Wall clock time and date at job start Sat Apr 11 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47020 * 2 1 4 4 C 1.50701 * 120.00284 * 271.98176 * 3 2 1 5 5 C 1.32994 * 120.00036 * 91.98008 * 3 2 1 6 6 C 1.47102 * 119.99950 * 352.46869 * 5 3 2 7 7 O 1.21622 * 119.99921 * 353.33607 * 6 5 3 8 8 N 1.34775 * 119.99997 * 173.34326 * 6 5 3 9 9 C 1.46492 * 120.00187 * 359.97438 * 8 6 5 10 10 C 1.46504 * 119.99656 * 179.97438 * 8 6 5 11 11 C 1.53778 * 113.61272 * 219.13297 * 10 8 6 12 12 C 1.53954 * 87.02150 * 220.05167 * 11 10 8 13 13 N 1.46500 * 113.53606 * 270.81131 * 12 11 10 14 14 C 1.34779 * 120.00506 * 252.49344 * 13 12 11 15 15 O 1.21278 * 119.99517 * 0.02562 * 14 13 12 16 16 C 1.50690 * 120.00388 * 180.02562 * 14 13 12 17 17 S 1.81004 * 109.47356 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99781 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00570 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99420 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00473 * 0.02562 * 20 18 17 22 22 Si 1.86810 * 119.99860 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46953 * 60.00013 * 22 20 18 24 24 H 1.48495 * 109.46710 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.46710 * 300.00080 * 22 20 18 26 26 C 1.53782 * 113.60990 * 121.52923 * 10 8 6 27 27 H 1.08998 * 109.47020 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46853 * 299.99942 * 1 2 3 29 29 H 1.08995 * 109.46961 * 59.99911 * 1 2 3 30 30 H 1.09006 * 109.47192 * 240.00410 * 2 1 3 31 31 H 1.09002 * 109.47598 * 119.99940 * 2 1 3 32 32 H 1.09001 * 109.47049 * 270.00198 * 4 3 2 33 33 H 1.09002 * 109.46946 * 29.99632 * 4 3 2 34 34 H 1.08998 * 109.47577 * 149.99797 * 4 3 2 35 35 H 1.07998 * 120.00562 * 172.46975 * 5 3 2 36 36 H 1.09006 * 109.47159 * 90.00357 * 9 8 6 37 37 H 1.08997 * 109.47543 * 210.00024 * 9 8 6 38 38 H 1.08997 * 109.47325 * 330.00474 * 9 8 6 39 39 H 1.09003 * 112.85374 * 350.33074 * 10 8 6 40 40 H 1.09001 * 113.61660 * 334.57096 * 11 10 8 41 41 H 1.09002 * 113.61170 * 105.47736 * 11 10 8 42 42 H 1.08997 * 113.74664 * 139.94629 * 12 11 10 43 43 H 0.97008 * 119.99647 * 72.49816 * 13 12 11 44 44 H 1.09000 * 109.47422 * 300.00432 * 16 14 13 45 45 H 1.09001 * 109.47267 * 59.99512 * 16 14 13 46 46 H 0.96996 * 119.99972 * 180.02562 * 21 20 18 47 47 H 1.09002 * 113.61226 * 254.52430 * 26 10 8 48 48 H 1.08992 * 113.61865 * 25.43178 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2410 2.1464 -1.3043 5 6 2.2915 2.0345 1.1511 6 6 1.9335 1.3911 2.4245 7 8 1.2933 0.3570 2.4245 8 7 2.3148 1.9475 3.5913 9 6 3.0863 3.1928 3.5914 10 6 1.9578 1.3069 4.8596 11 6 1.5628 2.3026 5.9629 12 6 2.3464 1.4074 6.9399 13 7 1.5348 0.3451 7.5392 14 6 1.1712 0.4242 8.8346 15 8 1.5156 1.3751 9.5040 16 6 0.3370 -0.6688 9.4512 17 16 0.0175 -0.2764 11.1891 18 6 -0.9465 -1.6784 11.6470 19 1 -1.1649 -2.4450 10.9183 20 6 -1.4252 -1.7975 12.9444 21 7 -1.1595 -0.8630 13.8325 22 14 -2.4479 -3.2836 13.4298 23 1 -1.6516 -4.5203 13.2262 24 1 -2.8344 -3.1728 14.8593 25 1 -3.6711 -3.3384 12.5896 26 6 3.1727 0.9426 5.7291 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 1.8935 -0.5138 0.8900 32 1 3.2596 1.9789 -1.6543 33 1 1.5357 1.7709 -2.0458 34 1 2.0785 3.2140 -1.1563 35 1 2.7648 3.0053 1.1510 36 1 2.4043 4.0428 3.6189 37 1 3.7344 3.2187 4.4673 38 1 3.6941 3.2438 2.6881 39 1 1.2484 0.4886 4.7356 40 1 1.9984 3.2934 5.8333 41 1 0.4913 2.3328 6.1605 42 1 2.9260 1.9637 7.6765 43 1 1.2592 -0.4154 7.0037 44 1 -0.6095 -0.7490 8.9165 45 1 0.8727 -1.6158 9.3854 46 1 -1.4937 -0.9466 14.7392 47 1 3.3990 -0.1237 5.7383 48 1 4.0493 1.5607 5.5355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001572556340.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:29 Heat of formation + Delta-G solvation = -57.115620 kcal Electronic energy + Delta-G solvation = -26566.494297 eV Core-core repulsion = 22747.975096 eV Total energy + Delta-G solvation = -3818.519201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.72538 -40.68443 -39.28769 -36.87301 -35.88898 -34.59393 -33.94725 -31.76806 -30.66777 -29.00699 -27.99926 -27.67409 -26.77045 -25.57848 -24.39175 -22.21991 -21.71371 -19.98745 -19.83471 -19.02745 -18.46843 -17.89284 -17.16899 -17.02440 -16.88390 -16.55593 -16.24342 -16.04282 -15.69214 -15.37140 -14.94234 -14.67432 -14.58907 -14.31056 -14.09615 -13.90731 -13.76309 -13.69174 -13.54648 -13.22172 -13.17804 -13.15756 -12.95453 -12.88020 -12.87334 -12.79247 -12.59121 -12.00021 -11.92045 -11.75665 -11.65528 -11.47586 -11.13792 -10.98898 -10.41740 -10.30081 -10.12047 -10.05974 -9.47079 -8.67486 -8.35320 -6.13474 0.42452 1.25231 1.43151 1.45247 1.55420 1.56047 2.08803 2.22079 2.27373 2.30288 2.98569 3.30208 3.36650 3.57555 3.70289 3.84252 3.84893 3.93323 4.00599 4.17794 4.28214 4.30706 4.47449 4.48940 4.52329 4.55450 4.64716 4.66409 4.68689 4.72339 4.79361 4.82206 4.85073 4.96650 4.97196 4.99168 5.06895 5.10136 5.26983 5.36470 5.40870 5.50456 5.55325 5.63166 5.75564 6.18850 6.44077 6.50497 7.05811 7.19972 7.26480 8.73591 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019933 B = 0.001848 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.361630 B =15148.580527 C =16285.415665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.108 4.108 3 C -0.024 4.024 4 C -0.125 4.125 5 C -0.247 4.247 6 C 0.532 3.468 7 O -0.572 6.572 8 N -0.603 5.603 9 C 0.067 3.933 10 C 0.125 3.875 11 C -0.153 4.153 12 C 0.117 3.883 13 N -0.700 5.700 14 C 0.539 3.461 15 O -0.561 6.561 16 C -0.132 4.132 17 S -0.146 6.146 18 C -0.550 4.550 19 H 0.082 0.918 20 C 0.014 3.986 21 N -0.910 5.910 22 Si 0.998 3.002 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.137 4.137 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.155 0.845 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.413 0.587 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.272 0.728 47 H 0.080 0.920 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.838 7.133 -33.646 36.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.145 4.145 3 C -0.026 4.026 4 C -0.181 4.181 5 C -0.267 4.267 6 C 0.326 3.674 7 O -0.454 6.454 8 N -0.333 5.333 9 C -0.075 4.075 10 C 0.020 3.980 11 C -0.192 4.192 12 C 0.010 3.990 13 N -0.353 5.353 14 C 0.326 3.674 15 O -0.439 6.439 16 C -0.283 4.283 17 S 0.081 5.919 18 C -0.697 4.697 19 H 0.100 0.900 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.819 3.181 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.176 4.176 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.172 0.828 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.250 0.750 44 H 0.125 0.875 45 H 0.128 0.872 46 H 0.081 0.919 47 H 0.099 0.901 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.078 8.270 -32.365 35.194 hybrid contribution -1.246 -2.080 -0.022 2.425 sum 9.832 6.190 -32.387 34.408 Atomic orbital electron populations 1.21467 0.94583 1.01473 1.00945 1.20976 0.96830 0.93710 1.03013 1.22863 0.88784 0.95065 0.95858 1.21055 1.03754 1.00414 0.92878 1.22565 1.09750 1.03696 0.90682 1.19184 0.78939 0.83902 0.85389 1.90720 1.41736 1.25335 1.87649 1.47793 1.54636 1.26088 1.04831 1.22077 0.96148 0.84412 1.04856 1.22517 0.97531 0.96262 0.81650 1.23910 1.01097 0.99743 0.94485 1.21770 0.93165 0.89567 0.94453 1.45510 1.54269 1.25563 1.09938 1.20012 0.79120 0.86201 0.82114 1.90682 1.55813 1.34934 1.62423 1.23389 1.03031 1.01094 1.00828 1.85512 1.68988 1.33150 1.04241 1.23180 1.38360 1.08306 0.99888 0.90034 1.26117 0.97235 1.00512 0.95182 1.70170 1.44737 1.35156 1.04562 0.85015 0.78306 0.77377 0.77370 1.18682 1.20241 1.18786 1.23744 0.98159 1.03368 0.92376 0.92968 0.94259 0.92101 0.90619 0.90560 0.88968 0.90278 0.89876 0.82799 0.91619 0.89542 0.88842 0.88195 0.86749 0.92088 0.88702 0.74979 0.87451 0.87220 0.91946 0.90103 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.44 71.98 0.68 -1.53 16 2 C -0.11 -1.74 5.31 29.85 0.16 -1.59 16 3 C -0.02 -0.29 5.36 -17.61 -0.09 -0.39 16 4 C -0.12 -0.70 10.04 71.24 0.72 0.02 16 5 C -0.25 -3.22 8.74 23.43 0.20 -3.01 16 6 C 0.53 10.30 7.46 86.57 0.65 10.95 16 7 O -0.57 -15.00 11.10 -4.10 -0.05 -15.04 16 8 N -0.60 -9.30 3.08 -823.92 -2.54 -11.84 16 9 C 0.07 0.51 8.71 127.77 1.11 1.62 16 10 C 0.12 2.21 4.09 45.52 0.19 2.40 16 11 C -0.15 -2.86 7.34 31.18 0.23 -2.63 16 12 C 0.12 2.53 4.33 45.58 0.20 2.72 16 13 N -0.70 -18.23 5.26 -439.77 -2.31 -20.55 16 14 C 0.54 20.11 7.85 87.65 0.69 20.80 16 15 O -0.56 -25.86 15.46 -3.02 -0.05 -25.91 16 16 C -0.13 -5.36 6.16 71.23 0.44 -4.92 16 17 S -0.15 -8.20 20.57 -56.49 -1.16 -9.36 16 18 C -0.55 -31.82 9.50 67.96 0.65 -31.17 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.83 5.50 84.86 0.47 1.30 16 21 N -0.91 -56.27 13.22 21.65 0.29 -55.98 16 22 Si 1.00 44.11 29.55 68.60 2.03 46.14 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 26 C -0.14 -2.12 7.36 31.12 0.23 -1.89 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.04 0.87 6.85 -2.39 -0.02 0.86 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.94 8.13 -2.38 -0.02 0.92 16 31 H 0.08 1.67 5.61 -2.39 -0.01 1.66 16 32 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.08 0.38 8.12 -2.39 -0.02 0.37 16 34 H 0.08 0.30 8.07 -2.39 -0.02 0.28 16 35 H 0.15 1.06 6.35 -2.91 -0.02 1.04 16 36 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.09 0.48 6.33 -2.39 -0.02 0.47 16 38 H 0.09 0.37 6.19 -2.39 -0.01 0.36 16 39 H 0.10 2.21 7.21 -2.39 -0.02 2.19 16 40 H 0.11 1.67 6.81 -2.39 -0.02 1.65 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.09 2.40 7.46 -2.39 -0.02 2.38 16 43 H 0.41 8.60 8.70 -92.70 -0.81 7.79 16 44 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 45 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 46 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 47 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.12 1.34 6.82 -2.39 -0.02 1.32 16 Total: -1.00 -81.17 400.67 2.87 -78.30 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.16 Total: 21.54 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 6.50 Total: -7.31 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -4.57 Total: -88.37 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.09 Total: -40.95 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.36 kcal Total: -81.17 2.87 -78.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572556340.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.188 kcal (2) G-P(sol) polarization free energy of solvation -81.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds