Wall clock time and date at job start Sat Apr 11 2020 06:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46808 * 2 1 4 4 C 1.50702 * 109.47038 * 179.97438 * 3 2 1 5 5 O 1.21288 * 119.99735 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00297 * 180.02562 * 4 3 2 7 7 C 1.46379 * 120.54837 * 359.68766 * 6 4 3 8 8 C 1.53596 * 108.62506 * 125.75212 * 7 6 4 9 9 H 1.08998 * 110.59841 * 172.23541 * 8 7 6 10 10 C 1.53369 * 109.20096 * 294.16574 * 8 7 6 11 11 C 1.53011 * 109.24704 * 60.51835 * 10 8 7 12 12 C 1.53015 * 109.79245 * 60.59186 * 11 10 8 13 13 C 1.54995 * 109.05167 * 299.03221 * 12 11 10 14 14 H 1.08993 * 110.48663 * 177.58158 * 13 12 11 15 15 C 1.46946 * 120.44308 * 180.02562 * 6 4 3 16 16 N 1.47567 * 107.76417 * 51.21957 * 8 7 6 17 17 C 1.34777 * 121.61248 * 120.50826 * 16 8 7 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 8 19 19 C 1.50703 * 120.00161 * 179.97438 * 17 16 8 20 20 S 1.81002 * 109.47178 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00092 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00019 * 0.02562 * 21 20 19 23 23 C 1.38795 * 119.99810 * 179.97438 * 21 20 19 24 24 N 1.31635 * 119.99575 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00242 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47244 * 90.00194 * 25 23 21 27 27 H 1.48498 * 109.47205 * 209.99923 * 25 23 21 28 28 H 1.48496 * 109.47344 * 330.00405 * 25 23 21 29 29 H 1.09001 * 109.47228 * 300.00602 * 1 2 3 30 30 H 1.09003 * 109.46656 * 60.00028 * 1 2 3 31 31 H 1.09000 * 109.47102 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46973 * 239.99903 * 2 1 3 33 33 H 1.08993 * 109.47027 * 119.99580 * 2 1 3 34 34 H 1.09002 * 109.47470 * 60.00189 * 3 2 1 35 35 H 1.09003 * 109.47049 * 299.99765 * 3 2 1 36 36 H 1.08999 * 109.49327 * 6.06956 * 7 6 4 37 37 H 1.08993 * 109.68020 * 245.55126 * 7 6 4 38 38 H 1.08997 * 109.50815 * 180.45646 * 10 8 7 39 39 H 1.09005 * 109.50382 * 300.54753 * 10 8 7 40 40 H 1.09005 * 109.41350 * 180.68365 * 11 10 8 41 41 H 1.08997 * 109.42441 * 300.49128 * 11 10 8 42 42 H 1.09000 * 109.49965 * 59.36992 * 12 11 10 43 43 H 1.08999 * 109.50209 * 179.44473 * 12 11 10 44 44 H 1.09003 * 109.62480 * 114.52147 * 15 6 4 45 45 H 1.08999 * 109.63168 * 353.94125 * 15 6 4 46 46 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 47 47 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 48 48 H 0.97007 * 119.99682 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1535 0.3922 0.0015 6 7 4.2209 2.6098 0.0013 7 6 3.5012 3.8844 -0.0055 8 6 3.9945 4.7326 1.1762 9 1 3.5815 5.7399 1.1240 10 6 3.5905 4.0512 2.4895 11 6 4.2354 2.6653 2.5579 12 6 5.7591 2.8003 2.5166 13 6 6.1712 3.4758 1.1839 14 1 7.2507 3.6224 1.1484 15 6 5.6903 2.6211 0.0013 16 7 5.4685 4.7718 1.1180 17 6 6.1403 5.9346 1.0043 18 8 5.5329 6.9828 0.9478 19 6 7.6463 5.9324 0.9487 20 16 8.2470 7.6332 0.7974 21 6 9.9841 7.3415 0.7543 22 1 10.3639 6.3324 0.8160 23 6 10.8643 8.4086 0.6399 24 7 12.1620 8.1906 0.6073 25 14 10.2073 10.1538 0.5310 26 1 10.0851 10.7229 1.8972 27 1 11.1413 10.9852 -0.2699 28 1 8.8730 10.1407 -0.1208 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 2.4321 3.6990 0.0981 37 1 3.6954 4.4106 -0.9401 38 1 3.9312 4.6533 3.3318 39 1 2.5058 3.9509 2.5288 40 1 3.9402 2.1737 3.4849 41 1 3.9015 2.0678 1.7097 42 1 6.0937 3.4054 3.3592 43 1 6.2137 1.8114 2.5756 44 1 6.0532 3.0506 -0.9325 45 1 6.0644 1.6030 0.1092 46 1 7.9772 5.3519 0.0875 47 1 8.0430 5.4872 1.8611 48 1 12.7772 8.9364 0.5277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536188129.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:14 Heat of formation + Delta-G solvation = -76.383723 kcal Electronic energy + Delta-G solvation = -28798.586725 eV Core-core repulsion = 24979.231996 eV Total energy + Delta-G solvation = -3819.354729 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.66511 -40.57427 -38.89025 -35.60293 -35.31277 -34.68294 -34.29284 -33.65899 -31.03952 -29.45336 -28.00175 -27.80883 -27.23674 -24.18790 -23.52541 -22.58489 -22.16205 -20.78797 -19.96393 -19.03669 -18.51902 -17.56049 -17.33885 -17.12029 -16.91650 -16.58571 -16.41550 -16.02601 -15.77484 -15.11560 -15.09507 -14.97974 -14.79552 -14.65513 -14.47559 -14.22448 -13.94967 -13.73289 -13.43838 -13.34356 -13.13918 -13.02269 -12.88499 -12.85011 -12.65183 -12.50579 -12.18297 -11.93328 -11.92173 -11.87569 -11.81669 -11.58931 -11.56738 -11.18084 -10.95104 -10.80492 -10.54161 -10.17267 -9.18371 -9.00388 -8.52352 -6.23503 0.94713 1.30755 1.42754 1.45477 1.50787 1.59067 1.79092 2.09151 2.24007 2.65714 2.85803 3.29393 3.53652 3.62103 3.67161 3.82042 3.89874 3.94263 3.98573 4.11684 4.14689 4.18074 4.26965 4.35504 4.40702 4.45630 4.52031 4.58754 4.65045 4.66225 4.72974 4.78120 4.86060 4.93105 4.94708 4.98579 5.06647 5.13572 5.27180 5.30923 5.31641 5.43132 5.48096 5.51199 5.69665 6.10376 6.17888 6.33512 6.92518 7.03962 7.09451 8.59989 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.002620 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.733568 B =10685.502394 C =10981.260111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.517 3.483 5 O -0.578 6.578 6 N -0.605 5.605 7 C 0.102 3.898 8 C 0.122 3.878 9 H 0.107 0.893 10 C -0.117 4.117 11 C -0.142 4.142 12 C -0.122 4.122 13 C 0.119 3.881 14 H 0.109 0.891 15 C 0.105 3.895 16 N -0.599 5.599 17 C 0.542 3.458 18 O -0.557 6.557 19 C -0.109 4.109 20 S -0.170 6.170 21 C -0.529 4.529 22 H 0.061 0.939 23 C 0.044 3.956 24 N -0.916 5.916 25 Si 0.915 3.085 26 H -0.262 1.262 27 H -0.259 1.259 28 H -0.235 1.235 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.136 0.864 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.101 0.899 46 H 0.109 0.891 47 H 0.106 0.894 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.075 -15.686 0.558 30.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.179 4.179 4 C 0.309 3.691 5 O -0.457 6.457 6 N -0.338 5.338 7 C -0.021 4.021 8 C 0.019 3.981 9 H 0.125 0.875 10 C -0.155 4.155 11 C -0.179 4.179 12 C -0.160 4.160 13 C 0.015 3.985 14 H 0.127 0.873 15 C -0.018 4.018 16 N -0.333 5.333 17 C 0.329 3.671 18 O -0.435 6.435 19 C -0.259 4.259 20 S 0.057 5.943 21 C -0.676 4.676 22 H 0.079 0.921 23 C -0.161 4.161 24 N -0.554 5.554 25 Si 0.737 3.263 26 H -0.187 1.187 27 H -0.184 1.184 28 H -0.159 1.159 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.153 0.847 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.123 0.877 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.119 0.881 46 H 0.127 0.873 47 H 0.124 0.876 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -26.472 -14.635 0.448 30.252 hybrid contribution 1.823 -0.398 0.125 1.870 sum -24.649 -15.034 0.573 28.878 Atomic orbital electron populations 1.21765 0.93736 1.02315 1.02799 1.21252 0.96670 0.94677 1.02066 1.21927 0.88763 1.00518 1.06702 1.21208 0.91836 0.82201 0.73874 1.90714 1.71416 1.32143 1.51447 1.48123 1.06446 1.06568 1.72645 1.22250 0.98869 0.82980 0.98016 1.22096 0.78776 1.00995 0.96275 0.87546 1.21888 1.02189 0.95855 0.95610 1.22103 0.94552 0.97686 1.03591 1.22134 0.97696 1.00681 0.95486 1.22514 0.97815 0.82039 0.96103 0.87321 1.21920 0.80702 1.01623 0.97597 1.48465 1.07351 1.05065 1.72413 1.19860 0.88529 0.83448 0.75239 1.90673 1.69971 1.31989 1.50856 1.23276 0.95154 1.00893 1.06613 1.84649 1.04049 1.08832 1.96783 1.22446 0.90432 0.96910 1.57862 0.92096 1.25583 0.94380 1.03187 0.92951 1.70024 1.02523 1.34026 1.48864 0.85853 0.80724 0.79607 0.80095 1.18717 1.18371 1.15926 0.91519 0.91743 0.92565 0.92988 0.92695 0.86169 0.86470 0.84658 0.90629 0.92813 0.87731 0.91799 0.89190 0.92073 0.90381 0.90785 0.88071 0.87323 0.87615 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 71.98 0.71 -0.32 16 2 C -0.11 -1.23 5.22 30.60 0.16 -1.07 16 3 C -0.14 -1.22 4.01 29.85 0.12 -1.10 16 4 C 0.52 8.60 5.05 87.66 0.44 9.04 16 5 O -0.58 -14.43 15.38 -3.06 -0.05 -14.48 16 6 N -0.60 -9.49 1.63 -818.60 -1.33 -10.82 16 7 C 0.10 1.26 5.80 86.60 0.50 1.77 16 8 C 0.12 2.17 3.49 45.11 0.16 2.32 16 9 H 0.11 2.19 7.16 -2.39 -0.02 2.17 16 10 C -0.12 -1.69 5.60 30.72 0.17 -1.52 16 11 C -0.14 -2.19 5.55 30.60 0.17 -2.02 16 12 C -0.12 -2.26 5.69 31.28 0.18 -2.08 16 13 C 0.12 2.44 3.48 45.68 0.16 2.60 16 14 H 0.11 2.31 6.18 -2.39 -0.01 2.29 16 15 C 0.11 2.00 5.94 86.51 0.51 2.51 16 16 N -0.60 -14.39 2.50 -762.34 -1.90 -16.29 16 17 C 0.54 18.30 7.75 87.66 0.68 18.98 16 18 O -0.56 -22.71 15.41 -3.02 -0.05 -22.75 16 19 C -0.11 -4.10 4.54 71.24 0.32 -3.77 16 20 S -0.17 -8.50 18.55 -56.49 -1.05 -9.55 16 21 C -0.53 -30.68 10.04 67.95 0.68 -30.00 16 22 H 0.06 3.74 8.03 -2.91 -0.02 3.71 16 23 C 0.04 2.60 5.50 84.86 0.47 3.07 16 24 N -0.92 -55.75 13.97 21.65 0.30 -55.44 16 25 Si 0.92 44.76 27.74 68.60 1.90 46.67 16 26 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.24 -11.43 6.74 99.48 0.67 -10.76 16 29 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 34 H 0.12 0.49 7.70 -2.39 -0.02 0.48 16 35 H 0.12 0.56 7.92 -2.39 -0.02 0.54 16 36 H 0.14 0.65 5.89 -2.39 -0.01 0.63 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.09 1.40 2.63 -2.40 -0.01 1.39 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.10 2.06 6.99 -2.39 -0.02 2.04 16 46 H 0.11 3.82 7.89 -2.39 -0.02 3.80 16 47 H 0.11 3.78 7.87 -2.39 -0.02 3.76 16 48 H 0.28 15.56 8.31 -92.70 -0.77 14.79 16 Total: -1.00 -76.32 377.86 4.18 -72.14 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.91 Total: 12.13 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 5.44 Total: -1.60 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -2.93 Total: -82.55 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -0.09 Total: -37.23 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.90 Total: 46.67 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.05 Total: -9.55 kcal Total: -76.32 4.18 -72.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536188129.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.248 kcal (2) G-P(sol) polarization free energy of solvation -76.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds