Wall clock time and date at job start Sat Apr 11 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32995 * 119.99992 * 2 1 4 4 C 1.50694 * 120.00522 * 179.97438 * 3 2 1 5 5 C 1.47111 * 119.99770 * 359.97438 * 3 2 1 6 6 O 1.21615 * 119.99497 * 40.39794 * 5 3 2 7 7 N 1.34766 * 120.00290 * 220.39411 * 5 3 2 8 8 C 1.46505 * 119.99943 * 3.78284 * 7 5 3 9 9 C 1.46505 * 120.00388 * 183.78216 * 7 5 3 10 10 C 1.52998 * 109.46910 * 275.70231 * 9 7 5 11 11 H 1.08999 * 110.00030 * 55.14971 * 10 9 7 12 12 C 1.54328 * 109.99361 * 294.11041 * 10 9 7 13 13 C 1.55152 * 103.02510 * 218.67019 * 12 10 9 14 14 C 1.54907 * 101.58175 * 35.30586 * 13 12 10 15 15 N 1.47023 * 109.87947 * 176.24842 * 10 9 7 16 16 C 1.34786 * 125.64672 * 298.39201 * 15 10 9 17 17 O 1.21279 * 119.99774 * 354.63446 * 16 15 10 18 18 C 1.50691 * 119.99946 * 174.63936 * 16 15 10 19 19 S 1.81002 * 109.47093 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00118 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00192 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00112 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99744 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00130 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46998 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46998 * 119.99925 * 24 22 20 27 27 H 1.48502 * 109.47233 * 239.99947 * 24 22 20 28 28 H 1.08999 * 109.47443 * 299.99504 * 1 2 3 29 29 H 1.09000 * 109.47379 * 60.00632 * 1 2 3 30 30 H 1.09004 * 109.46648 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.00578 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47442 * 266.80599 * 4 3 2 33 33 H 1.09006 * 109.47067 * 26.80490 * 4 3 2 34 34 H 1.09004 * 109.47318 * 146.80783 * 4 3 2 35 35 H 1.08997 * 109.47263 * 264.00455 * 8 7 5 36 36 H 1.08995 * 109.47050 * 24.00843 * 8 7 5 37 37 H 1.09008 * 109.47008 * 144.00218 * 8 7 5 38 38 H 1.08998 * 109.47230 * 155.69838 * 9 7 5 39 39 H 1.08996 * 109.46490 * 35.69995 * 9 7 5 40 40 H 1.09001 * 110.85264 * 100.19971 * 12 10 9 41 41 H 1.09009 * 110.51406 * 336.98202 * 12 10 9 42 42 H 1.09006 * 111.00254 * 277.23222 * 13 12 10 43 43 H 1.08999 * 111.01125 * 153.38078 * 13 12 10 44 44 H 1.08999 * 110.36958 * 204.15588 * 14 13 12 45 45 H 1.08998 * 110.36914 * 81.83243 * 14 13 12 46 46 H 1.08996 * 109.47811 * 59.99674 * 18 16 15 47 47 H 1.09002 * 109.46930 * 299.99566 * 18 16 15 48 48 H 0.97003 * 119.99593 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6789 1.1519 0.0006 5 6 1.4363 2.4258 -0.0006 6 8 0.4374 2.5513 0.6816 7 7 1.8694 3.4536 -0.7569 8 6 3.0238 3.2767 -1.6416 9 6 1.1859 4.7480 -0.6947 10 6 -0.0194 4.7340 -1.6369 11 1 -0.6712 3.8943 -1.3961 12 6 0.4565 4.6226 -3.1008 13 6 -0.5215 5.5588 -3.8586 14 6 -0.7431 6.6849 -2.8182 15 7 -0.7639 5.9959 -1.5151 16 6 -1.3616 6.4504 -0.3957 17 8 -1.3942 5.7568 0.5986 18 6 -1.9894 7.8202 -0.3799 19 16 -2.7034 8.1377 1.2528 20 6 -3.3483 9.7571 0.9951 21 1 -3.2312 10.2386 0.0354 22 6 -4.0057 10.4145 2.0257 23 7 -4.1479 9.8279 3.1955 24 14 -4.6887 12.1316 1.7527 25 1 -4.3989 12.5642 0.3620 26 1 -6.1573 12.1209 1.9725 27 1 -4.0523 13.0750 2.7068 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.0470 -0.9352 -0.0004 32 1 4.0419 1.2094 1.0267 33 1 4.0425 0.2346 -0.4625 34 1 4.0424 2.0118 -0.5621 35 1 3.9245 3.6278 -1.1381 36 1 3.1337 2.2209 -1.8887 37 1 2.8718 3.8500 -2.5562 38 1 1.8742 5.5373 -0.9968 39 1 0.8477 4.9315 0.3251 40 1 0.3665 3.5978 -3.4611 41 1 1.4826 4.9776 -3.1970 42 1 -1.4566 5.0463 -4.0849 43 1 -0.0630 5.9505 -4.7666 44 1 -1.6945 7.1856 -2.9979 45 1 0.0768 7.4021 -2.8551 46 1 -2.7734 7.8695 -1.1355 47 1 -1.2291 8.5708 -0.5957 48 1 -4.6077 10.2872 3.9156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571709886.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:26 Heat of formation + Delta-G solvation = -63.565849 kcal Electronic energy + Delta-G solvation = -27955.899010 eV Core-core repulsion = 24137.100105 eV Total energy + Delta-G solvation = -3818.798904 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.66734 -40.76953 -38.59380 -36.72688 -36.17462 -34.61200 -33.09181 -32.08304 -30.85886 -29.96387 -28.19544 -27.69634 -26.92374 -25.23749 -24.19630 -22.66020 -22.00615 -20.47420 -19.59660 -19.34297 -18.20926 -17.75907 -17.12500 -16.91306 -16.77028 -16.57231 -16.24253 -15.94713 -15.64426 -15.24947 -14.85387 -14.75811 -14.63467 -14.42120 -14.15362 -14.11032 -13.90865 -13.79371 -13.62621 -13.42039 -13.35127 -13.17504 -12.97329 -12.92906 -12.83417 -12.61613 -12.58159 -12.17315 -11.97274 -11.95023 -11.73088 -11.57723 -11.18107 -10.95332 -10.69396 -10.29564 -10.05862 -9.92008 -9.47792 -8.71987 -8.36650 -6.16487 0.51067 1.20120 1.40308 1.41578 1.52505 1.55505 1.82225 2.05148 2.24326 2.27809 2.97305 3.21994 3.46058 3.57724 3.60377 3.81291 3.91813 3.94925 4.06413 4.16092 4.24735 4.25343 4.30645 4.36992 4.40130 4.54084 4.59030 4.65427 4.67218 4.72199 4.78845 4.80532 4.83073 4.86035 4.93700 4.98847 5.03187 5.09915 5.23767 5.27128 5.37931 5.39063 5.46434 5.52733 5.64398 6.17684 6.36890 6.40816 7.03770 7.11832 7.17773 8.73145 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.002587 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.957311 B =10818.839737 C =11731.055986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.077 4.077 3 C -0.196 4.196 4 C -0.127 4.127 5 C 0.534 3.466 6 O -0.581 6.581 7 N -0.604 5.604 8 C 0.060 3.940 9 C 0.114 3.886 10 C 0.126 3.874 11 H 0.033 0.967 12 C -0.110 4.110 13 C -0.120 4.120 14 C 0.086 3.914 15 N -0.614 5.614 16 C 0.539 3.461 17 O -0.560 6.560 18 C -0.115 4.115 19 S -0.159 6.159 20 C -0.542 4.542 21 H 0.084 0.916 22 C 0.010 3.990 23 N -0.913 5.913 24 Si 1.004 2.996 25 H -0.254 1.254 26 H -0.274 1.274 27 H -0.273 1.273 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.035 0.965 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.124 0.876 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.109 0.891 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.246 -16.058 -21.821 33.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.096 4.096 3 C -0.199 4.199 4 C -0.183 4.183 5 C 0.325 3.675 6 O -0.461 6.461 7 N -0.337 5.337 8 C -0.080 4.080 9 C -0.010 4.010 10 C 0.021 3.979 11 H 0.052 0.948 12 C -0.148 4.148 13 C -0.158 4.158 14 C -0.035 4.035 15 N -0.350 5.350 16 C 0.327 3.673 17 O -0.438 6.438 18 C -0.266 4.266 19 S 0.068 5.932 20 C -0.690 4.690 21 H 0.103 0.897 22 C -0.194 4.194 23 N -0.550 5.550 24 Si 0.825 3.175 25 H -0.177 1.177 26 H -0.199 1.199 27 H -0.198 1.198 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.180 0.820 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.053 0.947 40 H 0.109 0.891 41 H 0.125 0.875 42 H 0.088 0.912 43 H 0.142 0.858 44 H 0.098 0.902 45 H 0.111 0.889 46 H 0.123 0.877 47 H 0.128 0.872 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.605 -16.963 -19.792 32.616 hybrid contribution -1.079 1.723 -0.097 2.035 sum 18.526 -15.240 -19.889 31.162 Atomic orbital electron populations 1.20988 0.94044 1.02725 1.01584 1.23746 0.95751 0.97910 0.92211 1.21593 0.98348 0.91249 1.08731 1.21356 0.87683 1.05936 1.03349 1.19409 0.83807 0.85430 0.78855 1.90886 1.27994 1.83381 1.43837 1.47795 1.32445 1.10250 1.43207 1.22599 0.86494 1.04935 0.94014 1.21589 0.94267 0.85699 0.99469 1.21942 0.92007 0.85640 0.98315 0.94822 1.22766 1.00953 1.01812 0.89278 1.22804 1.00065 0.94975 0.97956 1.22747 1.03515 0.96582 0.80635 1.48533 1.53253 1.22441 1.10768 1.19939 0.77712 0.87506 0.82137 1.90761 1.59087 1.58838 1.35118 1.23283 1.03567 0.96502 1.03245 1.85751 1.72387 1.22187 1.12849 1.23209 1.42575 1.01256 1.01980 0.89745 1.26215 0.95532 1.03814 0.93869 1.70219 1.41194 1.39887 1.03685 0.84840 0.77730 0.75822 0.79117 1.17750 1.19919 1.19826 0.93024 0.92937 0.89733 0.81991 0.92019 0.88442 0.88353 0.90497 0.88023 0.88704 0.87596 0.94655 0.89062 0.87487 0.91187 0.85822 0.90238 0.88896 0.87669 0.87241 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.75 71.23 0.62 -2.46 16 2 C -0.08 -1.33 9.93 24.52 0.24 -1.08 16 3 C -0.20 -3.75 5.06 -18.70 -0.09 -3.84 16 4 C -0.13 -1.31 9.22 71.23 0.66 -0.66 16 5 C 0.53 15.27 6.83 86.57 0.59 15.86 16 6 O -0.58 -24.17 14.30 -4.08 -0.06 -24.23 16 7 N -0.60 -13.26 2.73 -851.06 -2.33 -15.58 16 8 C 0.06 0.54 8.45 127.77 1.08 1.62 16 9 C 0.11 3.16 4.77 86.38 0.41 3.57 16 10 C 0.13 3.39 3.05 45.34 0.14 3.52 16 11 H 0.03 1.21 8.10 -2.39 -0.02 1.19 16 12 C -0.11 -1.49 5.63 31.78 0.18 -1.31 16 13 C -0.12 -1.45 7.09 31.98 0.23 -1.22 16 14 C 0.09 1.63 6.65 86.85 0.58 2.21 16 15 N -0.61 -18.78 3.06 -788.06 -2.41 -21.19 16 16 C 0.54 23.13 7.59 87.65 0.67 23.79 16 17 O -0.56 -30.48 15.06 -3.03 -0.05 -30.53 16 18 C -0.11 -5.00 5.25 71.23 0.37 -4.62 16 19 S -0.16 -9.43 20.57 -56.49 -1.16 -10.59 16 20 C -0.54 -32.08 9.50 67.95 0.65 -31.43 16 21 H 0.08 4.61 7.80 -2.91 -0.02 4.59 16 22 C 0.01 0.59 5.49 84.86 0.47 1.06 16 23 N -0.91 -58.15 13.22 21.65 0.29 -57.87 16 24 Si 1.00 44.70 29.55 68.60 2.03 46.73 16 25 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 28 H 0.05 1.60 6.77 -2.39 -0.02 1.58 16 29 H 0.05 1.29 8.09 -2.39 -0.02 1.27 16 30 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.16 1.49 8.04 -2.91 -0.02 1.46 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.47 8.03 -2.38 -0.02 0.45 16 34 H 0.10 0.71 3.83 -2.39 -0.01 0.70 16 35 H 0.08 0.49 7.26 -2.39 -0.02 0.48 16 36 H 0.10 0.61 5.53 -2.39 -0.01 0.59 16 37 H 0.09 0.42 6.00 -2.38 -0.01 0.40 16 38 H 0.11 2.23 7.94 -2.39 -0.02 2.22 16 39 H 0.03 1.43 6.44 -2.39 -0.02 1.42 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.11 0.83 6.21 -2.38 -0.01 0.82 16 42 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.12 0.63 8.14 -2.39 -0.02 0.62 16 44 H 0.08 1.53 7.51 -2.39 -0.02 1.51 16 45 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.11 4.16 7.77 -2.40 -0.02 4.14 16 47 H 0.11 4.25 8.14 -2.39 -0.02 4.23 16 48 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -95.94 393.71 4.05 -91.89 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.95 Total: 16.37 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 6.78 Total: 5.00 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -4.45 Total: -94.64 kcal Atomic # 8 Polarization: -54.65 SS G_CDS: -0.10 Total: -54.76 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -9.43 SS G_CDS: -1.16 Total: -10.59 kcal Total: -95.94 4.05 -91.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571709886.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.327 kcal (2) G-P(sol) polarization free energy of solvation -95.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds