Wall clock time and date at job start Sat Apr 11 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46808 * 2 1 4 4 C 1.50702 * 109.47038 * 179.97438 * 3 2 1 5 5 O 1.21288 * 119.99735 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00297 * 180.02562 * 4 3 2 7 7 C 1.46379 * 120.54837 * 359.68766 * 6 4 3 8 8 C 1.53596 * 108.62506 * 125.75212 * 7 6 4 9 9 H 1.08998 * 110.59841 * 172.23541 * 8 7 6 10 10 C 1.53369 * 109.20096 * 294.16574 * 8 7 6 11 11 C 1.53011 * 109.24704 * 60.51835 * 10 8 7 12 12 C 1.53015 * 109.79245 * 60.59186 * 11 10 8 13 13 C 1.54995 * 109.05167 * 299.03221 * 12 11 10 14 14 H 1.08993 * 110.48663 * 177.58158 * 13 12 11 15 15 C 1.46946 * 120.44308 * 180.02562 * 6 4 3 16 16 N 1.47567 * 107.76417 * 51.21957 * 8 7 6 17 17 C 1.34777 * 121.61248 * 120.50826 * 16 8 7 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 8 19 19 C 1.50703 * 120.00161 * 179.97438 * 17 16 8 20 20 S 1.81002 * 109.47178 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00092 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00019 * 0.02562 * 21 20 19 23 23 C 1.38795 * 119.99810 * 179.97438 * 21 20 19 24 24 N 1.31635 * 119.99575 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00242 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47244 * 90.00194 * 25 23 21 27 27 H 1.48498 * 109.47205 * 209.99923 * 25 23 21 28 28 H 1.48496 * 109.47344 * 330.00405 * 25 23 21 29 29 H 1.09001 * 109.47228 * 300.00602 * 1 2 3 30 30 H 1.09003 * 109.46656 * 60.00028 * 1 2 3 31 31 H 1.09000 * 109.47102 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46973 * 239.99903 * 2 1 3 33 33 H 1.08993 * 109.47027 * 119.99580 * 2 1 3 34 34 H 1.09002 * 109.47470 * 60.00189 * 3 2 1 35 35 H 1.09003 * 109.47049 * 299.99765 * 3 2 1 36 36 H 1.08999 * 109.49327 * 6.06956 * 7 6 4 37 37 H 1.08993 * 109.68020 * 245.55126 * 7 6 4 38 38 H 1.08997 * 109.50815 * 180.45646 * 10 8 7 39 39 H 1.09005 * 109.50382 * 300.54753 * 10 8 7 40 40 H 1.09005 * 109.41350 * 180.68365 * 11 10 8 41 41 H 1.08997 * 109.42441 * 300.49128 * 11 10 8 42 42 H 1.09000 * 109.49965 * 59.36992 * 12 11 10 43 43 H 1.08999 * 109.50209 * 179.44473 * 12 11 10 44 44 H 1.09003 * 109.62480 * 114.52147 * 15 6 4 45 45 H 1.08999 * 109.63168 * 353.94125 * 15 6 4 46 46 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 47 47 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 48 48 H 0.97007 * 119.99682 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1535 0.3922 0.0015 6 7 4.2209 2.6098 0.0013 7 6 3.5012 3.8844 -0.0055 8 6 3.9945 4.7326 1.1762 9 1 3.5815 5.7399 1.1240 10 6 3.5905 4.0512 2.4895 11 6 4.2354 2.6653 2.5579 12 6 5.7591 2.8003 2.5166 13 6 6.1712 3.4758 1.1839 14 1 7.2507 3.6224 1.1484 15 6 5.6903 2.6211 0.0013 16 7 5.4685 4.7718 1.1180 17 6 6.1403 5.9346 1.0043 18 8 5.5329 6.9828 0.9478 19 6 7.6463 5.9324 0.9487 20 16 8.2470 7.6332 0.7974 21 6 9.9841 7.3415 0.7543 22 1 10.3639 6.3324 0.8160 23 6 10.8643 8.4086 0.6399 24 7 12.1620 8.1906 0.6073 25 14 10.2073 10.1538 0.5310 26 1 10.0851 10.7229 1.8972 27 1 11.1413 10.9852 -0.2699 28 1 8.8730 10.1407 -0.1208 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 2.4321 3.6990 0.0981 37 1 3.6954 4.4106 -0.9401 38 1 3.9312 4.6533 3.3318 39 1 2.5058 3.9509 2.5288 40 1 3.9402 2.1737 3.4849 41 1 3.9015 2.0678 1.7097 42 1 6.0937 3.4054 3.3592 43 1 6.2137 1.8114 2.5756 44 1 6.0532 3.0506 -0.9325 45 1 6.0644 1.6030 0.1092 46 1 7.9772 5.3519 0.0875 47 1 8.0430 5.4872 1.8611 48 1 12.7772 8.9364 0.5277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536188129.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:15 Heat of formation + Delta-G solvation = -55.882704 kcal Electronic energy + Delta-G solvation = -28797.697734 eV Core-core repulsion = 24979.231996 eV Total energy + Delta-G solvation = -3818.465738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.81424 -39.52233 -37.78738 -34.88909 -34.62095 -33.41854 -32.73464 -32.45863 -29.78704 -28.63398 -27.16490 -26.52245 -25.63348 -23.40179 -22.69212 -21.96227 -21.08983 -20.05606 -18.40821 -17.86221 -17.34918 -16.56403 -16.44465 -16.14512 -15.46150 -15.36133 -15.23846 -14.96779 -14.42817 -14.27327 -14.01056 -13.91783 -13.81413 -13.56269 -13.31203 -13.25617 -12.91339 -12.80518 -12.47111 -12.33023 -12.11904 -12.04219 -11.97909 -11.47766 -11.38443 -11.28969 -11.15110 -11.08666 -11.03326 -10.96453 -10.77485 -10.61997 -10.06659 -9.88316 -9.53067 -9.20106 -9.02578 -8.52727 -8.28210 -6.95158 -6.31097 -4.03271 2.26514 2.44102 2.74539 2.86281 3.11896 3.30974 3.47897 3.54170 4.05056 4.30042 4.32724 4.41917 4.49786 4.50008 4.58334 4.64935 4.67229 4.74205 4.82611 4.98097 4.98481 5.05047 5.07913 5.08511 5.19687 5.24984 5.26641 5.29460 5.34232 5.44737 5.46880 5.60569 5.65624 5.68466 5.71649 5.75851 5.77872 5.85464 5.88434 5.92513 5.94532 6.09629 6.18384 6.43316 7.00263 7.41161 7.81635 7.91825 8.35850 8.39316 9.14934 10.78048 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.002620 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.733568 B =10685.502394 C =10981.260111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.144 4.144 4 C 0.518 3.482 5 O -0.538 6.538 6 N -0.606 5.606 7 C 0.098 3.902 8 C 0.129 3.871 9 H 0.115 0.885 10 C -0.124 4.124 11 C -0.144 4.144 12 C -0.123 4.123 13 C 0.122 3.878 14 H 0.114 0.886 15 C 0.102 3.898 16 N -0.612 5.612 17 C 0.538 3.462 18 O -0.518 6.518 19 C -0.122 4.122 20 S -0.141 6.141 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.879 5.879 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.236 1.236 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.105 0.895 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.980 -15.449 0.528 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.184 4.184 4 C 0.308 3.692 5 O -0.415 6.415 6 N -0.340 5.340 7 C -0.026 4.026 8 C 0.024 3.976 9 H 0.133 0.867 10 C -0.162 4.162 11 C -0.182 4.182 12 C -0.161 4.161 13 C 0.018 3.982 14 H 0.131 0.869 15 C -0.021 4.021 16 N -0.348 5.348 17 C 0.326 3.674 18 O -0.393 6.393 19 C -0.272 4.272 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.516 5.516 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.160 1.160 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.124 0.876 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.354 -14.359 0.415 27.419 hybrid contribution 0.886 -0.268 0.109 0.932 sum -22.468 -14.627 0.524 26.815 Atomic orbital electron populations 1.21797 0.95383 1.02043 1.01835 1.21289 0.95342 0.94489 1.03609 1.21841 0.91667 1.00416 1.04469 1.20577 0.90496 0.82990 0.75103 1.90723 1.70355 1.30739 1.49665 1.48068 1.06981 1.05986 1.73010 1.22153 0.96966 0.84186 0.99343 1.21803 0.80989 1.00577 0.94201 0.86683 1.21902 1.00178 0.96830 0.97325 1.22107 0.95587 0.97381 1.03101 1.22141 0.96526 1.00799 0.96627 1.22372 0.98017 0.82859 0.94971 0.86868 1.22053 0.79556 1.02241 0.98258 1.48491 1.05863 1.05892 1.74593 1.20278 0.89531 0.82630 0.74923 1.90689 1.69688 1.30461 1.48438 1.23304 0.93306 1.05085 1.05527 1.84788 1.06607 1.03509 1.96608 1.22298 0.88167 0.97988 1.58413 0.89382 1.24715 0.94123 0.99272 0.93225 1.69943 1.01339 1.32543 1.47760 0.86732 0.81155 0.84171 0.79766 1.19224 1.19940 1.15951 0.92624 0.92653 0.92354 0.91221 0.91195 0.88713 0.88769 0.88610 0.90396 0.91244 0.91123 0.92549 0.89415 0.91206 0.90866 0.90561 0.87636 0.88564 0.88580 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.39 16 2 C -0.11 -0.74 5.22 -26.73 -0.14 -0.88 16 3 C -0.14 -0.90 4.01 -27.88 -0.11 -1.01 16 4 C 0.52 4.93 5.05 -10.99 -0.06 4.88 16 5 O -0.54 -7.00 15.38 5.55 0.09 -6.91 16 6 N -0.61 -5.49 1.63 -172.67 -0.28 -5.78 16 7 C 0.10 0.77 5.80 -3.80 -0.02 0.75 16 8 C 0.13 1.30 3.49 -66.85 -0.23 1.07 16 9 H 0.12 1.30 7.16 -51.93 -0.37 0.93 16 10 C -0.12 -1.08 5.60 -26.53 -0.15 -1.23 16 11 C -0.14 -1.30 5.55 -26.72 -0.15 -1.45 16 12 C -0.12 -1.22 5.69 -25.67 -0.15 -1.36 16 13 C 0.12 1.31 3.48 -65.96 -0.23 1.08 16 14 H 0.11 1.22 6.18 -51.93 -0.32 0.90 16 15 C 0.10 1.03 5.94 -3.47 -0.02 1.00 16 16 N -0.61 -7.73 2.50 -154.89 -0.39 -8.12 16 17 C 0.54 9.23 7.75 -10.98 -0.09 9.15 16 18 O -0.52 -10.65 15.41 5.56 0.09 -10.57 16 19 C -0.12 -2.30 4.54 36.01 0.16 -2.13 16 20 S -0.14 -3.52 18.55 -107.50 -1.99 -5.52 16 21 C -0.52 -14.80 10.04 30.94 0.31 -14.49 16 22 H 0.09 2.61 8.03 -52.48 -0.42 2.18 16 23 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 24 N -0.88 -26.33 13.97 55.49 0.78 -25.55 16 25 Si 0.86 21.59 27.74 -169.99 -4.71 16.88 16 26 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.09 0.45 7.70 -51.93 -0.40 0.05 16 35 H 0.09 0.45 7.92 -51.93 -0.41 0.04 16 36 H 0.10 0.48 5.89 -51.93 -0.31 0.18 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.81 2.63 -51.94 -0.14 0.67 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.11 1.10 6.99 -51.93 -0.36 0.74 16 46 H 0.10 1.69 7.89 -51.92 -0.41 1.28 16 47 H 0.10 1.71 7.87 -51.91 -0.41 1.30 16 48 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -34.37 377.86 -9.10 -43.47 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -7.77 Total: -1.25 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -0.59 Total: -2.35 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.11 Total: -39.44 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.17 Total: -17.48 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.37 -9.10 -43.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536188129.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.413 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds