Wall clock time and date at job start Sat Apr 11 2020 06:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32994 * 119.99857 * 2 1 4 4 C 1.50702 * 119.99857 * 179.97438 * 3 2 1 5 5 C 1.47106 * 120.00062 * 359.97438 * 3 2 1 6 6 O 1.21619 * 119.99745 * 261.95871 * 5 3 2 7 7 N 1.34769 * 120.00224 * 81.96357 * 5 3 2 8 8 C 1.48390 * 127.17358 * 175.03626 * 7 5 3 9 9 C 1.54940 * 103.37384 * 219.23110 * 8 7 5 10 10 H 1.09002 * 110.73762 * 204.38526 * 9 8 7 11 11 N 1.46497 * 110.89595 * 81.13412 * 9 8 7 12 12 C 1.34777 * 120.00108 * 91.48641 * 11 9 8 13 13 O 1.21283 * 119.99599 * 0.02562 * 12 11 9 14 14 C 1.50699 * 120.00057 * 179.97438 * 12 11 9 15 15 S 1.81002 * 109.47006 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00156 * 180.02562 * 15 14 12 17 17 H 1.08010 * 119.99575 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00437 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00255 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99727 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47187 * 89.99586 * 20 18 16 22 22 H 1.48500 * 109.47005 * 209.99815 * 20 18 16 23 23 H 1.48502 * 109.47248 * 329.99812 * 20 18 16 24 24 C 1.54614 * 102.83942 * 322.72419 * 9 8 7 25 25 C 1.53002 * 110.32937 * 262.96002 * 24 9 8 26 26 C 1.53004 * 110.32758 * 140.74020 * 24 9 8 27 27 C 1.47487 * 127.03213 * 355.23524 * 7 5 3 28 28 H 1.09000 * 109.47246 * 300.00430 * 1 2 3 29 29 H 1.09004 * 109.47244 * 60.00198 * 1 2 3 30 30 H 1.08996 * 109.46903 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.00536 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.46905 * 275.03162 * 4 3 2 33 33 H 1.09000 * 109.47437 * 35.03632 * 4 3 2 34 34 H 1.09003 * 109.47187 * 155.03605 * 4 3 2 35 35 H 1.09003 * 110.51625 * 100.79190 * 8 7 5 36 36 H 1.08991 * 110.69027 * 337.75561 * 8 7 5 37 37 H 0.97006 * 120.00227 * 271.49385 * 11 9 8 38 38 H 1.08998 * 109.47489 * 300.00191 * 14 12 11 39 39 H 1.09006 * 109.46839 * 60.00709 * 14 12 11 40 40 H 0.97001 * 120.00000 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.47279 * 177.07719 * 25 24 9 42 42 H 1.09003 * 109.46441 * 297.07101 * 25 24 9 43 43 H 1.08996 * 109.47129 * 57.07179 * 25 24 9 44 44 H 1.08996 * 109.47461 * 302.92429 * 26 24 9 45 45 H 1.08999 * 109.47055 * 62.92987 * 26 24 9 46 46 H 1.09002 * 109.47035 * 182.92540 * 26 24 9 47 47 H 1.08997 * 109.91360 * 35.16329 * 27 7 5 48 48 H 1.09001 * 109.91518 * 274.07279 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 0.0006 5 6 1.4364 2.4257 -0.0006 6 8 1.2604 3.0258 -1.0437 7 7 0.9577 2.9280 1.1548 8 6 0.2884 4.2373 1.3541 9 6 0.8507 4.7239 2.7134 10 1 0.1636 5.4256 3.1864 11 7 2.1736 5.3303 2.5447 12 6 2.2848 6.6562 2.3302 13 8 1.2897 7.3474 2.2774 14 6 3.6457 7.2800 2.1572 15 16 3.4634 9.0606 1.8883 16 6 5.1563 9.5199 1.7219 17 1 5.9293 8.7691 1.7961 18 6 5.4966 10.8461 1.4945 19 7 6.7612 11.1892 1.3708 20 14 4.1596 12.1444 1.3655 21 1 3.8827 12.7053 2.7123 22 1 4.6109 13.2313 0.4598 23 1 2.9225 11.5286 0.8218 24 6 0.9482 3.4164 3.5328 25 6 -0.2819 3.2576 4.4287 26 6 2.2252 3.4113 4.3757 27 6 0.9951 2.2898 2.4839 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 2.0471 -0.9352 0.0004 32 1 4.0419 1.0619 1.0244 33 1 4.0426 0.3102 -0.5890 34 1 4.0425 2.0834 -0.4332 35 1 -0.7927 4.1093 1.4088 36 1 0.5548 4.9313 0.5571 37 1 2.9696 4.7774 2.5872 38 1 4.2411 7.1074 3.0537 39 1 4.1443 6.8316 1.2979 40 1 6.9990 12.1162 1.2122 41 1 -0.2239 2.3079 4.9605 42 1 -0.3152 4.0755 5.1484 43 1 -1.1828 3.2762 3.8154 44 1 3.0904 3.5382 3.7251 45 1 2.1887 4.2290 5.0955 46 1 2.3060 2.4630 4.9070 47 1 1.9159 1.7173 2.5950 48 1 0.1332 1.6336 2.6051 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571974298.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:48 Heat of formation + Delta-G solvation = -82.933242 kcal Electronic energy + Delta-G solvation = -28150.737284 eV Core-core repulsion = 24331.098547 eV Total energy + Delta-G solvation = -3819.638737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.90805 -40.53687 -39.18782 -36.36046 -35.18781 -34.69891 -34.32240 -31.54900 -31.15206 -29.72276 -28.03789 -27.83749 -27.39920 -25.79925 -24.58628 -22.62896 -21.62349 -20.48830 -19.87701 -19.42365 -17.99078 -17.69957 -17.47750 -17.13935 -17.01701 -16.46165 -16.16224 -15.86045 -15.43161 -15.18727 -15.00515 -14.89648 -14.66144 -14.42700 -14.35702 -13.96047 -13.78834 -13.72752 -13.63614 -13.38654 -13.36395 -13.12936 -13.06341 -13.02905 -12.77130 -12.69242 -12.62219 -12.47115 -11.98647 -11.94494 -11.84700 -11.66700 -11.19340 -11.05360 -10.99932 -10.57626 -10.37914 -9.90863 -9.71193 -9.02523 -8.54002 -6.24979 0.79592 0.95217 1.28972 1.43754 1.44275 1.51054 1.53414 1.93585 2.15316 2.23393 2.68155 2.84207 3.21166 3.37565 3.68855 3.77651 3.81864 3.94612 4.01604 4.16279 4.23318 4.31216 4.31768 4.39902 4.50465 4.53281 4.56542 4.63422 4.65586 4.73080 4.78869 4.79613 4.87247 4.92111 4.99313 5.04646 5.11703 5.13678 5.18404 5.35349 5.38715 5.46722 5.48423 5.62550 5.68246 6.08623 6.36097 6.42856 6.91037 7.00498 7.11379 8.58557 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015447 B = 0.002798 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.162797 B =10006.474840 C =10747.757161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 C -0.188 4.188 4 C -0.101 4.101 5 C 0.571 3.429 6 O -0.596 6.596 7 N -0.610 5.610 8 C 0.091 3.909 9 C 0.139 3.861 10 H 0.103 0.897 11 N -0.702 5.702 12 C 0.537 3.463 13 O -0.557 6.557 14 C -0.112 4.112 15 S -0.172 6.172 16 C -0.529 4.529 17 H 0.061 0.939 18 C 0.046 3.954 19 N -0.917 5.917 20 Si 0.914 3.086 21 H -0.259 1.259 22 H -0.259 1.259 23 H -0.239 1.239 24 C -0.071 4.071 25 C -0.135 4.135 26 C -0.139 4.139 27 C 0.107 3.893 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.156 0.844 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.041 0.959 35 H 0.098 0.902 36 H 0.047 0.953 37 H 0.412 0.588 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.277 0.723 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.098 0.902 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.117 -30.402 7.691 33.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 C -0.190 4.190 4 C -0.158 4.158 5 C 0.362 3.638 6 O -0.477 6.477 7 N -0.342 5.342 8 C -0.033 4.033 9 C 0.033 3.967 10 H 0.121 0.879 11 N -0.357 5.357 12 C 0.323 3.677 13 O -0.435 6.435 14 C -0.263 4.263 15 S 0.055 5.945 16 C -0.677 4.677 17 H 0.079 0.921 18 C -0.160 4.160 19 N -0.554 5.554 20 Si 0.736 3.264 21 H -0.183 1.183 22 H -0.183 1.183 23 H -0.163 1.163 24 C -0.072 4.072 25 C -0.192 4.192 26 C -0.197 4.197 27 C -0.015 4.015 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.174 0.826 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.116 0.884 36 H 0.065 0.935 37 H 0.251 0.749 38 H 0.135 0.865 39 H 0.121 0.879 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.116 0.884 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.671 -28.870 6.950 33.121 hybrid contribution 1.591 0.369 -0.575 1.731 sum -13.080 -28.501 6.375 32.001 Atomic orbital electron populations 1.21057 0.92749 1.04158 1.01687 1.23620 0.96419 0.97103 0.94088 1.21443 0.97622 0.91487 1.08485 1.20685 0.88451 1.02809 1.03862 1.18802 0.77516 0.85812 0.81661 1.90824 1.60869 1.62912 1.33058 1.48904 1.57513 1.19372 1.08433 1.22956 0.98054 0.84884 0.97450 1.22182 0.84593 0.95374 0.94536 0.87910 1.45850 1.10130 1.06567 1.73115 1.19941 0.89748 0.82832 0.75207 1.90686 1.39460 1.62625 1.50704 1.23258 0.98366 0.97889 1.06782 1.84683 1.10679 1.04308 1.94855 1.22452 0.91036 0.97549 1.56668 0.92051 1.25565 0.97598 0.99873 0.92955 1.70010 1.17815 1.19679 1.47941 0.85865 0.80695 0.79772 0.80039 1.18345 1.18332 1.16290 1.21751 0.99309 0.91159 0.94984 1.21867 0.94889 1.03680 0.98802 1.21875 0.94691 1.03829 0.99292 1.22579 1.04684 0.95157 0.79055 0.90739 0.93626 0.88905 0.82602 0.88814 0.89250 0.93972 0.88372 0.93461 0.74899 0.86523 0.87865 0.91317 0.89383 0.92101 0.91795 0.92628 0.92286 0.89251 0.88402 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.16 71.24 0.65 -0.89 16 2 C -0.09 -1.04 9.97 24.52 0.24 -0.80 16 3 C -0.19 -3.14 4.71 -18.70 -0.09 -3.23 16 4 C -0.10 -1.37 10.02 71.24 0.71 -0.66 16 5 C 0.57 14.24 6.10 86.57 0.53 14.77 16 6 O -0.60 -21.90 17.37 -4.09 -0.07 -21.97 16 7 N -0.61 -11.69 3.30 -812.95 -2.69 -14.38 16 8 C 0.09 2.06 6.77 86.68 0.59 2.65 16 9 C 0.14 2.74 2.85 46.20 0.13 2.87 16 10 H 0.10 2.31 7.26 -2.39 -0.02 2.29 16 11 N -0.70 -16.90 4.56 -436.81 -1.99 -18.89 16 12 C 0.54 18.79 7.85 87.66 0.69 19.48 16 13 O -0.56 -23.78 15.51 -3.04 -0.05 -23.83 16 14 C -0.11 -4.36 6.16 71.24 0.44 -3.93 16 15 S -0.17 -8.88 18.55 -56.49 -1.05 -9.93 16 16 C -0.53 -31.42 10.04 67.95 0.68 -30.73 16 17 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 18 C 0.05 2.72 5.50 84.86 0.47 3.18 16 19 N -0.92 -56.58 13.97 21.65 0.30 -56.27 16 20 Si 0.91 45.80 27.74 68.60 1.90 47.71 16 21 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.24 -12.04 6.74 99.48 0.67 -11.37 16 24 C -0.07 -0.74 0.94 -51.29 -0.05 -0.79 16 25 C -0.13 -0.96 8.22 71.98 0.59 -0.37 16 26 C -0.14 -1.25 7.67 71.98 0.55 -0.69 16 27 C 0.11 1.05 5.76 86.53 0.50 1.54 16 28 H 0.07 0.74 6.73 -2.39 -0.02 0.72 16 29 H 0.04 0.76 8.09 -2.38 -0.02 0.74 16 30 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.90 8.10 -2.39 -0.02 0.88 16 34 H 0.04 0.80 8.08 -2.39 -0.02 0.78 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.05 1.52 7.91 -2.39 -0.02 1.50 16 37 H 0.41 7.95 6.44 -92.70 -0.60 7.35 16 38 H 0.12 4.07 8.14 -2.40 -0.02 4.05 16 39 H 0.10 3.89 8.14 -2.39 -0.02 3.87 16 40 H 0.28 15.81 8.31 -92.71 -0.77 15.04 16 41 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 44 H 0.05 0.54 6.12 -2.39 -0.01 0.52 16 45 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.10 0.68 7.18 -2.39 -0.02 0.66 16 48 H 0.10 0.57 6.71 -2.39 -0.02 0.56 16 Total: -1.00 -84.13 402.08 3.32 -80.81 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.32 Total: 14.34 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 6.64 Total: 2.42 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -4.37 Total: -89.55 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: -0.12 Total: -45.80 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.90 Total: 47.71 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.93 kcal Total: -84.13 3.32 -80.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571974298.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.125 kcal (2) G-P(sol) polarization free energy of solvation -84.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds