Wall clock time and date at job start Sat Apr 11 2020 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32995 * 119.99992 * 2 1 4 4 C 1.50694 * 120.00522 * 179.97438 * 3 2 1 5 5 C 1.47111 * 119.99770 * 359.97438 * 3 2 1 6 6 O 1.21615 * 119.99497 * 40.39794 * 5 3 2 7 7 N 1.34766 * 120.00290 * 220.39411 * 5 3 2 8 8 C 1.46505 * 119.99943 * 3.78284 * 7 5 3 9 9 C 1.46505 * 120.00388 * 183.78216 * 7 5 3 10 10 C 1.52998 * 109.46910 * 275.70231 * 9 7 5 11 11 H 1.08999 * 110.00030 * 55.14971 * 10 9 7 12 12 C 1.54328 * 109.99361 * 294.11041 * 10 9 7 13 13 C 1.55152 * 103.02510 * 218.67019 * 12 10 9 14 14 C 1.54907 * 101.58175 * 35.30586 * 13 12 10 15 15 N 1.47023 * 109.87947 * 176.24842 * 10 9 7 16 16 C 1.34786 * 125.64672 * 298.39201 * 15 10 9 17 17 O 1.21279 * 119.99774 * 354.63446 * 16 15 10 18 18 C 1.50691 * 119.99946 * 174.63936 * 16 15 10 19 19 S 1.81002 * 109.47093 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00118 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00192 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00112 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99744 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00130 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46998 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46998 * 119.99925 * 24 22 20 27 27 H 1.48502 * 109.47233 * 239.99947 * 24 22 20 28 28 H 1.08999 * 109.47443 * 299.99504 * 1 2 3 29 29 H 1.09000 * 109.47379 * 60.00632 * 1 2 3 30 30 H 1.09004 * 109.46648 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.00578 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47442 * 266.80599 * 4 3 2 33 33 H 1.09006 * 109.47067 * 26.80490 * 4 3 2 34 34 H 1.09004 * 109.47318 * 146.80783 * 4 3 2 35 35 H 1.08997 * 109.47263 * 264.00455 * 8 7 5 36 36 H 1.08995 * 109.47050 * 24.00843 * 8 7 5 37 37 H 1.09008 * 109.47008 * 144.00218 * 8 7 5 38 38 H 1.08998 * 109.47230 * 155.69838 * 9 7 5 39 39 H 1.08996 * 109.46490 * 35.69995 * 9 7 5 40 40 H 1.09001 * 110.85264 * 100.19971 * 12 10 9 41 41 H 1.09009 * 110.51406 * 336.98202 * 12 10 9 42 42 H 1.09006 * 111.00254 * 277.23222 * 13 12 10 43 43 H 1.08999 * 111.01125 * 153.38078 * 13 12 10 44 44 H 1.08999 * 110.36958 * 204.15588 * 14 13 12 45 45 H 1.08998 * 110.36914 * 81.83243 * 14 13 12 46 46 H 1.08996 * 109.47811 * 59.99674 * 18 16 15 47 47 H 1.09002 * 109.46930 * 299.99566 * 18 16 15 48 48 H 0.97003 * 119.99593 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6789 1.1519 0.0006 5 6 1.4363 2.4258 -0.0006 6 8 0.4374 2.5513 0.6816 7 7 1.8694 3.4536 -0.7569 8 6 3.0238 3.2767 -1.6416 9 6 1.1859 4.7480 -0.6947 10 6 -0.0194 4.7340 -1.6369 11 1 -0.6712 3.8943 -1.3961 12 6 0.4565 4.6226 -3.1008 13 6 -0.5215 5.5588 -3.8586 14 6 -0.7431 6.6849 -2.8182 15 7 -0.7639 5.9959 -1.5151 16 6 -1.3616 6.4504 -0.3957 17 8 -1.3942 5.7568 0.5986 18 6 -1.9894 7.8202 -0.3799 19 16 -2.7034 8.1377 1.2528 20 6 -3.3483 9.7571 0.9951 21 1 -3.2312 10.2386 0.0354 22 6 -4.0057 10.4145 2.0257 23 7 -4.1479 9.8279 3.1955 24 14 -4.6887 12.1316 1.7527 25 1 -4.3989 12.5642 0.3620 26 1 -6.1573 12.1209 1.9725 27 1 -4.0523 13.0750 2.7068 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.0470 -0.9352 -0.0004 32 1 4.0419 1.2094 1.0267 33 1 4.0425 0.2346 -0.4625 34 1 4.0424 2.0118 -0.5621 35 1 3.9245 3.6278 -1.1381 36 1 3.1337 2.2209 -1.8887 37 1 2.8718 3.8500 -2.5562 38 1 1.8742 5.5373 -0.9968 39 1 0.8477 4.9315 0.3251 40 1 0.3665 3.5978 -3.4611 41 1 1.4826 4.9776 -3.1970 42 1 -1.4566 5.0463 -4.0849 43 1 -0.0630 5.9505 -4.7666 44 1 -1.6945 7.1856 -2.9979 45 1 0.0768 7.4021 -2.8551 46 1 -2.7734 7.8695 -1.1355 47 1 -1.2291 8.5708 -0.5957 48 1 -4.6077 10.2872 3.9156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571709886.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:27 Heat of formation + Delta-G solvation = -37.120684 kcal Electronic energy + Delta-G solvation = -27954.752261 eV Core-core repulsion = 24137.100105 eV Total energy + Delta-G solvation = -3817.652156 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.60132 -39.55684 -37.23581 -35.72979 -35.35606 -32.39572 -31.81927 -31.21325 -29.94523 -28.52754 -27.49286 -26.01552 -25.45619 -24.51689 -23.05425 -21.80918 -21.06735 -19.05223 -18.47419 -17.64233 -16.90790 -16.56010 -16.11976 -15.81724 -15.44375 -14.90193 -14.78782 -14.76740 -14.33771 -14.07441 -13.98947 -13.67726 -13.59958 -13.28253 -13.15869 -13.01797 -12.89287 -12.75258 -12.51593 -12.35647 -12.18650 -12.09337 -11.88553 -11.66225 -11.44284 -11.35265 -11.05532 -11.04928 -10.97607 -10.79269 -10.72223 -9.77244 -9.69913 -9.26484 -9.17453 -9.04270 -8.99176 -8.31384 -8.17080 -6.45632 -6.18086 -3.88288 1.31764 2.65966 2.98765 3.10201 3.16368 3.23605 3.29909 3.34292 3.69191 4.23065 4.30701 4.38021 4.41761 4.61151 4.63701 4.77451 4.96140 4.99118 5.03835 5.13079 5.14616 5.16788 5.18632 5.19412 5.28892 5.34402 5.44565 5.47446 5.52095 5.60544 5.61482 5.65321 5.67976 5.69218 5.80667 5.87774 5.96322 5.97509 6.07047 6.18286 6.28659 6.31158 6.34120 6.60213 7.26655 7.62926 7.75234 8.14477 8.38745 8.66020 9.26963 10.89337 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.002587 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.957311 B =10818.839737 C =11731.055986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 C -0.188 4.188 4 C -0.133 4.133 5 C 0.548 3.452 6 O -0.512 6.512 7 N -0.611 5.611 8 C 0.070 3.930 9 C 0.108 3.892 10 C 0.128 3.872 11 H 0.078 0.922 12 C -0.125 4.125 13 C -0.133 4.133 14 C 0.101 3.899 15 N -0.623 5.623 16 C 0.544 3.456 17 O -0.500 6.500 18 C -0.146 4.146 19 S -0.060 6.060 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.123 0.877 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.456 -16.510 -17.307 29.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 C -0.191 4.191 4 C -0.189 4.189 5 C 0.337 3.663 6 O -0.387 6.387 7 N -0.346 5.346 8 C -0.072 4.072 9 C -0.016 4.016 10 C 0.023 3.977 11 H 0.096 0.904 12 C -0.163 4.163 13 C -0.171 4.171 14 C -0.022 4.022 15 N -0.361 5.361 16 C 0.332 3.668 17 O -0.373 6.373 18 C -0.296 4.296 19 S 0.167 5.833 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.110 0.890 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.140 0.860 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.744 -17.412 -15.171 28.525 hybrid contribution -0.255 1.950 -1.422 2.427 sum 16.489 -15.462 -16.593 28.041 Atomic orbital electron populations 1.21054 0.92122 1.02085 1.04107 1.23466 0.96916 0.96494 0.93307 1.21423 0.96522 0.93130 1.08064 1.21301 0.90740 1.03722 1.03139 1.18581 0.84365 0.83758 0.79597 1.90903 1.24827 1.82049 1.40895 1.47696 1.31768 1.11858 1.43236 1.22204 0.88108 1.02983 0.93948 1.21826 0.93375 0.83574 1.02790 1.21804 0.93108 0.88181 0.94636 0.90363 1.22753 0.99346 1.00468 0.93761 1.22780 1.00091 0.96522 0.97663 1.22281 1.02326 0.95157 0.82469 1.48561 1.55184 1.21681 1.10695 1.20082 0.77349 0.88057 0.81341 1.90774 1.56541 1.57519 1.32453 1.23512 1.02989 0.95186 1.07942 1.85471 1.70977 1.20746 1.06117 1.22899 1.42418 1.01621 1.01277 0.90939 1.24999 0.95485 0.98710 0.94461 1.70039 1.40171 1.37579 1.02434 0.86120 0.78631 0.82414 0.78332 1.19645 1.20578 1.20590 0.88992 0.91563 0.92197 0.85955 0.91387 0.91392 0.89723 0.92259 0.89878 0.91200 0.90428 0.88470 0.90440 0.90649 0.90568 0.89892 0.90284 0.91468 0.89462 0.89375 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.75 36.00 0.32 -1.13 16 2 C -0.08 -0.75 9.93 -36.13 -0.36 -1.11 16 3 C -0.19 -1.87 5.06 -102.84 -0.52 -2.39 16 4 C -0.13 -0.87 9.22 36.00 0.33 -0.54 16 5 C 0.55 7.38 6.83 -12.67 -0.09 7.30 16 6 O -0.51 -9.43 14.30 5.26 0.08 -9.36 16 7 N -0.61 -6.75 2.73 -182.97 -0.50 -7.25 16 8 C 0.07 0.44 8.45 59.85 0.51 0.95 16 9 C 0.11 1.44 4.77 -4.04 -0.02 1.42 16 10 C 0.13 1.69 3.05 -66.95 -0.20 1.49 16 11 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 12 C -0.13 -1.06 5.63 -24.90 -0.14 -1.20 16 13 C -0.13 -1.07 7.09 -24.59 -0.17 -1.24 16 14 C 0.10 1.09 6.65 -2.53 -0.02 1.08 16 15 N -0.62 -9.44 3.06 -163.02 -0.50 -9.94 16 16 C 0.54 11.03 7.59 -10.99 -0.08 10.95 16 17 O -0.50 -12.36 15.06 5.56 0.08 -12.27 16 18 C -0.15 -3.09 5.25 36.00 0.19 -2.91 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 20 C -0.53 -15.50 9.50 30.94 0.29 -15.20 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.67 13.22 55.49 0.73 -25.93 16 24 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H 0.09 1.25 6.77 -51.93 -0.35 0.89 16 29 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.12 0.77 8.04 -52.49 -0.42 0.35 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.32 8.03 -51.93 -0.42 -0.10 16 34 H 0.08 0.46 3.83 -51.93 -0.20 0.26 16 35 H 0.06 0.31 7.26 -51.93 -0.38 -0.07 16 36 H 0.08 0.42 5.53 -51.93 -0.29 0.13 16 37 H 0.07 0.34 6.00 -51.92 -0.31 0.02 16 38 H 0.08 0.87 7.94 -51.93 -0.41 0.46 16 39 H 0.10 1.78 6.44 -51.93 -0.33 1.44 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.51 6.21 -51.92 -0.32 0.19 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.86 7.51 -51.93 -0.39 0.47 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 1.72 7.77 -51.92 -0.40 1.32 16 47 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 48 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 393.71 15.07 5.93 5.93 Total: -1.00 -38.02 393.71 -9.05 -47.06 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.57 Total: -0.53 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -0.06 Total: -0.53 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.27 Total: -43.12 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: 0.16 Total: -21.63 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.02 -9.05 -47.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571709886.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.940 kcal (2) G-P(sol) polarization free energy of solvation -38.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds