Wall clock time and date at job start Sat Apr 11 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32996 * 119.99982 * 2 1 4 4 C 1.50698 * 119.99982 * 180.02562 * 3 2 1 5 5 C 1.47104 * 119.99790 * 359.97438 * 3 2 1 6 6 O 1.21612 * 119.99761 * 280.18476 * 5 3 2 7 7 N 1.34773 * 120.00093 * 100.19112 * 5 3 2 8 8 C 1.46964 * 120.65424 * 0.39118 * 7 5 3 9 9 C 1.53192 * 108.89065 * 126.46418 * 8 7 5 10 10 C 1.53043 * 109.31067 * 54.55589 * 9 8 7 11 11 C 1.53036 * 109.54033 * 298.63773 * 10 9 8 12 12 H 1.09003 * 109.49572 * 301.41285 * 11 10 9 13 13 N 1.46496 * 109.52533 * 181.33384 * 11 10 9 14 14 C 1.34774 * 120.00533 * 85.14467 * 13 11 10 15 15 O 1.21284 * 119.99619 * 0.02562 * 14 13 11 16 16 C 1.50698 * 120.00490 * 180.02562 * 14 13 11 17 17 S 1.81008 * 109.47125 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99964 * 179.97438 * 17 16 14 19 19 H 1.08008 * 119.99951 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00059 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00136 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00051 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47347 * 89.99424 * 22 20 18 24 24 H 1.48495 * 109.47404 * 209.99733 * 22 20 18 25 25 H 1.48500 * 109.46875 * 329.99818 * 22 20 18 26 26 C 1.46929 * 120.63350 * 180.20817 * 7 5 3 27 27 H 1.08998 * 109.58937 * 113.67382 * 26 7 5 28 28 C 1.53004 * 109.58464 * 353.39624 * 26 7 5 29 29 H 1.09005 * 109.47310 * 300.00185 * 1 2 3 30 30 H 1.08997 * 109.47105 * 60.00199 * 1 2 3 31 31 H 1.09004 * 109.47314 * 180.02562 * 1 2 3 32 32 H 1.07995 * 120.00030 * 179.97438 * 2 1 3 33 33 H 1.09006 * 109.47057 * 293.92329 * 4 3 2 34 34 H 1.08996 * 109.47024 * 53.92561 * 4 3 2 35 35 H 1.09004 * 109.46893 * 173.93029 * 4 3 2 36 36 H 1.08995 * 109.59283 * 6.59959 * 8 7 5 37 37 H 1.09007 * 109.46594 * 246.25007 * 8 7 5 38 38 H 1.08997 * 109.49720 * 294.61168 * 9 8 7 39 39 H 1.08993 * 109.49848 * 174.50509 * 9 8 7 40 40 H 1.09001 * 109.46303 * 178.61572 * 10 9 8 41 41 H 1.09006 * 109.45694 * 58.65748 * 10 9 8 42 42 H 0.97005 * 120.00178 * 265.14156 * 13 11 10 43 43 H 1.09000 * 109.46974 * 299.99553 * 16 14 13 44 44 H 1.08998 * 109.47264 * 60.00024 * 16 14 13 45 45 H 0.97004 * 120.00416 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.46740 * 305.70257 * 28 26 7 47 47 H 1.08996 * 109.47379 * 185.69949 * 28 26 7 48 48 H 1.09007 * 109.46983 * 65.69814 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6789 1.1518 -0.0006 5 6 1.4364 2.4257 -0.0006 6 8 0.9715 2.8589 -1.0375 7 7 1.2778 3.1128 1.1480 8 6 1.8411 2.6070 2.4076 9 6 2.7072 3.7017 3.0386 10 6 1.8781 4.9793 3.1889 11 6 1.4224 5.4591 1.8091 12 1 2.2944 5.6402 1.1806 13 7 0.6557 6.6994 1.9505 14 6 1.2951 7.8846 2.0050 15 8 2.5053 7.9243 1.9364 16 6 0.5064 9.1603 2.1511 17 16 1.6412 10.5698 2.1929 18 6 0.4851 11.8885 2.3635 19 1 -0.5729 11.6764 2.4102 20 6 0.9341 13.1997 2.4389 21 7 0.0704 14.1848 2.5658 22 14 2.7639 13.5664 2.3587 23 1 3.1662 13.7719 0.9441 24 1 3.0574 14.7945 3.1402 25 1 3.5230 12.4242 2.9282 26 6 0.5417 4.3843 1.1642 27 1 -0.3753 4.2684 1.7418 28 6 0.1968 4.7955 -0.2686 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.0470 -0.9353 0.0004 33 1 4.0426 0.7348 0.9386 34 1 4.0419 0.5469 -0.8314 35 1 4.0422 2.1738 -0.1092 36 1 2.4526 1.7272 2.2073 37 1 1.0311 2.3442 3.0881 38 1 3.5671 3.8994 2.3985 39 1 3.0509 3.3736 4.0194 40 1 2.4847 5.7526 3.6603 41 1 1.0051 4.7747 3.8088 42 1 -0.3123 6.6677 2.0050 43 1 -0.1730 9.2663 1.3053 44 1 -0.0681 9.1283 3.0769 45 1 0.3842 15.1012 2.6188 46 1 1.1062 4.8174 -0.8692 47 1 -0.2587 5.7857 -0.2628 48 1 -0.5028 4.0763 -0.6946 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572429225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:19 Heat of formation + Delta-G solvation = -52.217901 kcal Electronic energy + Delta-G solvation = -27864.895771 eV Core-core repulsion = 24046.588951 eV Total energy + Delta-G solvation = -3818.306820 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.13937 -39.44054 -37.62590 -35.91394 -34.56105 -33.01055 -32.43977 -31.64903 -30.57131 -29.17726 -27.36049 -25.61978 -25.42518 -24.72922 -23.17550 -22.01323 -20.69714 -20.49281 -18.30903 -17.91966 -16.83128 -16.63484 -16.17891 -15.92271 -15.68222 -15.26325 -14.96789 -14.75573 -14.53769 -14.34625 -14.24802 -13.94023 -13.81888 -13.39943 -13.35553 -13.06203 -12.90522 -12.79639 -12.70339 -12.54181 -12.29718 -12.08786 -12.07792 -11.95104 -11.46940 -11.35512 -11.26614 -11.19045 -11.12753 -11.00610 -10.60953 -9.86383 -9.59457 -9.48913 -9.17604 -9.15048 -9.00034 -8.80844 -8.50316 -6.91845 -6.28845 -4.00583 1.33777 2.30386 2.50251 2.83108 2.95449 3.32091 3.35708 3.50285 3.66127 4.07426 4.32993 4.37916 4.41098 4.49483 4.57263 4.64431 4.73583 4.77042 4.85883 4.96703 5.03142 5.10146 5.11520 5.13059 5.22812 5.24383 5.27893 5.31560 5.37519 5.45181 5.55301 5.60056 5.66741 5.68255 5.76408 5.91263 5.93356 5.95869 6.00760 6.06514 6.08329 6.16052 6.38174 6.56068 7.04725 7.57837 7.86517 7.94183 8.41739 8.47283 9.17305 10.80364 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026592 B = 0.002237 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.710754 B =12515.615122 C =12766.780271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C -0.171 4.171 4 C -0.107 4.107 5 C 0.561 3.439 6 O -0.524 6.524 7 N -0.601 5.601 8 C 0.107 3.893 9 C -0.132 4.132 10 C -0.133 4.133 11 C 0.138 3.862 12 H 0.092 0.908 13 N -0.729 5.729 14 C 0.534 3.466 15 O -0.517 6.517 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.236 1.236 26 C 0.139 3.861 27 H 0.076 0.924 28 C -0.137 4.137 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.399 0.601 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 46 H 0.070 0.930 47 H 0.050 0.950 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.634 -32.055 -0.136 32.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 C -0.174 4.174 4 C -0.164 4.164 5 C 0.350 3.650 6 O -0.401 6.401 7 N -0.334 5.334 8 C -0.016 4.016 9 C -0.171 4.171 10 C -0.172 4.172 11 C 0.032 3.968 12 H 0.110 0.890 13 N -0.383 5.383 14 C 0.320 3.680 15 O -0.391 6.391 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.114 4.114 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C 0.036 3.964 27 H 0.094 0.906 28 C -0.194 4.194 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.233 0.767 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.366 -31.537 -0.798 31.726 hybrid contribution -1.197 0.394 0.255 1.286 sum 2.169 -31.142 -0.544 31.222 Atomic orbital electron populations 1.20961 0.92655 1.02824 1.02779 1.23264 0.96398 0.96720 0.96725 1.21498 0.96916 0.93077 1.05957 1.20716 0.89831 1.03307 1.02573 1.18554 0.79187 0.84144 0.83122 1.90899 1.48860 1.68204 1.32135 1.48093 1.55022 1.21955 1.08378 1.21824 0.97550 0.97253 0.84938 1.21893 0.98695 0.94870 1.01620 1.21962 1.00410 0.97607 0.97186 1.21240 0.95419 0.83427 0.96712 0.89017 1.45894 1.10266 1.05271 1.76894 1.20271 0.88361 0.84239 0.75119 1.90699 1.14004 1.86734 1.47713 1.23279 1.02934 0.95511 1.05727 1.84789 1.12436 0.97724 1.96574 1.22316 0.94862 0.91586 1.58101 0.89376 1.24715 0.98412 0.95009 0.93217 1.69938 1.34367 0.99694 1.47677 0.86731 0.85383 0.80037 0.79666 1.19213 1.19958 1.15949 1.21467 0.93583 0.82281 0.99105 0.90602 1.22216 1.03535 1.00363 0.93320 0.91513 0.90641 0.91470 0.85780 0.90827 0.90833 0.91601 0.89296 0.91114 0.91033 0.90083 0.90419 0.91508 0.76651 0.88451 0.88438 0.91946 0.91090 0.93113 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.16 36.00 0.33 -0.54 16 2 C -0.11 -0.71 9.99 -36.13 -0.36 -1.07 16 3 C -0.17 -1.33 3.98 -102.85 -0.41 -1.74 16 4 C -0.11 -0.65 9.53 36.00 0.34 -0.30 16 5 C 0.56 5.84 5.74 -12.67 -0.07 5.77 16 6 O -0.52 -7.21 12.46 5.27 0.07 -7.14 16 7 N -0.60 -5.36 2.98 -166.57 -0.50 -5.85 16 8 C 0.11 0.68 6.33 -3.69 -0.02 0.65 16 9 C -0.13 -0.95 6.08 -26.61 -0.16 -1.12 16 10 C -0.13 -1.29 5.46 -26.69 -0.15 -1.43 16 11 C 0.14 1.57 2.00 -67.82 -0.14 1.43 16 12 H 0.09 1.32 7.58 -51.93 -0.39 0.92 16 13 N -0.73 -9.05 4.49 -53.69 -0.24 -9.29 16 14 C 0.53 9.27 7.82 -10.99 -0.09 9.18 16 15 O -0.52 -10.94 15.52 5.55 0.09 -10.86 16 16 C -0.12 -2.36 6.16 36.00 0.22 -2.14 16 17 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 18 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 19 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.60 13.97 55.49 0.78 -25.83 16 22 Si 0.86 21.86 27.74 -169.99 -4.72 17.14 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 26 C 0.14 1.36 3.02 -67.60 -0.20 1.16 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 C -0.14 -1.61 7.55 37.16 0.28 -1.33 16 29 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.07 0.62 8.02 -51.93 -0.42 0.21 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 33 H 0.07 0.30 7.91 -51.93 -0.41 -0.11 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.47 7.99 -51.93 -0.42 0.06 16 36 H 0.09 0.45 5.68 -51.93 -0.30 0.15 16 37 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.40 3.85 8.61 -40.82 -0.35 3.50 16 43 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 44 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 45 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.07 1.00 6.78 -51.93 -0.35 0.65 16 47 H 0.05 0.57 7.65 -51.93 -0.40 0.18 16 48 H 0.07 0.92 6.70 -51.93 -0.35 0.57 16 LS Contribution 395.85 15.07 5.97 5.97 Total: -1.00 -35.20 395.85 -8.79 -43.99 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.03 Total: 0.93 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -0.21 Total: -3.48 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.04 Total: -40.97 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.15 Total: -18.00 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.14 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.20 -8.79 -43.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572429225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.232 kcal (2) G-P(sol) polarization free energy of solvation -35.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds