9.01 20.57 -56.49 -1.16 -10.17 16 20 C -0.55 -31.94 9.50 67.96 0.65 -31.29 16 21 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 22 C 0.01 0.70 5.49 84.86 0.47 1.17 16 23 N -0.91 -57.33 13.22 21.65 0.29 -57.04 16 24 Si 1.00 44.20 29.55 68.60 2.03 46.22 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 28 H 0.10 1.18 5.69 -2.91 -0.02 1.16 16 29 H 0.11 0.88 8.06 -2.91 -0.02 0.86 16 30 H 0.12 1.06 8.06 -2.91 -0.02 1.04 16 31 H 0.06 1.45 5.52 -2.39 -0.01 1.44 16 32 H 0.05 0.96 7.50 -2.39 -0.02 0.94 16 33 H 0.06 0.97 7.50 -2.38 -0.02 0.96 16 34 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 1.54 5.51 -2.39 -0.01 1.53 16 37 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.42 2.68 8.48 -92.71 -0.79 1.89 16 40 H 0.05 1.47 7.89 -2.39 -0.02 1.45 16 41 H 0.03 1.24 7.15 -2.39 -0.02 1.23 16 42 H 0.09 1.00 7.95 -2.39 -0.02 0.98 16 43 H 0.14 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.10 4.00 8.14 -2.40 -0.02 3.98 16 47 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 48 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -90.76 402.53 2.50 -88.27 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.17 Total: 16.60 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 6.80 Total: -3.14 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -5.25 Total: -91.05 kcal Atomic # 8 Polarization: -46.65 SS G_CDS: -0.08 Total: -46.73 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.16 Total: -10.17 kcal Total: -90.76 2.50 -88.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534834356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.382 kcal (2) G-P(sol) polarization free energy of solvation -90.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds