Wall clock time and date at job start Sat Apr 11 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46816 * 2 1 4 4 C 1.53005 * 109.46748 * 179.97438 * 3 2 1 5 5 H 1.08993 * 115.56365 * 29.31290 * 4 3 2 6 6 C 1.52996 * 117.49663 * 243.61868 * 4 3 2 7 7 C 1.53002 * 60.00169 * 252.51502 * 6 4 3 8 8 H 1.08999 * 117.49948 * 107.51265 * 7 6 4 9 9 C 1.50695 * 117.49880 * 252.51635 * 7 6 4 10 10 O 1.21283 * 120.00376 * 68.60274 * 9 7 6 11 11 N 1.34780 * 119.99696 * 248.60657 * 9 7 6 12 12 C 1.47424 * 125.64802 * 359.97243 * 11 9 7 13 13 C 1.54915 * 104.83255 * 155.92100 * 12 11 9 14 14 C 1.55165 * 101.58324 * 37.00592 * 13 12 11 15 15 H 1.08996 * 110.71511 * 83.03970 * 14 13 12 16 16 N 1.46500 * 110.72057 * 206.13711 * 14 13 12 17 17 C 1.34776 * 119.99750 * 273.54510 * 16 14 13 18 18 O 1.21280 * 120.00179 * 0.02562 * 17 16 14 19 19 C 1.50701 * 119.99720 * 180.02562 * 17 16 14 20 20 S 1.80995 * 109.47163 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99933 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00353 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99705 * 179.97438 * 21 20 19 24 24 N 1.31625 * 120.00132 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99774 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 179.97438 * 25 23 21 27 27 H 1.48503 * 109.47261 * 60.00133 * 25 23 21 28 28 H 1.48500 * 109.47454 * 300.00126 * 25 23 21 29 29 C 1.47029 * 125.64666 * 180.02562 * 11 9 7 30 30 H 1.09005 * 109.47150 * 60.00295 * 1 2 3 31 31 H 1.09000 * 109.46873 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47431 * 300.00250 * 1 2 3 33 33 H 1.08995 * 109.47431 * 239.99750 * 2 1 3 34 34 H 1.09006 * 109.46795 * 119.99306 * 2 1 3 35 35 H 1.08995 * 109.47325 * 59.99685 * 3 2 1 36 36 H 1.08991 * 109.46754 * 299.99732 * 3 2 1 37 37 H 1.08998 * 117.50034 * 145.02514 * 6 4 3 38 38 H 1.09005 * 117.52081 * 359.97438 * 6 4 3 39 39 H 1.08997 * 110.37011 * 37.08131 * 12 11 9 40 40 H 1.08998 * 110.45666 * 274.80066 * 12 11 9 41 41 H 1.09000 * 111.00211 * 278.93822 * 13 12 11 42 42 H 1.08990 * 111.03819 * 155.09609 * 13 12 11 43 43 H 0.96997 * 119.99813 * 93.55324 * 16 14 13 44 44 H 1.08995 * 109.47138 * 59.99991 * 19 17 16 45 45 H 1.08998 * 109.47102 * 300.00238 * 19 17 16 46 46 H 0.97001 * 120.00200 * 359.97438 * 24 23 21 47 47 H 1.09000 * 109.88229 * 61.59612 * 29 11 9 48 48 H 1.09000 * 109.87967 * 300.42833 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0405 0.5852 -0.4804 6 6 4.2758 2.0458 1.2166 7 6 4.2764 2.7946 -0.1176 8 1 3.6514 3.6842 -0.1957 9 6 5.5694 2.8387 -0.8902 10 8 6.0124 1.8262 -1.3897 11 7 6.2338 4.0035 -1.0261 12 6 5.8110 5.3033 -0.4737 13 6 7.1181 6.1254 -0.3491 14 6 7.8914 5.6752 -1.6167 15 1 7.5660 6.2426 -2.4886 16 7 9.3363 5.8148 -1.4194 17 6 9.9410 6.9913 -1.6774 18 8 9.2890 7.9345 -2.0726 19 6 11.4275 7.1347 -1.4750 20 16 11.9350 8.8186 -1.9028 21 6 13.6640 8.7078 -1.5821 22 1 14.0895 7.7799 -1.2297 23 6 14.4793 9.8130 -1.7834 24 7 13.9607 10.9438 -2.2134 25 14 16.3122 9.6958 -1.4427 26 1 16.9545 11.0025 -1.7349 27 1 16.9103 8.6466 -2.3069 28 1 16.5291 9.3451 -0.0162 29 6 7.4997 4.1885 -1.7507 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 5.2108 1.5852 1.5356 38 1 3.6506 2.4431 2.0162 39 1 5.3529 5.1683 0.5060 40 1 5.1154 5.7974 -1.1521 41 1 7.6629 5.8579 0.5563 42 1 6.9116 7.1952 -0.3767 43 1 9.8577 5.0605 -1.1031 44 1 11.9514 6.4236 -2.1136 45 1 11.6730 6.9356 -0.4318 46 1 13.0089 11.0048 -2.3900 47 1 7.3657 3.9338 -2.8020 48 1 8.2739 3.5600 -1.3106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576229755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:49 Heat of formation + Delta-G solvation = -67.200460 kcal Electronic energy + Delta-G solvation = -25998.153621 eV Core-core repulsion = 22179.197108 eV Total energy + Delta-G solvation = -3818.956513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.75636 -39.56712 -38.19441 -37.07715 -34.38245 -34.20991 -32.55924 -31.25860 -29.76986 -28.64589 -27.76295 -25.05962 -24.74191 -23.06975 -22.36264 -21.55634 -20.94717 -20.59178 -19.36086 -18.39939 -17.76358 -17.05540 -16.46652 -16.09680 -15.67806 -15.53340 -15.24195 -15.05018 -14.50504 -14.27057 -13.98506 -13.85792 -13.74993 -13.52863 -13.39774 -13.03653 -12.94667 -12.59192 -12.51896 -12.43465 -12.42085 -12.17209 -11.85010 -11.77964 -11.72937 -11.52892 -11.29791 -11.23601 -10.93849 -10.70613 -10.47508 -10.19191 -10.15806 -9.64747 -9.59668 -9.17699 -9.04464 -9.00269 -8.26702 -6.71052 -6.65044 -4.03468 2.11217 2.38349 2.86883 2.89623 3.32945 3.36224 3.36351 3.50497 3.56902 3.87419 4.15460 4.21764 4.23172 4.29433 4.35122 4.59541 4.64536 4.68628 4.75185 4.79475 4.81223 4.89765 4.98945 5.04724 5.15677 5.19732 5.23880 5.24450 5.32847 5.35000 5.37841 5.40673 5.47825 5.52089 5.59317 5.68611 5.71478 5.74761 5.78223 5.80480 5.88960 5.93825 5.96682 6.41956 7.08373 7.48569 7.79786 7.88954 8.39403 8.47112 9.23871 10.78845 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.043247 B = 0.001518 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.287605 B =18439.731678 C =18678.736783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.116 4.116 5 H 0.118 0.882 6 C -0.147 4.147 7 C -0.188 4.188 8 H 0.124 0.876 9 C 0.560 3.440 10 O -0.539 6.539 11 N -0.614 5.614 12 C 0.101 3.899 13 C -0.146 4.146 14 C 0.138 3.862 15 H 0.106 0.894 16 N -0.729 5.729 17 C 0.535 3.465 18 O -0.514 6.514 19 C -0.132 4.132 20 S -0.114 6.114 21 C -0.609 4.609 22 H 0.066 0.934 23 C 0.036 3.964 24 N -0.883 5.883 25 Si 1.083 2.917 26 H -0.277 1.277 27 H -0.285 1.285 28 H -0.285 1.285 29 C 0.104 3.896 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.401 0.599 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.278 0.722 47 H 0.078 0.922 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.648 -19.977 7.422 32.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.128 4.128 4 C -0.135 4.135 5 H 0.136 0.864 6 C -0.185 4.185 7 C -0.209 4.209 8 H 0.142 0.858 9 C 0.349 3.651 10 O -0.416 6.416 11 N -0.349 5.349 12 C -0.022 4.022 13 C -0.185 4.185 14 C 0.032 3.968 15 H 0.124 0.876 16 N -0.384 5.384 17 C 0.321 3.679 18 O -0.388 6.388 19 C -0.283 4.283 20 S 0.112 5.888 21 C -0.757 4.757 22 H 0.084 0.916 23 C -0.174 4.174 24 N -0.517 5.517 25 Si 0.909 3.091 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.211 1.211 29 C -0.019 4.019 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.235 0.765 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.090 0.910 47 H 0.097 0.903 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.136 -18.125 6.447 30.864 hybrid contribution -0.207 -2.289 0.703 2.404 sum -24.343 -20.414 7.150 32.564 Atomic orbital electron populations 1.21781 0.95776 1.01729 1.01813 1.21503 0.95744 0.96369 1.02394 1.21256 0.91704 0.97535 1.02299 1.22484 0.94836 0.95210 1.00944 0.86384 1.23121 1.03193 1.01888 0.90252 1.22251 0.97327 0.99084 1.02264 0.85841 1.19358 0.84442 0.81474 0.79851 1.90713 1.68671 1.33267 1.48992 1.48310 1.23877 1.08485 1.54211 1.22395 0.97532 0.82866 0.99449 1.23258 0.95104 1.01309 0.98841 1.21839 0.81360 0.94502 0.99121 0.87631 1.45944 1.07503 1.14492 1.70468 1.20306 0.89574 0.81879 0.76143 1.90705 1.66102 1.38217 1.43790 1.23323 0.93573 1.06105 1.05299 1.84806 1.09206 1.06976 1.87827 1.23705 0.92010 1.03521 1.56449 0.91592 1.26049 1.06657 0.91300 0.93417 1.70804 1.15751 1.26051 1.39133 0.83336 0.72885 0.76346 0.76490 1.20249 1.21119 1.21121 1.22077 0.86376 0.95773 0.97713 0.92709 0.92686 0.92759 0.91764 0.91775 0.91538 0.91321 0.88259 0.87644 0.89963 0.90695 0.89997 0.88701 0.76454 0.88823 0.88856 0.91007 0.90336 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16 2 C -0.12 -0.62 5.89 -26.73 -0.16 -0.78 16 3 C -0.09 -0.47 5.50 -26.72 -0.15 -0.62 16 4 C -0.12 -0.81 5.25 -90.62 -0.48 -1.28 16 5 H 0.12 1.03 7.60 -51.93 -0.39 0.64 16 6 C -0.15 -0.91 9.88 -26.73 -0.26 -1.17 16 7 C -0.19 -1.39 4.98 -91.77 -0.46 -1.85 16 8 H 0.12 0.70 7.78 -51.93 -0.40 0.29 16 9 C 0.56 5.98 7.63 -10.99 -0.08 5.89 16 10 O -0.54 -7.75 16.58 5.56 0.09 -7.66 16 11 N -0.61 -5.77 3.33 -170.51 -0.57 -6.34 16 12 C 0.10 0.72 6.47 -2.53 -0.02 0.70 16 13 C -0.15 -1.31 6.77 -24.58 -0.17 -1.48 16 14 C 0.14 1.46 3.24 -66.09 -0.21 1.25 16 15 H 0.11 1.26 7.69 -51.93 -0.40 0.87 16 16 N -0.73 -8.86 5.20 -52.03 -0.27 -9.13 16 17 C 0.53 9.27 7.85 -10.99 -0.09 9.19 16 18 O -0.51 -10.83 15.59 5.56 0.09 -10.74 16 19 C -0.13 -2.56 6.16 36.01 0.22 -2.34 16 20 S -0.11 -3.01 19.60 -107.50 -2.11 -5.12 16 21 C -0.61 -17.35 9.50 30.94 0.29 -17.05 16 22 H 0.07 1.80 7.80 -52.49 -0.41 1.39 16 23 C 0.04 1.05 5.49 -17.43 -0.10 0.95 16 24 N -0.88 -27.24 13.67 55.49 0.76 -26.48 16 25 Si 1.08 24.70 29.92 -169.99 -5.09 19.61 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 C 0.10 1.01 6.62 -3.06 -0.02 0.99 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.29 7.87 -51.93 -0.41 -0.12 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.11 0.46 8.03 -51.93 -0.42 0.04 16 39 H 0.08 0.45 7.67 -51.93 -0.40 0.06 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.40 3.85 8.31 -40.82 -0.34 3.51 16 44 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 45 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 46 H 0.28 8.73 7.12 -40.82 -0.29 8.44 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.07 0.72 7.69 -51.93 -0.40 0.32 16 LS Contribution 409.75 15.07 6.17 6.17 Total: -1.00 -35.94 409.75 -10.37 -46.32 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -8.15 Total: 1.28 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -1.30 Total: -7.90 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: -0.08 Total: -41.95 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.18 Total: -18.40 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.09 Total: 19.61 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -2.11 Total: -5.12 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.94 -10.37 -46.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576229755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.885 kcal (2) G-P(sol) polarization free energy of solvation -35.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds