Wall clock time and date at job start Sat Apr 11 2020 06:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32994 * 119.99857 * 2 1 4 4 C 1.50702 * 119.99857 * 179.97438 * 3 2 1 5 5 C 1.47106 * 120.00062 * 359.97438 * 3 2 1 6 6 O 1.21619 * 119.99745 * 261.95871 * 5 3 2 7 7 N 1.34769 * 120.00224 * 81.96357 * 5 3 2 8 8 C 1.48390 * 127.17358 * 175.03626 * 7 5 3 9 9 C 1.54940 * 103.37384 * 219.23110 * 8 7 5 10 10 H 1.09002 * 110.73762 * 204.38526 * 9 8 7 11 11 N 1.46497 * 110.89595 * 81.13412 * 9 8 7 12 12 C 1.34777 * 120.00108 * 91.48641 * 11 9 8 13 13 O 1.21283 * 119.99599 * 0.02562 * 12 11 9 14 14 C 1.50699 * 120.00057 * 179.97438 * 12 11 9 15 15 S 1.81002 * 109.47006 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00156 * 180.02562 * 15 14 12 17 17 H 1.08010 * 119.99575 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00437 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00255 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99727 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47187 * 89.99586 * 20 18 16 22 22 H 1.48500 * 109.47005 * 209.99815 * 20 18 16 23 23 H 1.48502 * 109.47248 * 329.99812 * 20 18 16 24 24 C 1.54614 * 102.83942 * 322.72419 * 9 8 7 25 25 C 1.53002 * 110.32937 * 262.96002 * 24 9 8 26 26 C 1.53004 * 110.32758 * 140.74020 * 24 9 8 27 27 C 1.47487 * 127.03213 * 355.23524 * 7 5 3 28 28 H 1.09000 * 109.47246 * 300.00430 * 1 2 3 29 29 H 1.09004 * 109.47244 * 60.00198 * 1 2 3 30 30 H 1.08996 * 109.46903 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.00536 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.46905 * 275.03162 * 4 3 2 33 33 H 1.09000 * 109.47437 * 35.03632 * 4 3 2 34 34 H 1.09003 * 109.47187 * 155.03605 * 4 3 2 35 35 H 1.09003 * 110.51625 * 100.79190 * 8 7 5 36 36 H 1.08991 * 110.69027 * 337.75561 * 8 7 5 37 37 H 0.97006 * 120.00227 * 271.49385 * 11 9 8 38 38 H 1.08998 * 109.47489 * 300.00191 * 14 12 11 39 39 H 1.09006 * 109.46839 * 60.00709 * 14 12 11 40 40 H 0.97001 * 120.00000 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.47279 * 177.07719 * 25 24 9 42 42 H 1.09003 * 109.46441 * 297.07101 * 25 24 9 43 43 H 1.08996 * 109.47129 * 57.07179 * 25 24 9 44 44 H 1.08996 * 109.47461 * 302.92429 * 26 24 9 45 45 H 1.08999 * 109.47055 * 62.92987 * 26 24 9 46 46 H 1.09002 * 109.47035 * 182.92540 * 26 24 9 47 47 H 1.08997 * 109.91360 * 35.16329 * 27 7 5 48 48 H 1.09001 * 109.91518 * 274.07279 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 0.0006 5 6 1.4364 2.4257 -0.0006 6 8 1.2604 3.0258 -1.0437 7 7 0.9577 2.9280 1.1548 8 6 0.2884 4.2373 1.3541 9 6 0.8507 4.7239 2.7134 10 1 0.1636 5.4256 3.1864 11 7 2.1736 5.3303 2.5447 12 6 2.2848 6.6562 2.3302 13 8 1.2897 7.3474 2.2774 14 6 3.6457 7.2800 2.1572 15 16 3.4634 9.0606 1.8883 16 6 5.1563 9.5199 1.7219 17 1 5.9293 8.7691 1.7961 18 6 5.4966 10.8461 1.4945 19 7 6.7612 11.1892 1.3708 20 14 4.1596 12.1444 1.3655 21 1 3.8827 12.7053 2.7123 22 1 4.6109 13.2313 0.4598 23 1 2.9225 11.5286 0.8218 24 6 0.9482 3.4164 3.5328 25 6 -0.2819 3.2576 4.4287 26 6 2.2252 3.4113 4.3757 27 6 0.9951 2.2898 2.4839 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 2.0471 -0.9352 0.0004 32 1 4.0419 1.0619 1.0244 33 1 4.0426 0.3102 -0.5890 34 1 4.0425 2.0834 -0.4332 35 1 -0.7927 4.1093 1.4088 36 1 0.5548 4.9313 0.5571 37 1 2.9696 4.7774 2.5872 38 1 4.2411 7.1074 3.0537 39 1 4.1443 6.8316 1.2979 40 1 6.9990 12.1162 1.2122 41 1 -0.2239 2.3079 4.9605 42 1 -0.3152 4.0755 5.1484 43 1 -1.1828 3.2762 3.8154 44 1 3.0904 3.5382 3.7251 45 1 2.1887 4.2290 5.0955 46 1 2.3060 2.4630 4.9070 47 1 1.9159 1.7173 2.5950 48 1 0.1332 1.6336 2.6051 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571974298.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:49 Heat of formation + Delta-G solvation = -57.863318 kcal Electronic energy + Delta-G solvation = -28149.650171 eV Core-core repulsion = 24331.098547 eV Total energy + Delta-G solvation = -3818.551624 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.01332 -39.37684 -38.12601 -35.61622 -34.15897 -33.43862 -32.43210 -30.61759 -30.24971 -28.66094 -27.39313 -26.75667 -25.61513 -25.15727 -23.75760 -21.76115 -20.39636 -19.66244 -18.74923 -17.80510 -16.81375 -16.66730 -16.37665 -16.11396 -15.38418 -15.15156 -14.96519 -14.78737 -14.42076 -14.08045 -14.02253 -13.84186 -13.74020 -13.37357 -13.21884 -13.10984 -12.88563 -12.79656 -12.70355 -12.60209 -12.29280 -12.25047 -12.10348 -12.00733 -11.89167 -11.37550 -11.28767 -11.25589 -11.05798 -11.00127 -10.58685 -10.07209 -9.85225 -9.56314 -9.30441 -9.29300 -8.99632 -8.76191 -8.49790 -6.90939 -6.28203 -3.99820 1.40612 2.37061 2.73439 2.74905 2.92356 3.27960 3.33913 3.51628 3.63604 3.90684 4.08632 4.33798 4.34491 4.40123 4.52545 4.69815 4.74250 4.78688 4.84820 5.04325 5.05905 5.09919 5.10969 5.18848 5.21729 5.25963 5.27985 5.32084 5.34741 5.41610 5.46597 5.49835 5.53692 5.61026 5.66781 5.74309 5.77528 5.79506 5.84465 5.94714 6.00861 6.07104 6.21311 6.51245 7.25012 7.55510 7.90950 7.94865 8.42182 8.45134 9.18016 10.81088 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015447 B = 0.002798 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.162797 B =10006.474840 C =10747.757161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 C -0.162 4.162 4 C -0.105 4.105 5 C 0.577 3.423 6 O -0.530 6.530 7 N -0.615 5.615 8 C 0.092 3.908 9 C 0.143 3.857 10 H 0.112 0.888 11 N -0.725 5.725 12 C 0.533 3.467 13 O -0.517 6.517 14 C -0.124 4.124 15 S -0.140 6.140 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.085 4.085 25 C -0.137 4.137 26 C -0.138 4.138 27 C 0.109 3.891 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.399 0.601 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.271 0.729 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.078 0.922 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.135 -27.192 5.812 30.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 C -0.165 4.165 4 C -0.162 4.162 5 C 0.366 3.634 6 O -0.406 6.406 7 N -0.350 5.350 8 C -0.032 4.032 9 C 0.036 3.964 10 H 0.130 0.870 11 N -0.380 5.380 12 C 0.319 3.681 13 O -0.392 6.392 14 C -0.275 4.275 15 S 0.087 5.913 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.087 4.087 25 C -0.194 4.194 26 C -0.196 4.196 27 C -0.015 4.015 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.236 0.764 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.705 -25.596 5.016 29.464 hybrid contribution 1.316 -0.442 -0.021 1.388 sum -12.389 -26.038 4.995 29.265 Atomic orbital electron populations 1.20994 0.92769 1.02865 1.02671 1.23298 0.96281 0.96796 0.97354 1.21471 0.97053 0.92626 1.05334 1.20676 0.89477 1.03614 1.02465 1.18140 0.78019 0.85055 0.82174 1.90865 1.58335 1.60781 1.30651 1.48843 1.58766 1.19949 1.07428 1.23037 0.96824 0.84730 0.98570 1.21995 0.86305 0.93804 0.94323 0.86975 1.46047 1.08344 1.08297 1.75355 1.20310 0.91316 0.81370 0.75095 1.90699 1.38749 1.61332 1.48392 1.23272 0.96346 1.02335 1.05520 1.84779 1.13154 0.98833 1.94579 1.22314 0.89731 0.97781 1.57031 0.89422 1.24710 0.95533 0.97822 0.93255 1.69935 1.16095 1.18722 1.46964 0.86735 0.83566 0.82077 0.79474 1.19219 1.19942 1.15893 1.21771 0.97838 0.93892 0.95158 1.21851 0.95858 1.02594 0.99135 1.21841 0.95495 1.02678 0.99550 1.22296 1.02539 0.95143 0.81496 0.91272 0.91116 0.91349 0.85712 0.90899 0.90867 0.91194 0.90086 0.89000 0.76397 0.88533 0.88566 0.91944 0.91783 0.91550 0.92005 0.92304 0.91355 0.91893 0.90335 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.16 36.01 0.33 -0.60 16 2 C -0.12 -0.84 9.97 -36.13 -0.36 -1.20 16 3 C -0.16 -1.49 4.71 -102.84 -0.48 -1.98 16 4 C -0.11 -0.81 10.02 36.01 0.36 -0.45 16 5 C 0.58 7.18 6.10 -12.67 -0.08 7.10 16 6 O -0.53 -9.18 17.37 5.26 0.09 -9.09 16 7 N -0.62 -6.19 3.30 -170.93 -0.56 -6.75 16 8 C 0.09 1.03 6.77 -1.98 -0.01 1.02 16 9 C 0.14 1.46 2.85 -66.06 -0.19 1.28 16 10 H 0.11 1.28 7.26 -51.93 -0.38 0.90 16 11 N -0.73 -8.93 4.56 -52.00 -0.24 -9.17 16 12 C 0.53 9.27 7.85 -10.99 -0.09 9.18 16 13 O -0.52 -10.83 15.51 5.56 0.09 -10.74 16 14 C -0.12 -2.41 6.16 36.00 0.22 -2.19 16 15 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 16 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 17 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 18 C 0.10 2.81 5.50 -17.44 -0.10 2.72 16 19 N -0.88 -26.77 13.97 55.49 0.78 -26.00 16 20 Si 0.86 21.98 27.74 -169.99 -4.72 17.27 16 21 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.23 -6.04 6.74 56.52 0.38 -5.66 16 24 C -0.09 -0.57 0.94 -153.13 -0.14 -0.71 16 25 C -0.14 -0.72 8.22 37.16 0.31 -0.42 16 26 C -0.14 -0.85 7.67 37.16 0.29 -0.57 16 27 C 0.11 0.71 5.76 -2.98 -0.02 0.70 16 28 H 0.07 0.45 6.73 -51.93 -0.35 0.10 16 29 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 34 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.38 7.91 -51.93 -0.41 0.97 16 37 H 0.40 4.12 6.44 -40.82 -0.26 3.86 16 38 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 39 H 0.10 1.80 8.14 -51.91 -0.42 1.38 16 40 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.38 6.12 -51.93 -0.32 0.06 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.08 0.45 7.18 -51.93 -0.37 0.08 16 48 H 0.07 0.38 6.71 -51.93 -0.35 0.03 16 LS Contribution 402.08 15.07 6.06 6.06 Total: -1.00 -36.43 402.08 -8.08 -44.51 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.93 Total: 0.39 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 0.35 Total: -0.92 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: -0.03 Total: -41.92 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: 0.18 Total: -19.84 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.72 Total: 17.27 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.43 -8.08 -44.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571974298.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.354 kcal (2) G-P(sol) polarization free energy of solvation -36.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds