Wall clock time and date at job start Sat Apr 11 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47326 * 2 1 4 4 C 1.50692 * 120.00006 * 272.00311 * 3 2 1 5 5 C 1.32998 * 119.99743 * 92.00557 * 3 2 1 6 6 C 1.47101 * 120.00040 * 352.42434 * 5 3 2 7 7 O 1.21612 * 120.00065 * 353.43981 * 6 5 3 8 8 N 1.34776 * 119.99816 * 173.43595 * 6 5 3 9 9 C 1.46499 * 120.00216 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47447 * 179.97438 * 9 8 6 11 11 H 1.09005 * 112.84287 * 43.80473 * 10 9 8 12 12 C 1.53779 * 113.61422 * 174.99723 * 10 9 8 13 13 C 1.53784 * 87.07923 * 139.98790 * 12 10 9 14 14 H 1.08995 * 113.61674 * 89.11789 * 13 12 10 15 15 N 1.46499 * 113.61468 * 220.02314 * 13 12 10 16 16 C 1.34780 * 120.00188 * 205.00050 * 15 13 12 17 17 O 1.21274 * 119.99528 * 359.97438 * 16 15 13 18 18 C 1.50693 * 119.99922 * 179.97438 * 16 15 13 19 19 S 1.81003 * 109.46943 * 179.97438 * 18 16 15 20 20 C 1.76206 * 100.00043 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00072 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00083 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99552 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00111 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46634 * 60.00670 * 24 22 20 26 26 H 1.48497 * 109.47045 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47077 * 300.00715 * 24 22 20 28 28 C 1.53781 * 113.61803 * 272.50062 * 10 9 8 29 29 H 1.08996 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46981 * 300.00063 * 1 2 3 31 31 H 1.09000 * 109.47036 * 59.99934 * 1 2 3 32 32 H 1.08993 * 109.46965 * 239.99510 * 2 1 3 33 33 H 1.09011 * 109.46825 * 120.00496 * 2 1 3 34 34 H 1.08993 * 109.47349 * 269.99891 * 4 3 2 35 35 H 1.09009 * 109.46909 * 150.00000 * 4 3 2 36 36 H 1.09006 * 109.47188 * 30.00479 * 4 3 2 37 37 H 1.08003 * 119.99947 * 172.43405 * 5 3 2 38 38 H 0.97008 * 120.00175 * 0.02562 * 8 6 5 39 39 H 1.08997 * 109.46927 * 300.00279 * 9 8 6 40 40 H 1.09004 * 109.47009 * 59.99727 * 9 8 6 41 41 H 1.08998 * 113.61748 * 254.53371 * 12 10 9 42 42 H 1.08996 * 113.61469 * 25.35468 * 12 10 9 43 43 H 0.97001 * 120.00334 * 24.99271 * 15 13 12 44 44 H 1.08996 * 109.47731 * 299.99504 * 18 16 15 45 45 H 1.09007 * 109.47441 * 60.00107 * 18 16 15 46 46 H 0.97005 * 119.99978 * 179.97438 * 23 22 20 47 47 H 1.09000 * 113.60895 * 334.56255 * 28 10 9 48 48 H 1.09001 * 113.61491 * 105.46951 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2406 2.1463 -1.3042 5 6 2.2921 2.0342 1.1511 6 6 1.9337 1.3910 2.4246 7 8 1.2944 0.3564 2.4245 8 7 2.3139 1.9481 3.5914 9 6 1.9575 1.3073 4.8597 10 6 2.5065 2.1368 6.0222 11 1 2.3460 3.2070 5.8913 12 6 2.0827 1.6149 7.4053 13 6 3.5100 1.9386 7.8776 14 1 3.6253 2.9548 8.2545 15 7 4.0734 0.9292 8.7776 16 6 5.0427 1.2699 9.6499 17 8 5.4488 2.4119 9.6894 18 6 5.6218 0.2317 10.5760 19 16 6.8927 0.9927 11.6161 20 6 7.3836 -0.4044 12.5710 21 1 6.9134 -1.3627 12.4070 22 6 8.3753 -0.2736 13.5333 23 7 8.9487 0.8944 13.7327 24 14 8.8951 -1.7545 14.5461 25 1 9.4091 -2.8158 13.6434 26 1 9.9626 -1.3535 15.4974 27 1 7.7267 -2.2714 15.3030 28 6 3.9482 1.7713 6.4130 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5140 0.8900 34 1 3.2590 1.9789 -1.6546 35 1 2.0782 3.2140 -1.1560 36 1 1.5349 1.7710 -2.0455 37 1 2.7660 3.0047 1.1509 38 1 2.8236 2.7735 3.5915 39 1 0.8726 1.2407 4.9408 40 1 2.3865 0.3058 4.8939 41 1 1.3157 2.2228 7.8852 42 1 1.8482 0.5506 7.4174 43 1 3.7488 0.0157 8.7458 44 1 4.8310 -0.1744 11.2066 45 1 6.0666 -0.5717 9.9886 46 1 9.6415 0.9860 14.4055 47 1 4.2249 0.7493 6.1541 48 1 4.6871 2.5054 6.0918 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573140169.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:27 Heat of formation + Delta-G solvation = -76.816781 kcal Electronic energy + Delta-G solvation = -25639.691253 eV Core-core repulsion = 21820.317746 eV Total energy + Delta-G solvation = -3819.373508 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.29152 -40.73675 -39.39015 -37.05671 -35.58580 -34.59042 -34.30167 -31.88585 -30.91854 -29.59325 -27.90133 -27.59613 -26.66452 -24.66963 -23.62887 -22.04405 -21.66676 -20.82191 -19.78362 -19.47556 -17.96565 -17.79143 -17.47085 -16.87933 -16.71031 -16.49933 -16.41214 -15.94910 -15.76400 -15.69628 -15.07571 -14.74619 -14.55106 -14.50005 -14.29648 -13.75343 -13.65712 -13.63893 -13.41240 -13.25141 -13.17156 -13.10410 -12.92836 -12.85755 -12.82884 -12.65591 -12.26937 -11.97041 -11.75293 -11.74340 -11.64597 -11.36255 -11.13053 -10.88427 -10.48682 -10.28374 -10.15522 -10.00082 -9.75976 -8.66773 -8.34667 -6.12897 0.44904 1.27362 1.43771 1.47071 1.57077 1.60806 2.25865 2.28817 2.35519 2.41551 2.99398 3.32259 3.49565 3.56848 3.81125 3.84844 3.86831 3.91112 3.99057 4.24124 4.30547 4.31192 4.47329 4.48986 4.51229 4.53851 4.66700 4.71182 4.73688 4.78770 4.84337 4.85596 4.89199 5.01649 5.05844 5.09950 5.11527 5.24101 5.32376 5.37279 5.41363 5.53100 5.61613 5.65911 5.72410 6.19391 6.53956 6.67118 7.06522 7.26872 7.36193 8.74294 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025004 B = 0.001461 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.564871 B =19158.463106 C =19394.488420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 C -0.026 4.026 4 C -0.126 4.126 5 C -0.247 4.247 6 C 0.533 3.467 7 O -0.572 6.572 8 N -0.719 5.719 9 C 0.138 3.862 10 C -0.102 4.102 11 H 0.114 0.886 12 C -0.122 4.122 13 C 0.110 3.890 14 H 0.095 0.905 15 N -0.703 5.703 16 C 0.534 3.466 17 O -0.566 6.566 18 C -0.132 4.132 19 S -0.151 6.151 20 C -0.549 4.549 21 H 0.082 0.918 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.263 1.263 26 H -0.278 1.278 27 H -0.262 1.262 28 C -0.144 4.144 29 H 0.052 0.948 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.150 0.850 38 H 0.413 0.587 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.416 0.584 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.271 0.729 47 H 0.087 0.913 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.609 0.845 -29.477 34.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C -0.028 4.028 4 C -0.182 4.182 5 C -0.267 4.267 6 C 0.324 3.676 7 O -0.455 6.455 8 N -0.370 5.370 9 C 0.014 3.986 10 C -0.122 4.122 11 H 0.133 0.867 12 C -0.160 4.160 13 C 0.005 3.995 14 H 0.113 0.887 15 N -0.356 5.356 16 C 0.320 3.680 17 O -0.445 6.445 18 C -0.283 4.283 19 S 0.076 5.924 20 C -0.697 4.697 21 H 0.100 0.900 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.187 1.187 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.183 4.183 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.168 0.832 38 H 0.249 0.751 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.121 0.879 43 H 0.253 0.747 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.080 0.920 47 H 0.106 0.894 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.277 2.119 -29.287 34.587 hybrid contribution 0.332 -1.860 0.964 2.121 sum -17.945 0.259 -28.323 33.530 Atomic orbital electron populations 1.21466 0.94285 1.01544 1.01065 1.20977 0.97103 0.93542 1.02959 1.22823 0.89083 0.95146 0.95762 1.21055 1.03622 1.00453 0.93074 1.22511 1.09574 1.03619 0.91027 1.19025 0.79130 0.84008 0.85394 1.90725 1.41706 1.25089 1.87974 1.45883 1.57108 1.28749 1.05279 1.21227 0.99860 0.95872 0.81597 1.22488 0.95319 1.01116 0.93231 0.86746 1.23295 0.94994 1.03399 0.94341 1.22620 0.95065 0.93193 0.88632 0.88719 1.45784 1.38327 1.14168 1.37298 1.20077 0.79359 0.88239 0.80294 1.90677 1.61118 1.22405 1.70284 1.23397 1.02739 1.01396 1.00748 1.85547 1.45006 1.18077 1.43761 1.23184 1.25865 0.96702 1.23932 0.89969 1.26115 0.95060 1.00180 0.97664 1.70177 1.25419 1.25634 1.33486 0.85014 0.78162 0.77249 0.77631 1.18713 1.20333 1.18671 1.23561 0.97132 1.02644 0.94968 0.92868 0.93948 0.92135 0.90810 0.90550 0.89311 0.89916 0.90153 0.83212 0.75111 0.91631 0.92315 0.89327 0.87906 0.74710 0.87264 0.87383 0.91979 0.89429 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 9.44 71.98 0.68 -1.26 16 2 C -0.11 -1.66 5.31 29.85 0.16 -1.50 16 3 C -0.03 -0.32 5.36 -17.62 -0.09 -0.41 16 4 C -0.13 -0.73 10.04 71.23 0.72 -0.02 16 5 C -0.25 -3.08 9.62 23.43 0.23 -2.86 16 6 C 0.53 9.31 7.60 86.57 0.66 9.97 16 7 O -0.57 -13.77 11.63 -4.07 -0.05 -13.82 16 8 N -0.72 -9.22 5.55 -466.71 -2.59 -11.82 16 9 C 0.14 1.83 5.51 86.38 0.48 2.30 16 10 C -0.10 -1.15 3.75 -10.27 -0.04 -1.19 16 11 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 12 C -0.12 -1.51 7.39 31.12 0.23 -1.28 16 13 C 0.11 2.20 4.24 45.52 0.19 2.40 16 14 H 0.09 2.37 7.47 -2.39 -0.02 2.35 16 15 N -0.70 -16.92 5.35 -440.05 -2.36 -19.27 16 16 C 0.53 19.40 7.85 87.65 0.69 20.09 16 17 O -0.57 -25.94 15.46 -3.01 -0.05 -25.98 16 18 C -0.13 -5.19 6.16 71.23 0.44 -4.75 16 19 S -0.15 -8.40 20.57 -56.49 -1.16 -9.57 16 20 C -0.55 -31.45 9.50 67.95 0.65 -30.80 16 21 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 22 C 0.01 0.84 5.49 84.86 0.47 1.30 16 23 N -0.91 -56.02 13.22 21.65 0.29 -55.74 16 24 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 25 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 28 C -0.14 -2.34 7.43 31.12 0.23 -2.11 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.04 0.83 6.86 -2.38 -0.02 0.81 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.88 8.13 -2.39 -0.02 0.87 16 33 H 0.08 1.60 5.61 -2.38 -0.01 1.59 16 34 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.08 0.32 8.07 -2.38 -0.02 0.30 16 36 H 0.08 0.38 8.12 -2.38 -0.02 0.36 16 37 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.41 3.28 8.46 -92.70 -0.78 2.49 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.06 0.93 7.84 -2.39 -0.02 0.91 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.10 1.06 8.08 -2.39 -0.02 1.04 16 43 H 0.42 7.23 8.73 -92.71 -0.81 6.42 16 44 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 45 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 46 H 0.27 15.51 8.31 -92.70 -0.77 14.73 16 47 H 0.09 1.44 7.89 -2.39 -0.02 1.42 16 48 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -81.08 410.08 1.16 -79.92 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -0.63 Total: 20.78 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 5.67 Total: -10.12 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -4.66 Total: -86.83 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.09 Total: -39.80 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.57 kcal Total: -81.08 1.16 -79.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573140169.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.105 kcal (2) G-P(sol) polarization free energy of solvation -81.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds