Wall clock time and date at job start Sat Apr 11 2020 06:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32993 * 120.00287 * 2 1 4 4 C 1.50702 * 119.99788 * 359.97438 * 3 2 1 5 5 C 1.47097 * 120.00483 * 179.97438 * 3 2 1 6 6 O 1.21610 * 119.99730 * 285.10758 * 5 3 2 7 7 N 1.34778 * 120.00128 * 105.09924 * 5 3 2 8 8 C 1.46922 * 120.62848 * 8.53630 * 7 5 3 9 9 C 1.53193 * 108.77390 * 126.40766 * 8 7 5 10 10 C 1.53039 * 109.31545 * 54.63613 * 9 8 7 11 11 C 1.53040 * 109.53597 * 298.63559 * 10 9 8 12 12 H 1.09007 * 109.52409 * 301.39388 * 11 10 9 13 13 N 1.46503 * 109.49952 * 181.31414 * 11 10 9 14 14 C 1.34780 * 119.99845 * 85.16007 * 13 11 10 15 15 O 1.21284 * 120.00201 * 359.97438 * 14 13 11 16 16 C 1.50692 * 119.99910 * 179.97438 * 14 13 11 17 17 S 1.81010 * 109.47125 * 179.97438 * 16 14 13 18 18 C 1.76200 * 99.99776 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00359 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99866 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99831 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00057 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47181 * 90.00376 * 22 20 18 24 24 H 1.48506 * 109.47014 * 210.00111 * 22 20 18 25 25 H 1.48496 * 109.47284 * 330.00192 * 22 20 18 26 26 C 1.46928 * 120.62963 * 188.55086 * 7 5 3 27 27 H 1.09000 * 109.70089 * 113.73994 * 26 7 5 28 28 C 1.52999 * 109.58821 * 353.38093 * 26 7 5 29 29 H 1.09005 * 109.47630 * 300.00764 * 1 2 3 30 30 H 1.09002 * 109.47102 * 60.00772 * 1 2 3 31 31 H 1.09003 * 109.47203 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.99862 * 179.97438 * 2 1 3 33 33 H 1.09005 * 109.47148 * 290.91934 * 4 3 2 34 34 H 1.09005 * 109.47422 * 50.91938 * 4 3 2 35 35 H 1.08999 * 109.47245 * 170.92335 * 4 3 2 36 36 H 1.08997 * 109.58813 * 246.19348 * 8 7 5 37 37 H 1.08992 * 109.59083 * 6.62418 * 8 7 5 38 38 H 1.09010 * 109.49535 * 174.58263 * 9 8 7 39 39 H 1.08993 * 109.50292 * 294.64890 * 9 8 7 40 40 H 1.08999 * 109.46647 * 178.61308 * 10 9 8 41 41 H 1.09002 * 109.46326 * 58.64873 * 10 9 8 42 42 H 0.96987 * 119.99933 * 265.16097 * 13 11 10 43 43 H 1.09007 * 109.47180 * 60.00016 * 16 14 13 44 44 H 1.08998 * 109.47486 * 299.99972 * 16 14 13 45 45 H 0.96998 * 120.00202 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.47208 * 282.98632 * 28 26 7 47 47 H 1.08997 * 109.47356 * 42.98261 * 28 26 7 48 48 H 1.09001 * 109.46973 * 162.99030 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4568 -0.0006 5 6 3.6430 1.1518 0.0006 6 8 4.2506 0.8775 1.0177 7 7 4.3173 1.4556 -1.1261 8 6 3.6093 1.9682 -2.3071 9 6 4.2677 3.2800 -2.7458 10 6 5.7647 3.0472 -2.9624 11 6 6.4085 2.5996 -1.6481 12 1 6.2462 3.3610 -0.8851 13 7 7.8469 2.4073 -1.8488 14 6 8.6874 3.4563 -1.7493 15 8 8.2528 4.5595 -1.4942 16 6 10.1670 3.2584 -1.9551 17 16 11.0207 4.8424 -1.7583 18 6 12.6827 4.3317 -2.0439 19 1 12.8997 3.2964 -2.2617 20 6 13.7130 5.2602 -1.9898 21 7 13.4485 6.5221 -1.7248 22 14 15.4751 4.7187 -2.2918 23 1 15.7855 4.8287 -3.7398 24 1 16.3992 5.5880 -1.5201 25 1 15.6414 3.3090 -1.8556 26 6 5.7743 1.2802 -1.1968 27 1 6.0156 0.4950 -1.9134 28 6 6.3126 0.8980 0.1834 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 2.0469 -0.9353 0.0004 33 1 0.9194 2.5878 -0.9608 34 1 0.6754 2.4478 0.7969 35 1 2.1156 3.2789 0.1616 36 1 3.6718 1.2397 -3.1154 37 1 2.5643 2.1500 -2.0563 38 1 3.8142 3.6211 -3.6765 39 1 4.1246 4.0352 -1.9731 40 1 6.2314 3.9732 -3.2985 41 1 5.9066 2.2743 -3.7179 42 1 8.1944 1.5252 -2.0531 43 1 10.3458 2.8719 -2.9586 44 1 10.5444 2.5481 -1.2196 45 1 14.1685 7.1711 -1.6873 46 1 6.3535 1.7849 0.8158 47 1 5.6541 0.1578 0.6380 48 1 7.3136 0.4792 0.0799 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001572429226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:22 Heat of formation + Delta-G solvation = -67.198510 kcal Electronic energy + Delta-G solvation = -27590.479278 eV Core-core repulsion = 23771.522850 eV Total energy + Delta-G solvation = -3818.956428 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.97945 -40.64413 -38.56705 -36.83314 -35.64300 -34.59661 -33.77555 -32.80616 -30.71222 -29.90728 -28.34542 -27.65096 -26.98534 -25.53139 -23.61972 -22.63886 -21.74330 -21.19055 -19.84487 -19.00598 -17.96613 -17.91292 -17.35889 -16.94726 -16.89075 -16.50274 -16.32238 -15.90239 -15.68964 -15.42687 -15.24528 -14.84956 -14.64247 -14.49810 -14.44405 -13.90875 -13.69404 -13.61251 -13.48892 -13.26570 -13.17995 -13.14043 -13.00683 -12.89830 -12.83218 -12.62632 -12.32099 -12.20882 -12.08787 -12.00001 -11.84760 -11.73796 -11.15323 -10.99931 -10.29519 -10.25431 -10.22590 -9.77667 -9.56300 -8.68382 -8.35823 -6.14156 0.79569 1.24046 1.41656 1.44161 1.51967 1.55258 1.57960 1.84497 2.25964 2.37332 2.98287 3.30054 3.37822 3.53094 3.73951 3.90883 3.91557 3.98190 4.03239 4.11495 4.23296 4.28918 4.36446 4.47779 4.49134 4.50556 4.52190 4.64896 4.70516 4.74781 4.81777 4.88237 4.94716 4.98574 5.01588 5.05867 5.13749 5.15431 5.21526 5.29611 5.40443 5.40898 5.52578 5.67198 5.71668 6.18672 6.32640 6.46012 7.05334 7.08084 7.21072 8.73446 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031111 B = 0.002048 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.786817 B =13665.461830 C =13973.936104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.098 4.098 3 C -0.190 4.190 4 C -0.105 4.105 5 C 0.552 3.448 6 O -0.566 6.566 7 N -0.599 5.599 8 C 0.106 3.894 9 C -0.127 4.127 10 C -0.129 4.129 11 C 0.139 3.861 12 H 0.050 0.950 13 N -0.705 5.705 14 C 0.537 3.463 15 O -0.564 6.564 16 C -0.128 4.128 17 S -0.152 6.152 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.266 1.266 24 H -0.278 1.278 25 H -0.258 1.258 26 C 0.147 3.853 27 H 0.110 0.890 28 C -0.161 4.161 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.091 0.909 42 H 0.416 0.584 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.024 0.976 47 H 0.106 0.894 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.876 -17.535 -4.138 34.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.117 4.117 3 C -0.193 4.193 4 C -0.161 4.161 5 C 0.342 3.658 6 O -0.447 6.447 7 N -0.331 5.331 8 C -0.015 4.015 9 C -0.166 4.166 10 C -0.168 4.168 11 C 0.033 3.967 12 H 0.069 0.931 13 N -0.359 5.359 14 C 0.323 3.677 15 O -0.442 6.442 16 C -0.280 4.280 17 S 0.075 5.925 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.191 1.191 24 H -0.203 1.203 25 H -0.182 1.182 26 C 0.044 3.956 27 H 0.127 0.873 28 C -0.218 4.218 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.254 0.746 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.043 0.957 47 H 0.124 0.876 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -29.231 -15.685 -3.169 33.325 hybrid contribution 2.286 -1.145 -0.131 2.560 sum -26.945 -16.830 -3.300 31.940 Atomic orbital electron populations 1.20943 0.89826 1.03799 1.03369 1.23403 0.97936 0.95906 0.94473 1.21383 0.90860 0.98560 1.08462 1.20792 0.99385 0.91743 1.04210 1.19196 0.88994 0.75229 0.82353 1.90729 1.69069 1.50728 1.34135 1.48145 1.06716 1.64115 1.14087 1.22101 0.97237 0.95334 0.86878 1.21891 0.94023 0.97508 1.03160 1.21927 0.96333 1.01973 0.96524 1.21374 0.79596 0.97618 0.98087 0.93129 1.45630 1.06417 1.11306 1.72574 1.20057 0.87864 0.84339 0.75400 1.90691 1.78607 1.26359 1.48542 1.23365 0.94138 1.03785 1.06677 1.85596 1.03747 1.09813 1.93316 1.23207 0.92212 0.98092 1.55899 0.89861 1.26148 1.04683 0.94408 0.93991 1.70186 1.34769 1.03091 1.46745 0.84938 0.75666 0.78635 0.78641 1.19148 1.20339 1.18238 1.21420 0.79656 0.95498 0.99074 0.87278 1.22708 1.01194 1.02936 0.94952 0.90567 0.89231 0.90746 0.87491 0.88126 0.89950 0.93419 0.88477 0.87205 0.87397 0.92958 0.93534 0.89020 0.74632 0.86852 0.87424 0.91994 0.95652 0.87641 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 9.13 71.23 0.65 0.02 16 2 C -0.10 -1.08 9.97 24.52 0.24 -0.84 16 3 C -0.19 -2.72 4.43 -18.70 -0.08 -2.80 16 4 C -0.10 -1.04 8.09 71.24 0.58 -0.47 16 5 C 0.55 11.84 6.87 86.57 0.59 12.43 16 6 O -0.57 -16.87 12.66 -4.06 -0.05 -16.92 16 7 N -0.60 -10.58 2.97 -799.29 -2.38 -12.96 16 8 C 0.11 1.11 6.28 86.36 0.54 1.66 16 9 C -0.13 -1.78 6.08 30.67 0.19 -1.59 16 10 C -0.13 -2.56 5.46 30.62 0.17 -2.40 16 11 C 0.14 3.42 1.96 45.07 0.09 3.51 16 12 H 0.05 1.69 7.48 -2.38 -0.02 1.68 16 13 N -0.71 -18.55 4.83 -442.15 -2.13 -20.68 16 14 C 0.54 20.39 7.81 87.65 0.68 21.08 16 15 O -0.56 -26.98 15.52 -3.04 -0.05 -27.02 16 16 C -0.13 -5.18 6.16 71.23 0.44 -4.74 16 17 S -0.15 -8.57 20.57 -56.49 -1.16 -9.74 16 18 C -0.55 -31.55 9.50 67.96 0.65 -30.90 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.71 5.49 84.86 0.47 1.18 16 21 N -0.91 -56.63 13.22 21.65 0.29 -56.35 16 22 Si 1.00 44.02 29.55 68.60 2.03 46.05 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 26 C 0.15 2.92 3.03 44.97 0.14 3.06 16 27 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 28 C -0.16 -4.09 7.67 71.98 0.55 -3.53 16 29 H 0.08 0.39 7.62 -2.38 -0.02 0.37 16 30 H 0.09 0.19 8.10 -2.39 -0.02 0.17 16 31 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.11 1.30 8.05 -2.91 -0.02 1.28 16 33 H 0.10 0.44 7.48 -2.38 -0.02 0.42 16 34 H 0.08 0.69 7.44 -2.38 -0.02 0.67 16 35 H 0.05 0.65 8.00 -2.39 -0.02 0.63 16 36 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.11 0.78 4.90 -2.39 -0.01 0.77 16 38 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.42 7.85 8.60 -92.72 -0.80 7.05 16 43 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 44 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 45 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 46 H 0.02 0.80 7.72 -2.39 -0.02 0.78 16 47 H 0.11 2.91 5.10 -67.64 -0.34 2.57 16 48 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -84.27 396.59 2.26 -82.01 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -0.17 Total: 19.94 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 5.89 Total: -4.33 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -4.22 Total: -89.99 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -0.10 Total: -43.94 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.74 kcal Total: -84.27 2.26 -82.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572429226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.810 kcal (2) G-P(sol) polarization free energy of solvation -84.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds