Wall clock time and date at job start Sat Apr 11 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47326 * 2 1 4 4 C 1.50692 * 120.00006 * 272.00311 * 3 2 1 5 5 C 1.32998 * 119.99743 * 92.00557 * 3 2 1 6 6 C 1.47101 * 120.00040 * 352.42434 * 5 3 2 7 7 O 1.21612 * 120.00065 * 353.43981 * 6 5 3 8 8 N 1.34776 * 119.99816 * 173.43595 * 6 5 3 9 9 C 1.46499 * 120.00216 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47447 * 179.97438 * 9 8 6 11 11 H 1.09005 * 112.84287 * 43.80473 * 10 9 8 12 12 C 1.53779 * 113.61422 * 174.99723 * 10 9 8 13 13 C 1.53784 * 87.07923 * 139.98790 * 12 10 9 14 14 H 1.08995 * 113.61674 * 89.11789 * 13 12 10 15 15 N 1.46499 * 113.61468 * 220.02314 * 13 12 10 16 16 C 1.34780 * 120.00188 * 205.00050 * 15 13 12 17 17 O 1.21274 * 119.99528 * 359.97438 * 16 15 13 18 18 C 1.50693 * 119.99922 * 179.97438 * 16 15 13 19 19 S 1.81003 * 109.46943 * 179.97438 * 18 16 15 20 20 C 1.76206 * 100.00043 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00072 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00083 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99552 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00111 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46634 * 60.00670 * 24 22 20 26 26 H 1.48497 * 109.47045 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47077 * 300.00715 * 24 22 20 28 28 C 1.53781 * 113.61803 * 272.50062 * 10 9 8 29 29 H 1.08996 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46981 * 300.00063 * 1 2 3 31 31 H 1.09000 * 109.47036 * 59.99934 * 1 2 3 32 32 H 1.08993 * 109.46965 * 239.99510 * 2 1 3 33 33 H 1.09011 * 109.46825 * 120.00496 * 2 1 3 34 34 H 1.08993 * 109.47349 * 269.99891 * 4 3 2 35 35 H 1.09009 * 109.46909 * 150.00000 * 4 3 2 36 36 H 1.09006 * 109.47188 * 30.00479 * 4 3 2 37 37 H 1.08003 * 119.99947 * 172.43405 * 5 3 2 38 38 H 0.97008 * 120.00175 * 0.02562 * 8 6 5 39 39 H 1.08997 * 109.46927 * 300.00279 * 9 8 6 40 40 H 1.09004 * 109.47009 * 59.99727 * 9 8 6 41 41 H 1.08998 * 113.61748 * 254.53371 * 12 10 9 42 42 H 1.08996 * 113.61469 * 25.35468 * 12 10 9 43 43 H 0.97001 * 120.00334 * 24.99271 * 15 13 12 44 44 H 1.08996 * 109.47731 * 299.99504 * 18 16 15 45 45 H 1.09007 * 109.47441 * 60.00107 * 18 16 15 46 46 H 0.97005 * 119.99978 * 179.97438 * 23 22 20 47 47 H 1.09000 * 113.60895 * 334.56255 * 28 10 9 48 48 H 1.09001 * 113.61491 * 105.46951 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2406 2.1463 -1.3042 5 6 2.2921 2.0342 1.1511 6 6 1.9337 1.3910 2.4246 7 8 1.2944 0.3564 2.4245 8 7 2.3139 1.9481 3.5914 9 6 1.9575 1.3073 4.8597 10 6 2.5065 2.1368 6.0222 11 1 2.3460 3.2070 5.8913 12 6 2.0827 1.6149 7.4053 13 6 3.5100 1.9386 7.8776 14 1 3.6253 2.9548 8.2545 15 7 4.0734 0.9292 8.7776 16 6 5.0427 1.2699 9.6499 17 8 5.4488 2.4119 9.6894 18 6 5.6218 0.2317 10.5760 19 16 6.8927 0.9927 11.6161 20 6 7.3836 -0.4044 12.5710 21 1 6.9134 -1.3627 12.4070 22 6 8.3753 -0.2736 13.5333 23 7 8.9487 0.8944 13.7327 24 14 8.8951 -1.7545 14.5461 25 1 9.4091 -2.8158 13.6434 26 1 9.9626 -1.3535 15.4974 27 1 7.7267 -2.2714 15.3030 28 6 3.9482 1.7713 6.4130 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5140 0.8900 34 1 3.2590 1.9789 -1.6546 35 1 2.0782 3.2140 -1.1560 36 1 1.5349 1.7710 -2.0455 37 1 2.7660 3.0047 1.1509 38 1 2.8236 2.7735 3.5915 39 1 0.8726 1.2407 4.9408 40 1 2.3865 0.3058 4.8939 41 1 1.3157 2.2228 7.8852 42 1 1.8482 0.5506 7.4174 43 1 3.7488 0.0157 8.7458 44 1 4.8310 -0.1744 11.2066 45 1 6.0666 -0.5717 9.9886 46 1 9.6415 0.9860 14.4055 47 1 4.2249 0.7493 6.1541 48 1 4.6871 2.5054 6.0918 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573140169.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:28 Heat of formation + Delta-G solvation = -52.435964 kcal Electronic energy + Delta-G solvation = -25638.634022 eV Core-core repulsion = 21820.317746 eV Total energy + Delta-G solvation = -3818.316276 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48173 -39.83321 -38.25072 -36.48788 -34.80474 -33.16124 -32.42929 -31.29360 -29.66709 -28.83214 -27.19111 -25.97285 -25.48709 -24.06081 -22.76824 -21.39576 -20.41089 -20.03072 -18.90658 -17.80343 -17.31109 -16.66942 -16.33351 -15.84174 -15.77378 -15.18725 -15.15563 -14.83668 -14.80520 -14.47807 -14.06550 -14.02035 -13.61375 -13.23588 -13.21002 -13.11199 -12.76480 -12.71022 -12.69835 -12.49473 -12.32359 -12.29151 -11.83011 -11.55035 -11.38658 -11.13440 -11.05181 -11.04040 -10.92398 -10.77379 -10.62228 -9.83078 -9.80993 -9.56713 -9.38419 -9.19918 -9.06385 -8.85998 -8.24582 -6.50346 -6.21742 -3.92462 0.98846 2.89029 2.98474 3.05449 3.06285 3.23522 3.27699 3.31848 3.72431 4.20199 4.20695 4.22381 4.33836 4.41006 4.47947 4.65525 4.76659 4.88808 4.95306 5.01723 5.05883 5.10568 5.13412 5.21750 5.23888 5.29470 5.36584 5.40125 5.44937 5.49767 5.54974 5.61029 5.71655 5.77928 5.78775 5.83595 5.88919 5.97819 6.04766 6.12818 6.14989 6.22354 6.26616 6.66370 7.23035 7.59134 7.71119 7.97637 8.34863 8.60486 9.23491 10.85633 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025004 B = 0.001461 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.564871 B =19158.463106 C =19394.488420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.107 4.107 3 C -0.024 4.024 4 C -0.129 4.129 5 C -0.238 4.238 6 C 0.543 3.457 7 O -0.537 6.537 8 N -0.727 5.727 9 C 0.133 3.867 10 C -0.123 4.123 11 H 0.099 0.901 12 C -0.136 4.136 13 C 0.127 3.873 14 H 0.115 0.885 15 N -0.729 5.729 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.155 4.155 19 S -0.060 6.060 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C -0.148 4.148 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.125 0.875 38 H 0.401 0.599 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.399 0.601 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.086 0.914 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.476 1.904 -27.991 33.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.144 4.144 3 C -0.026 4.026 4 C -0.185 4.185 5 C -0.258 4.258 6 C 0.333 3.667 7 O -0.417 6.417 8 N -0.378 5.378 9 C 0.010 3.990 10 C -0.143 4.143 11 H 0.118 0.882 12 C -0.175 4.175 13 C 0.021 3.979 14 H 0.133 0.867 15 N -0.381 5.381 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.187 4.187 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.143 0.857 38 H 0.235 0.765 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.233 0.767 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.105 0.895 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.108 3.186 -27.767 32.770 hybrid contribution 0.075 -2.181 0.614 2.267 sum -17.033 1.005 -27.153 32.069 Atomic orbital electron populations 1.21521 0.94147 1.01739 1.01397 1.21024 0.97174 0.92523 1.03651 1.22593 0.89853 0.95716 0.94474 1.21015 1.02836 1.00141 0.94531 1.22355 1.08895 1.02591 0.92002 1.18575 0.79511 0.84301 0.84306 1.90733 1.40041 1.23531 1.87424 1.45931 1.57540 1.28523 1.05765 1.21324 1.00128 0.96247 0.81313 1.22625 0.97347 1.00417 0.93862 0.88234 1.23329 0.97187 1.02277 0.94664 1.22357 0.92426 0.94631 0.88460 0.86682 1.45990 1.40462 1.12746 1.38949 1.20350 0.78505 0.89464 0.79752 1.90689 1.59126 1.20788 1.68645 1.23545 1.04621 1.01132 1.01238 1.85381 1.41305 1.15337 1.41354 1.22833 1.25494 0.96506 1.23658 0.90979 1.24985 0.95245 0.96838 0.96449 1.70009 1.24697 1.23007 1.32592 0.86226 0.78314 0.81514 0.79461 1.19943 1.20796 1.19935 1.23596 0.95842 1.02669 0.96563 0.92667 0.91841 0.93769 0.92130 0.87915 0.90358 0.91054 0.90832 0.85675 0.76489 0.91367 0.91262 0.90372 0.89247 0.76721 0.89207 0.89237 0.92130 0.89511 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 9.44 37.16 0.35 -0.67 16 2 C -0.11 -0.84 5.31 -27.88 -0.15 -0.99 16 3 C -0.02 -0.16 5.36 -101.17 -0.54 -0.71 16 4 C -0.13 -0.53 10.04 36.00 0.36 -0.17 16 5 C -0.24 -1.65 9.62 -37.80 -0.36 -2.01 16 6 C 0.54 4.91 7.60 -12.67 -0.10 4.81 16 7 O -0.54 -6.37 11.63 5.27 0.06 -6.31 16 8 N -0.73 -5.15 5.55 -61.49 -0.34 -5.49 16 9 C 0.13 0.99 5.51 -4.04 -0.02 0.96 16 10 C -0.12 -0.82 3.75 -89.81 -0.34 -1.16 16 11 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 12 C -0.14 -1.01 7.39 -25.92 -0.19 -1.20 16 13 C 0.13 1.36 4.24 -67.12 -0.28 1.07 16 14 H 0.12 1.45 7.47 -51.93 -0.39 1.06 16 15 N -0.73 -9.29 5.35 -53.02 -0.28 -9.58 16 16 C 0.53 9.74 7.85 -10.99 -0.09 9.66 16 17 O -0.52 -11.56 15.46 5.56 0.09 -11.48 16 18 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.15 13.22 55.49 0.73 -25.41 16 24 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 C -0.15 -1.31 7.43 -25.92 -0.19 -1.50 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.61 6.86 -51.93 -0.36 0.25 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 33 H 0.10 1.04 5.61 -51.92 -0.29 0.75 16 34 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.24 8.07 -51.92 -0.42 -0.18 16 36 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 37 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 38 H 0.40 1.98 8.46 -40.82 -0.35 1.63 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.59 7.84 -51.93 -0.41 0.18 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.60 8.08 -51.93 -0.42 0.18 16 43 H 0.40 3.97 8.73 -40.82 -0.36 3.61 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 45 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 46 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.09 0.79 7.89 -51.93 -0.41 0.38 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 410.08 15.07 6.18 6.18 Total: -1.00 -35.69 410.08 -9.94 -45.63 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -8.01 Total: 1.70 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -1.13 Total: -7.76 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.11 Total: -40.48 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.15 Total: -17.79 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.69 -9.94 -45.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573140169.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.805 kcal (2) G-P(sol) polarization free energy of solvation -35.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds