Wall clock time and date at job start Sat Apr 11 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46816 * 2 1 4 4 C 1.53005 * 109.46748 * 179.97438 * 3 2 1 5 5 H 1.08993 * 115.56365 * 29.31290 * 4 3 2 6 6 C 1.52996 * 117.49663 * 243.61868 * 4 3 2 7 7 C 1.53002 * 60.00169 * 252.51502 * 6 4 3 8 8 H 1.08999 * 117.49948 * 107.51265 * 7 6 4 9 9 C 1.50695 * 117.49880 * 252.51635 * 7 6 4 10 10 O 1.21283 * 120.00376 * 68.60274 * 9 7 6 11 11 N 1.34780 * 119.99696 * 248.60657 * 9 7 6 12 12 C 1.47424 * 125.64802 * 359.97243 * 11 9 7 13 13 C 1.54915 * 104.83255 * 155.92100 * 12 11 9 14 14 C 1.55165 * 101.58324 * 37.00592 * 13 12 11 15 15 H 1.08996 * 110.71511 * 83.03970 * 14 13 12 16 16 N 1.46500 * 110.72057 * 206.13711 * 14 13 12 17 17 C 1.34776 * 119.99750 * 273.54510 * 16 14 13 18 18 O 1.21280 * 120.00179 * 0.02562 * 17 16 14 19 19 C 1.50701 * 119.99720 * 180.02562 * 17 16 14 20 20 S 1.80995 * 109.47163 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99933 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00353 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99705 * 179.97438 * 21 20 19 24 24 N 1.31625 * 120.00132 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99774 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 179.97438 * 25 23 21 27 27 H 1.48503 * 109.47261 * 60.00133 * 25 23 21 28 28 H 1.48500 * 109.47454 * 300.00126 * 25 23 21 29 29 C 1.47029 * 125.64666 * 180.02562 * 11 9 7 30 30 H 1.09005 * 109.47150 * 60.00295 * 1 2 3 31 31 H 1.09000 * 109.46873 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47431 * 300.00250 * 1 2 3 33 33 H 1.08995 * 109.47431 * 239.99750 * 2 1 3 34 34 H 1.09006 * 109.46795 * 119.99306 * 2 1 3 35 35 H 1.08995 * 109.47325 * 59.99685 * 3 2 1 36 36 H 1.08991 * 109.46754 * 299.99732 * 3 2 1 37 37 H 1.08998 * 117.50034 * 145.02514 * 6 4 3 38 38 H 1.09005 * 117.52081 * 359.97438 * 6 4 3 39 39 H 1.08997 * 110.37011 * 37.08131 * 12 11 9 40 40 H 1.08998 * 110.45666 * 274.80066 * 12 11 9 41 41 H 1.09000 * 111.00211 * 278.93822 * 13 12 11 42 42 H 1.08990 * 111.03819 * 155.09609 * 13 12 11 43 43 H 0.96997 * 119.99813 * 93.55324 * 16 14 13 44 44 H 1.08995 * 109.47138 * 59.99991 * 19 17 16 45 45 H 1.08998 * 109.47102 * 300.00238 * 19 17 16 46 46 H 0.97001 * 120.00200 * 359.97438 * 24 23 21 47 47 H 1.09000 * 109.88229 * 61.59612 * 29 11 9 48 48 H 1.09000 * 109.87967 * 300.42833 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0405 0.5852 -0.4804 6 6 4.2758 2.0458 1.2166 7 6 4.2764 2.7946 -0.1176 8 1 3.6514 3.6842 -0.1957 9 6 5.5694 2.8387 -0.8902 10 8 6.0124 1.8262 -1.3897 11 7 6.2338 4.0035 -1.0261 12 6 5.8110 5.3033 -0.4737 13 6 7.1181 6.1254 -0.3491 14 6 7.8914 5.6752 -1.6167 15 1 7.5660 6.2426 -2.4886 16 7 9.3363 5.8148 -1.4194 17 6 9.9410 6.9913 -1.6774 18 8 9.2890 7.9345 -2.0726 19 6 11.4275 7.1347 -1.4750 20 16 11.9350 8.8186 -1.9028 21 6 13.6640 8.7078 -1.5821 22 1 14.0895 7.7799 -1.2297 23 6 14.4793 9.8130 -1.7834 24 7 13.9607 10.9438 -2.2134 25 14 16.3122 9.6958 -1.4427 26 1 16.9545 11.0025 -1.7349 27 1 16.9103 8.6466 -2.3069 28 1 16.5291 9.3451 -0.0162 29 6 7.4997 4.1885 -1.7507 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 5.2108 1.5852 1.5356 38 1 3.6506 2.4431 2.0162 39 1 5.3529 5.1683 0.5060 40 1 5.1154 5.7974 -1.1521 41 1 7.6629 5.8579 0.5563 42 1 6.9116 7.1952 -0.3767 43 1 9.8577 5.0605 -1.1031 44 1 11.9514 6.4236 -2.1136 45 1 11.6730 6.9356 -0.4318 46 1 13.0089 11.0048 -2.3900 47 1 7.3657 3.9338 -2.8020 48 1 8.2739 3.5600 -1.3106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576229755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:49 Heat of formation + Delta-G solvation = -90.289695 kcal Electronic energy + Delta-G solvation = -25999.154845 eV Core-core repulsion = 22179.197108 eV Total energy + Delta-G solvation = -3819.957737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.59418 -40.71468 -39.03649 -37.85051 -35.42887 -34.74922 -34.73209 -32.32930 -30.81669 -29.65496 -28.27803 -27.07910 -25.66062 -23.71402 -22.83821 -22.48154 -21.78299 -21.45018 -20.44530 -20.06386 -18.52746 -18.23772 -17.66854 -17.03930 -16.67176 -16.53726 -16.07006 -16.02455 -15.77011 -15.66276 -15.01790 -14.97565 -14.69978 -14.50898 -14.43210 -14.03092 -13.89554 -13.87392 -13.61928 -13.54274 -13.09255 -13.05015 -12.88427 -12.74047 -12.70129 -12.21924 -12.04324 -11.95515 -11.95229 -11.68622 -11.55442 -11.24044 -11.11164 -11.09514 -11.05945 -10.83397 -10.32875 -10.26880 -9.82637 -8.92007 -8.86113 -6.27135 1.15378 1.35516 1.46847 1.51956 1.60721 1.67962 1.81172 2.22348 2.35082 2.81559 3.02716 3.12442 3.17298 3.45785 3.56700 3.71861 3.80067 3.81611 3.94960 4.08542 4.10806 4.17087 4.19654 4.20431 4.28772 4.36399 4.38332 4.50082 4.63280 4.65840 4.69506 4.81129 4.85736 4.89941 4.94478 4.97898 5.00358 5.05466 5.15469 5.20907 5.34532 5.35726 5.40403 5.51235 5.64599 6.15684 6.30340 6.37395 7.00199 7.06111 7.09526 8.51607 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.043247 B = 0.001518 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.287605 B =18439.731678 C =18678.736783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.084 4.084 4 C -0.122 4.122 5 H 0.092 0.908 6 C -0.133 4.133 7 C -0.191 4.191 8 H 0.148 0.852 9 C 0.553 3.447 10 O -0.586 6.586 11 N -0.613 5.613 12 C 0.105 3.895 13 C -0.141 4.141 14 C 0.138 3.862 15 H 0.092 0.908 16 N -0.705 5.705 17 C 0.541 3.459 18 O -0.557 6.557 19 C -0.112 4.112 20 S -0.190 6.190 21 C -0.616 4.616 22 H 0.074 0.926 23 C -0.017 4.017 24 N -0.913 5.913 25 Si 1.135 2.865 26 H -0.280 1.280 27 H -0.264 1.264 28 H -0.263 1.263 29 C 0.109 3.891 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.133 0.867 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.416 0.584 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.261 0.739 47 H 0.072 0.928 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.404 -21.347 9.267 34.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.121 4.121 4 C -0.141 4.141 5 H 0.111 0.889 6 C -0.170 4.170 7 C -0.211 4.211 8 H 0.166 0.834 9 C 0.344 3.656 10 O -0.467 6.467 11 N -0.347 5.347 12 C -0.017 4.017 13 C -0.180 4.180 14 C 0.032 3.968 15 H 0.110 0.890 16 N -0.359 5.359 17 C 0.326 3.674 18 O -0.434 6.434 19 C -0.264 4.264 20 S 0.037 5.963 21 C -0.764 4.764 22 H 0.093 0.907 23 C -0.220 4.220 24 N -0.548 5.548 25 Si 0.952 3.048 26 H -0.205 1.205 27 H -0.189 1.189 28 H -0.188 1.188 29 C -0.015 4.015 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.151 0.849 39 H 0.127 0.873 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.254 0.746 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.072 0.928 47 H 0.091 0.909 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.928 -19.538 8.316 32.746 hybrid contribution -0.054 -1.989 0.124 1.993 sum -24.982 -21.527 8.440 34.040 Atomic orbital electron populations 1.21770 0.95114 1.01938 1.02140 1.21502 0.96291 0.96401 1.01922 1.21228 0.90237 0.97604 1.03033 1.22458 0.95868 0.94216 1.01548 0.88935 1.23208 1.02884 1.00706 0.90241 1.22311 0.95939 1.00204 1.02673 0.83398 1.19977 0.85238 0.80925 0.79470 1.90691 1.70041 1.34884 1.51039 1.48387 1.23483 1.09101 1.53683 1.22527 0.96710 0.81283 1.01148 1.23200 0.95841 1.01196 0.97767 1.21897 0.80084 0.95062 0.99774 0.88994 1.45663 1.08464 1.13208 1.68556 1.19917 0.88597 0.82736 0.76117 1.90699 1.66562 1.40004 1.46142 1.23236 0.95314 1.01175 1.06642 1.85006 1.09301 1.13500 1.88540 1.24050 0.92771 1.03867 1.55680 0.90741 1.27774 1.11251 0.90687 0.92313 1.70921 1.14848 1.27479 1.41565 0.82736 0.67351 0.76784 0.77884 1.20537 1.18935 1.18782 1.21951 0.87043 0.94888 0.97635 0.92734 0.92603 0.92041 0.92868 0.91722 0.89890 0.91375 0.89379 0.84935 0.87343 0.89304 0.89596 0.89421 0.74589 0.87122 0.86901 0.92813 0.90945 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 71.98 0.71 -0.41 16 2 C -0.12 -1.12 5.89 30.60 0.18 -0.94 16 3 C -0.08 -0.71 5.50 30.60 0.17 -0.55 16 4 C -0.12 -1.55 5.25 -10.79 -0.06 -1.60 16 5 H 0.09 1.67 7.60 -2.39 -0.02 1.65 16 6 C -0.13 -1.32 9.88 30.59 0.30 -1.02 16 7 C -0.19 -2.40 4.98 -11.54 -0.06 -2.45 16 8 H 0.15 1.12 7.78 -2.39 -0.02 1.10 16 9 C 0.55 11.18 7.63 87.66 0.67 11.85 16 10 O -0.59 -16.96 16.58 -3.04 -0.05 -17.01 16 11 N -0.61 -10.44 3.33 -811.77 -2.70 -13.14 16 12 C 0.11 1.21 6.47 86.86 0.56 1.77 16 13 C -0.14 -2.26 6.77 31.99 0.22 -2.04 16 14 C 0.14 2.73 3.24 46.18 0.15 2.88 16 15 H 0.09 2.16 7.69 -2.39 -0.02 2.14 16 16 N -0.70 -16.01 5.20 -436.90 -2.27 -18.28 16 17 C 0.54 18.32 7.85 87.66 0.69 19.01 16 18 O -0.56 -23.64 15.59 -3.03 -0.05 -23.69 16 19 C -0.11 -4.24 6.16 71.24 0.44 -3.80 16 20 S -0.19 -10.20 19.60 -56.49 -1.11 -11.31 16 21 C -0.62 -35.05 9.50 67.95 0.65 -34.41 16 22 H 0.07 3.97 7.80 -2.91 -0.02 3.95 16 23 C -0.02 -0.97 5.49 84.86 0.47 -0.50 16 24 N -0.91 -57.44 13.67 21.65 0.30 -57.15 16 25 Si 1.13 48.78 29.92 68.60 2.05 50.83 16 26 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 27 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 28 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 29 C 0.11 1.99 6.62 86.73 0.57 2.56 16 30 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.08 0.45 7.87 -2.39 -0.02 0.44 16 36 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.13 0.62 8.03 -2.38 -0.02 0.60 16 39 H 0.11 0.76 7.67 -2.39 -0.02 0.74 16 40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.42 7.01 8.31 -92.71 -0.77 6.24 16 44 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 45 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 46 H 0.26 17.03 7.12 -92.71 -0.66 16.37 16 47 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.08 1.40 7.69 -2.39 -0.02 1.38 16 Total: -1.00 -80.93 409.75 2.11 -78.82 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.28 Total: 20.57 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 5.66 Total: -9.64 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -4.68 Total: -88.57 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -0.10 Total: -40.70 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.05 Total: 50.83 kcal Atomic # 16 Polarization: -10.20 SS G_CDS: -1.11 Total: -11.31 kcal Total: -80.93 2.11 -78.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576229755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.470 kcal (2) G-P(sol) polarization free energy of solvation -80.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds